TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739985 P. falciparum 3D7 GENOMIC chr11 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2035250 ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40 Warning! 12 characters in sequence are not A, C, G, or T Found at i: i:843418 original size:2 final size:2 Alignment explanation
Indices: 843403--843470 Score: 87 Period size: 2 Copynumber: 35.0 Consensus size: 2 843393 TTTATGTATG * * 843403 AT AG AT AT AT -T AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT * * * 843444 AT AT TT AT AT -T AT AT GT AT GT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 843471 TTTTCTCCCT Statistics Matches: 54, Mismatches: 10, Indels: 4 0.79 0.15 0.06 Matches are distributed among these distances: 1 2 0.04 2 52 0.96 ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 842903 -- 843402 ATAAAAAAAATAAATCTGTATTTTTTTTATTTATAATATATATTTTTTTTTAATTGTATCCGTTA TAAATTTATATTTTTTTGTAATTAAAAAAAAAGTAGTGCCGTTAATATATTATTATTTTTTAATA TAAGAAATATTCAATAGATTATTATATTATATATAATATTTTTATAATATATATTTTTTTTGAAG ACATTTGTTTTGAGTTTTTATATATATATATATATATATTATATATTTTTTTTTTTTTTTTTTTT TTTTTTCTTCATAATGTTCATATGTTATTATTAAGATTAAATGTATGTAATATAAATATAATTCT TTTTTTTTTCTTTATGACTTTTATATAATATTTTTATATTTATTTTTAAGAATATAGTATAATTT AATATTTCATATTTATATTCTTTTTTCTGTTGTATCATGCAAAATTTTGCGTTTTATTATTTGAA TAATTATAAGATAATTATTTTACGTCTGATTGAAGTTTATGTATG Right flanking sequence: Indices 843471 -- 843970 TTTTCTCCCTTTCCCTTTTCCAACAATAAAGTATGTATTAAAGAATAATGATTATATAAATACAC ATATATAAATTATTTTTATAAAACTTATTTCGCTGTTTTTATGAAATTTAAAAGAAATAAGGTTT ACATAAAAAAGAAATAATATATATATATATATATATATATATATAATACGACATGTAATATGAGG TCATTTAATATAATACATATACCTGTAAATATATCGTTATATATGTTTAATTTTTTCTTTCTATA TTATTCCTATGTGAAAAAAAATATATATATGTACATAACTTTGTTGTGATAAATGTTAAATTTTT TTATAAAGTTAACAATATCTTGAAAAAAAAAAAAAAAAAAAAAAAAAATGACCCCAGTTACTTTT GAATGTATATCTGTGGCACTCGTTTCATTATTTTTCATAAAAATATTGGCATATATTTACAAACA AAAGTGTGAAAAAGATAATTCAAAAGTAAAGAAAGGGAAAGAAAA Found at i:843487 original size:6 final size:6 Alignment explanation
Indices: 843476--843488 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 843466 TATATTTTTC 843476 TCCCTT TCCCTT T 1 TCCCTT TCCCTT T 843489 TCCAACAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54 Consensus pattern (6 bp): TCCCTT Left flanking sequence: Indices 842976 -- 843475 TATTTTTTTGTAATTAAAAAAAAAGTAGTGCCGTTAATATATTATTATTTTTTAATATAAGAAAT ATTCAATAGATTATTATATTATATATAATATTTTTATAATATATATTTTTTTTGAAGACATTTGT TTTGAGTTTTTATATATATATATATATATATTATATATTTTTTTTTTTTTTTTTTTTTTTTTTCT TCATAATGTTCATATGTTATTATTAAGATTAAATGTATGTAATATAAATATAATTCTTTTTTTTT TCTTTATGACTTTTATATAATATTTTTATATTTATTTTTAAGAATATAGTATAATTTAATATTTC ATATTTATATTCTTTTTTCTGTTGTATCATGCAAAATTTTGCGTTTTATTATTTGAATAATTATA AGATAATTATTTTACGTCTGATTGAAGTTTATGTATGATAGATATATTATATATATATATATATA TATAGATATATATATATTTATATTATATGTATGTATATATTTTTC Right flanking sequence: Indices 843489 -- 843988 TCCAACAATAAAGTATGTATTAAAGAATAATGATTATATAAATACACATATATAAATTATTTTTA TAAAACTTATTTCGCTGTTTTTATGAAATTTAAAAGAAATAAGGTTTACATAAAAAAGAAATAAT ATATATATATATATATATATATATATAATACGACATGTAATATGAGGTCATTTAATATAATACAT ATACCTGTAAATATATCGTTATATATGTTTAATTTTTTCTTTCTATATTATTCCTATGTGAAAAA AAATATATATATGTACATAACTTTGTTGTGATAAATGTTAAATTTTTTTATAAAGTTAACAATAT CTTGAAAAAAAAAAAAAAAAAAAAAAAAAATGACCCCAGTTACTTTTGAATGTATATCTGTGGCA CTCGTTTCATTATTTTTCATAAAAATATTGGCATATATTTACAAACAAAAGTGTGAAAAAGATAA TTCAAAAGTAAAGAAAGGGAAAGAAAATAATAATAATTCTACAAT Found at i:843622 original size:2 final size:2 Alignment explanation
Indices: 843617--843645 Score: 58 Period size: 2 Copynumber: 14.5 Consensus size: 2 843607 AAAAGAAATA 843617 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 843646 ATACGACATG Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 27 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Left flanking sequence: Indices 843117 -- 843616 ATATATATATATATATATATTATATATTTTTTTTTTTTTTTTTTTTTTTTTTCTTCATAATGTTC ATATGTTATTATTAAGATTAAATGTATGTAATATAAATATAATTCTTTTTTTTTTCTTTATGACT TTTATATAATATTTTTATATTTATTTTTAAGAATATAGTATAATTTAATATTTCATATTTATATT CTTTTTTCTGTTGTATCATGCAAAATTTTGCGTTTTATTATTTGAATAATTATAAGATAATTATT TTACGTCTGATTGAAGTTTATGTATGATAGATATATTATATATATATATATATATATAGATATAT ATATATTTATATTATATGTATGTATATATTTTTCTCCCTTTCCCTTTTCCAACAATAAAGTATGT ATTAAAGAATAATGATTATATAAATACACATATATAAATTATTTTTATAAAACTTATTTCGCTGT TTTTATGAAATTTAAAAGAAATAAGGTTTACATAAAAAAGAAATA Right flanking sequence: Indices 843646 -- 844145 ATACGACATGTAATATGAGGTCATTTAATATAATACATATACCTGTAAATATATCGTTATATATG TTTAATTTTTTCTTTCTATATTATTCCTATGTGAAAAAAAATATATATATGTACATAACTTTGTT GTGATAAATGTTAAATTTTTTTATAAAGTTAACAATATCTTGAAAAAAAAAAAAAAAAAAAAAAA AAATGACCCCAGTTACTTTTGAATGTATATCTGTGGCACTCGTTTCATTATTTTTCATAAAAATA TTGGCATATATTTACAAACAAAAGTGTGAAAAAGATAATTCAAAAGTAAAGAAAGGGAAAGAAAA TAATAATAATTCTACAATGAATGTTAAACTTGATATCGTTTGTGATATAACAAATAGTTTTGGAA AATATTATACCAAAGAAGTATTAAAAAAGAAAAATATATTAGGTATTATACCAGTATATAAAAGT TATAATAAGGAATATGAAAACGTGGATAAATTCAATGGATTTATG Found at i:843824 original size:1 final size:1 Alignment explanation
Indices: 843818--843843 Score: 52 Period size: 1 Copynumber: 26.0 Consensus size: 1 843808 CAATATCTTG 843818 AAAAAAAAAAAAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAA 843844 TGACCCCAGT Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 25 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 843318 -- 843817 TCTGTTGTATCATGCAAAATTTTGCGTTTTATTATTTGAATAATTATAAGATAATTATTTTACGT CTGATTGAAGTTTATGTATGATAGATATATTATATATATATATATATATATAGATATATATATAT TTATATTATATGTATGTATATATTTTTCTCCCTTTCCCTTTTCCAACAATAAAGTATGTATTAAA GAATAATGATTATATAAATACACATATATAAATTATTTTTATAAAACTTATTTCGCTGTTTTTAT GAAATTTAAAAGAAATAAGGTTTACATAAAAAAGAAATAATATATATATATATATATATATATAT ATAATACGACATGTAATATGAGGTCATTTAATATAATACATATACCTGTAAATATATCGTTATAT ATGTTTAATTTTTTCTTTCTATATTATTCCTATGTGAAAAAAAATATATATATGTACATAACTTT GTTGTGATAAATGTTAAATTTTTTTATAAAGTTAACAATATCTTG Right flanking sequence: Indices 843844 -- 844343 TGACCCCAGTTACTTTTGAATGTATATCTGTGGCACTCGTTTCATTATTTTTCATAAAAATATTG GCATATATTTACAAACAAAAGTGTGAAAAAGATAATTCAAAAGTAAAGAAAGGGAAAGAAAATAA TAATAATTCTACAATGAATGTTAAACTTGATATCGTTTGTGATATAACAAATAGTTTTGGAAAAT ATTATACCAAAGAAGTATTAAAAAAGAAAAATATATTAGGTATTATACCAGTATATAAAAGTTAT AATAAGGAATATGAAAACGTGGATAAATTCAATGGATTTATGGCCGAATTTTTCAAATTTTTAGA TTTAAGAAATGGGAAAGTAATATTAGCTAGTGATAATAATTCTATAAATAATTATATAAATCCAT TATCTAAAATAGAAGATACAGAAAATGAAAATGATGAAGAAGATATATTACTAGCTTCATGTATT ATTTATGAAAAGATATTAATAATCGTTTGTGTAATTAATTATGAT Found at i:844265 original size:6 final size:6 Alignment explanation
Indices: 844254--844267 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 844244 AGAAGATACA 844254 GAAAAT GAAAAT GA 1 GAAAAT GAAAAT GA 844268 TGAAGAAGAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.64, C:0.00, G:0.21, T:0.14 Consensus pattern (6 bp): GAAAAT Left flanking sequence: Indices 843754 -- 844253 TATATATGTACATAACTTTGTTGTGATAAATGTTAAATTTTTTTATAAAGTTAACAATATCTTGA AAAAAAAAAAAAAAAAAAAAAAAAATGACCCCAGTTACTTTTGAATGTATATCTGTGGCACTCGT TTCATTATTTTTCATAAAAATATTGGCATATATTTACAAACAAAAGTGTGAAAAAGATAATTCAA AAGTAAAGAAAGGGAAAGAAAATAATAATAATTCTACAATGAATGTTAAACTTGATATCGTTTGT GATATAACAAATAGTTTTGGAAAATATTATACCAAAGAAGTATTAAAAAAGAAAAATATATTAGG TATTATACCAGTATATAAAAGTTATAATAAGGAATATGAAAACGTGGATAAATTCAATGGATTTA TGGCCGAATTTTTCAAATTTTTAGATTTAAGAAATGGGAAAGTAATATTAGCTAGTGATAATAAT TCTATAAATAATTATATAAATCCATTATCTAAAATAGAAGATACA Right flanking sequence: Indices 844268 -- 844767 TGAAGAAGATATATTACTAGCTTCATGTATTATTTATGAAAAGATATTAATAATCGTTTGTGTAA TTAATTATGATATGGATATTGAAAAACAATTGGATTATTTTTTGAAGAATCAAAAAAACGATTTA CTTATTGTTATAAATAATTTATTTTTAAATAGCAATTTGAAAGATGAAAAGAATTATAAAAATAT GGAATTATTAGAAAAAAAATGTTCCTTAGTACCAAAAGGAGATGTCAATAATTTATTATCCTTTT TTGATTTTATGAATATTAAAAAAGGATGTATAAGTGATTTATATTCAATCATACAAATAAATATG AAAAACTTTCGTTATTTTTATAAACTTTTAGGAAATACCACGTCTGGTACATTTTTCAATGGACA TGTCTATGATAATTTTATGTCTACGAATATATATAATTCACTTATGGATATATATGACGATTTGA TTTCAGAAACAATAAAAAAAGACAAAAAAAAAATTAACATTAAAA Found at i:844768 original size:1 final size:1 Alignment explanation
Indices: 844736--844755 Score: 26 Period size: 1 Copynumber: 20.0 Consensus size: 1 844726 CAGAAACAAT * * 844736 AAAAAAAGACAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAA 844756 TTAACATTAA Statistics Matches: 15, Mismatches: 4, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 1 15 1.00 ACGTcount: A:0.90, C:0.05, G:0.05, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 844236 -- 844735 TCTAAAATAGAAGATACAGAAAATGAAAATGATGAAGAAGATATATTACTAGCTTCATGTATTAT TTATGAAAAGATATTAATAATCGTTTGTGTAATTAATTATGATATGGATATTGAAAAACAATTGG ATTATTTTTTGAAGAATCAAAAAAACGATTTACTTATTGTTATAAATAATTTATTTTTAAATAGC AATTTGAAAGATGAAAAGAATTATAAAAATATGGAATTATTAGAAAAAAAATGTTCCTTAGTACC AAAAGGAGATGTCAATAATTTATTATCCTTTTTTGATTTTATGAATATTAAAAAAGGATGTATAA GTGATTTATATTCAATCATACAAATAAATATGAAAAACTTTCGTTATTTTTATAAACTTTTAGGA AATACCACGTCTGGTACATTTTTCAATGGACATGTCTATGATAATTTTATGTCTACGAATATATA TAATTCACTTATGGATATATATGACGATTTGATTTCAGAAACAAT Right flanking sequence: Indices 844756 -- 845255 TTAACATTAAAAAGTTTTATACCTTTTATTGTGTAAAGTGTGATTATAAAAAAATTGTGAAATTA AGTCTTATGAAATTAGAAAATAATTTCTTCTTATTTTATATATATAATATCTATTCGTATATTTA TTATCAGTTAATATTATATGTATCTCAGAAAAATTCTGTATAATTCTTTTTTTTTGGAAATGTAT TTTTATGTTTTGTTTTAGTATTACATATATATGGAATAATGACATATTGAATTATATATATATAT ATATATATATATATATATATATGTATACATATATGTGTATTTTTTTTTTTTTTTTTTTTTTTTAT TTCACATATTTTACTTTATTTGCAACAAATTAATTAATTTATAATAAAAAGAAATTTGTACTTTT TTGTTTAAATTATTTTCCATTTGTTATATATATAAACATAAAAAAAAATTGCTTTTATATTTTTT AAGACGTATTAACGTCTTTTTTTTTTCTTTTTTTTTTTTTTGGAT Found at i:845010 original size:2 final size:2 Alignment explanation
Indices: 845003--845049 Score: 80 Period size: 2 Copynumber: 23.5 Consensus size: 2 844993 CATATTGAAT * * 845003 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA CA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 845045 TA TA T 1 TA TA T 845050 GTGTATTTTT Statistics Matches: 41, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 2 41 1.00 ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49 Consensus pattern (2 bp): TA Left flanking sequence: Indices 844503 -- 845002 GATGTCAATAATTTATTATCCTTTTTTGATTTTATGAATATTAAAAAAGGATGTATAAGTGATTT ATATTCAATCATACAAATAAATATGAAAAACTTTCGTTATTTTTATAAACTTTTAGGAAATACCA CGTCTGGTACATTTTTCAATGGACATGTCTATGATAATTTTATGTCTACGAATATATATAATTCA CTTATGGATATATATGACGATTTGATTTCAGAAACAATAAAAAAAGACAAAAAAAAAATTAACAT TAAAAAGTTTTATACCTTTTATTGTGTAAAGTGTGATTATAAAAAAATTGTGAAATTAAGTCTTA TGAAATTAGAAAATAATTTCTTCTTATTTTATATATATAATATCTATTCGTATATTTATTATCAG TTAATATTATATGTATCTCAGAAAAATTCTGTATAATTCTTTTTTTTTGGAAATGTATTTTTATG TTTTGTTTTAGTATTACATATATATGGAATAATGACATATTGAAT Right flanking sequence: Indices 845050 -- 845549 GTGTATTTTTTTTTTTTTTTTTTTTTTTTATTTCACATATTTTACTTTATTTGCAACAAATTAAT TAATTTATAATAAAAAGAAATTTGTACTTTTTTGTTTAAATTATTTTCCATTTGTTATATATATA AACATAAAAAAAAATTGCTTTTATATTTTTTAAGACGTATTAACGTCTTTTTTTTTTCTTTTTTT TTTTTTTGGATAATATATATTCAATATATATATATATATTATGGTATTATATACAAATAAAAGTC CATTACCAAATTAAGCAACTTTGTGATTAAAATATAACAAATAAATAACATTTACATAATATATA TTATTTCTTTTTATTTATATATTCCTCTAATACGTTATTATAACACGTTGTTTCTTTTAATTATA AAAAAATAATAATATTATAACTGTACTCCAAATTTTGTTTTTTAAATTCAAAATTTTCTATTCTT TAAATATATTAAGCATAAAAAAAAAAAAAAAAAGAAAAAAAAAAA Found at i:845061 original size:1 final size:1 Alignment explanation
Indices: 845055--845082 Score: 49 Period size: 1 Copynumber: 28.0 Consensus size: 1 845045 TATATGTGTA * 845055 TTTTTTTTTTTTTTTTTTTTTTTTATTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT 845083 CACATATTTT Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 1 25 1.00 ACGTcount: A:0.04, C:0.00, G:0.00, T:0.96 Consensus pattern (1 bp): T Left flanking sequence: Indices 844555 -- 845054 GTATAAGTGATTTATATTCAATCATACAAATAAATATGAAAAACTTTCGTTATTTTTATAAACTT TTAGGAAATACCACGTCTGGTACATTTTTCAATGGACATGTCTATGATAATTTTATGTCTACGAA TATATATAATTCACTTATGGATATATATGACGATTTGATTTCAGAAACAATAAAAAAAGACAAAA AAAAAATTAACATTAAAAAGTTTTATACCTTTTATTGTGTAAAGTGTGATTATAAAAAAATTGTG AAATTAAGTCTTATGAAATTAGAAAATAATTTCTTCTTATTTTATATATATAATATCTATTCGTA TATTTATTATCAGTTAATATTATATGTATCTCAGAAAAATTCTGTATAATTCTTTTTTTTTGGAA ATGTATTTTTATGTTTTGTTTTAGTATTACATATATATGGAATAATGACATATTGAATTATATAT ATATATATATATATATATATATATATATGTATACATATATGTGTA Right flanking sequence: Indices 845083 -- 845582 CACATATTTTACTTTATTTGCAACAAATTAATTAATTTATAATAAAAAGAAATTTGTACTTTTTT GTTTAAATTATTTTCCATTTGTTATATATATAAACATAAAAAAAAATTGCTTTTATATTTTTTAA GACGTATTAACGTCTTTTTTTTTTCTTTTTTTTTTTTTTGGATAATATATATTCAATATATATAT ATATATTATGGTATTATATACAAATAAAAGTCCATTACCAAATTAAGCAACTTTGTGATTAAAAT ATAACAAATAAATAACATTTACATAATATATATTATTTCTTTTTATTTATATATTCCTCTAATAC GTTATTATAACACGTTGTTTCTTTTAATTATAAAAAAATAATAATATTATAACTGTACTCCAAAT TTTGTTTTTTAAATTCAAAATTTTCTATTCTTTAAATATATTAAGCATAAAAAAAAAAAAAAAAA GAAAAAAAAAAAAAAAAACATATATATATTATATATATATATAAT Found at i:845233 original size:1 final size:1 Alignment explanation
Indices: 845227--845251 Score: 43 Period size: 1 Copynumber: 25.0 Consensus size: 1 845217 TATTAACGTC * 845227 TTTTTTTTTTCTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTT 845252 GGATAATATA Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 1 22 1.00 ACGTcount: A:0.00, C:0.04, G:0.00, T:0.96 Consensus pattern (1 bp): T Left flanking sequence: Indices 844727 -- 845226 AGAAACAATAAAAAAAGACAAAAAAAAAATTAACATTAAAAAGTTTTATACCTTTTATTGTGTAA AGTGTGATTATAAAAAAATTGTGAAATTAAGTCTTATGAAATTAGAAAATAATTTCTTCTTATTT TATATATATAATATCTATTCGTATATTTATTATCAGTTAATATTATATGTATCTCAGAAAAATTC TGTATAATTCTTTTTTTTTGGAAATGTATTTTTATGTTTTGTTTTAGTATTACATATATATGGAA TAATGACATATTGAATTATATATATATATATATATATATATATATATATATGTATACATATATGT GTATTTTTTTTTTTTTTTTTTTTTTTTATTTCACATATTTTACTTTATTTGCAACAAATTAATTA ATTTATAATAAAAAGAAATTTGTACTTTTTTGTTTAAATTATTTTCCATTTGTTATATATATAAA CATAAAAAAAAATTGCTTTTATATTTTTTAAGACGTATTAACGTC Right flanking sequence: Indices 845252 -- 845751 GGATAATATATATTCAATATATATATATATATTATGGTATTATATACAAATAAAAGTCCATTACC AAATTAAGCAACTTTGTGATTAAAATATAACAAATAAATAACATTTACATAATATATATTATTTC TTTTTATTTATATATTCCTCTAATACGTTATTATAACACGTTGTTTCTTTTAATTATAAAAAAAT AATAATATTATAACTGTACTCCAAATTTTGTTTTTTAAATTCAAAATTTTCTATTCTTTAAATAT ATTAAGCATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAACATATATATATTATATATATA TATAATTATTTTATTTTTATTTTATTGTTTTTTATTTTTTCATTTATGTTATATGCACTTAAAAA TTCAAACCCAATGAGAATAATATAAATATATATTTATATATTATATATGATATATTCGTTTATAT ATTATTATCAAATGTTTATTTTATCTCTCTCAATTTTTGTATTTA Found at i:845297 original size:2 final size:2 Alignment explanation
Indices: 845257--845283 Score: 33 Period size: 2 Copynumber: 14.0 Consensus size: 2 845247 TTTTTGGATA ** 845257 AT AT AT AT -T CA AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT 845284 TATGGTATTA Statistics Matches: 21, Mismatches: 3, Indels: 2 0.81 0.12 0.08 Matches are distributed among these distances: 1 1 0.05 2 20 0.95 ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48 Consensus pattern (2 bp): AT Left flanking sequence: Indices 844757 -- 845256 TAACATTAAAAAGTTTTATACCTTTTATTGTGTAAAGTGTGATTATAAAAAAATTGTGAAATTAA GTCTTATGAAATTAGAAAATAATTTCTTCTTATTTTATATATATAATATCTATTCGTATATTTAT TATCAGTTAATATTATATGTATCTCAGAAAAATTCTGTATAATTCTTTTTTTTTGGAAATGTATT TTTATGTTTTGTTTTAGTATTACATATATATGGAATAATGACATATTGAATTATATATATATATA TATATATATATATATATATATGTATACATATATGTGTATTTTTTTTTTTTTTTTTTTTTTTTATT TCACATATTTTACTTTATTTGCAACAAATTAATTAATTTATAATAAAAAGAAATTTGTACTTTTT TGTTTAAATTATTTTCCATTTGTTATATATATAAACATAAAAAAAAATTGCTTTTATATTTTTTA AGACGTATTAACGTCTTTTTTTTTTCTTTTTTTTTTTTTTGGATA Right flanking sequence: Indices 845284 -- 845783 TATGGTATTATATACAAATAAAAGTCCATTACCAAATTAAGCAACTTTGTGATTAAAATATAACA AATAAATAACATTTACATAATATATATTATTTCTTTTTATTTATATATTCCTCTAATACGTTATT ATAACACGTTGTTTCTTTTAATTATAAAAAAATAATAATATTATAACTGTACTCCAAATTTTGTT TTTTAAATTCAAAATTTTCTATTCTTTAAATATATTAAGCATAAAAAAAAAAAAAAAAAGAAAAA AAAAAAAAAAAACATATATATATTATATATATATATAATTATTTTATTTTTATTTTATTGTTTTT TATTTTTTCATTTATGTTATATGCACTTAAAAATTCAAACCCAATGAGAATAATATAAATATATA TTTATATATTATATATGATATATTCGTTTATATATTATTATCAAATGTTTATTTTATCTCTCTCA ATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAATAATTTT Found at i:845527 original size:1 final size:1 Alignment explanation
Indices: 845521--845555 Score: 63 Period size: 1 Copynumber: 35.0 Consensus size: 1 845511 TATTAAGCAT * 845521 AAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 845556 CATATATATA Statistics Matches: 32, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 1 32 1.00 ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 845021 -- 845520 TATATATATATATATATGTATACATATATGTGTATTTTTTTTTTTTTTTTTTTTTTTTATTTCAC ATATTTTACTTTATTTGCAACAAATTAATTAATTTATAATAAAAAGAAATTTGTACTTTTTTGTT TAAATTATTTTCCATTTGTTATATATATAAACATAAAAAAAAATTGCTTTTATATTTTTTAAGAC GTATTAACGTCTTTTTTTTTTCTTTTTTTTTTTTTTGGATAATATATATTCAATATATATATATA TATTATGGTATTATATACAAATAAAAGTCCATTACCAAATTAAGCAACTTTGTGATTAAAATATA ACAAATAAATAACATTTACATAATATATATTATTTCTTTTTATTTATATATTCCTCTAATACGTT ATTATAACACGTTGTTTCTTTTAATTATAAAAAAATAATAATATTATAACTGTACTCCAAATTTT GTTTTTTAAATTCAAAATTTTCTATTCTTTAAATATATTAAGCAT Right flanking sequence: Indices 845556 -- 846055 CATATATATATTATATATATATATAATTATTTTATTTTTATTTTATTGTTTTTTATTTTTTCATT TATGTTATATGCACTTAAAAATTCAAACCCAATGAGAATAATATAAATATATATTTATATATTAT ATATGATATATTCGTTTATATATTATTATCAAATGTTTATTTTATCTCTCTCAATTTTTGTATTT ACGAAGAATGTTTAATTAAATAAGAATAATTTTACATTTTGAGAACACGTTATGAAAATAATGTT AATTATAAGAAGATATAAAAATAGGTTTTGTTTTGTATAAAGGATCCTATTTATAATTTGCATAA TTTAATACAAGAATCAAAAAAAAAAATAAAAAAAATAAATAATAAAATAATAATAATAAATTATA AAAATAAAGAAATAATATGATTTAAAAAAAATATATATATATATATATATATATTTATTATTTAT TTATGGTTTTTTTTTTTTTTTTTTTTTTTTCTTTCATTATATAGA Found at i:845562 original size:2 final size:2 Alignment explanation
Indices: 845557--845580 Score: 41 Period size: 2 Copynumber: 12.5 Consensus size: 2 845547 AAAAAAAAAC 845557 AT AT AT AT AT -T AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT A 845581 ATTATTTTAT Statistics Matches: 21, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 1 1 0.05 2 20 0.95 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 845057 -- 845556 TTTTTTTTTTTTTTTTTTTTTTATTTCACATATTTTACTTTATTTGCAACAAATTAATTAATTTA TAATAAAAAGAAATTTGTACTTTTTTGTTTAAATTATTTTCCATTTGTTATATATATAAACATAA AAAAAAATTGCTTTTATATTTTTTAAGACGTATTAACGTCTTTTTTTTTTCTTTTTTTTTTTTTT GGATAATATATATTCAATATATATATATATATTATGGTATTATATACAAATAAAAGTCCATTACC AAATTAAGCAACTTTGTGATTAAAATATAACAAATAAATAACATTTACATAATATATATTATTTC TTTTTATTTATATATTCCTCTAATACGTTATTATAACACGTTGTTTCTTTTAATTATAAAAAAAT AATAATATTATAACTGTACTCCAAATTTTGTTTTTTAAATTCAAAATTTTCTATTCTTTAAATAT ATTAAGCATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAC Right flanking sequence: Indices 845581 -- 846080 ATTATTTTATTTTTATTTTATTGTTTTTTATTTTTTCATTTATGTTATATGCACTTAAAAATTCA AACCCAATGAGAATAATATAAATATATATTTATATATTATATATGATATATTCGTTTATATATTA TTATCAAATGTTTATTTTATCTCTCTCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGA ATAATTTTACATTTTGAGAACACGTTATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGG TTTTGTTTTGTATAAAGGATCCTATTTATAATTTGCATAATTTAATACAAGAATCAAAAAAAAAA ATAAAAAAAATAAATAATAAAATAATAATAATAAATTATAAAAATAAAGAAATAATATGATTTAA AAAAAATATATATATATATATATATATATTTATTATTTATTTATGGTTTTTTTTTTTTTTTTTTT TTTTTCTTTCATTATATAGATTTTTATCATTTATATAAAGGTATA Found at i:845614 original size:5 final size:5 Alignment explanation
Indices: 845582--845614 Score: 43 Period size: 5 Copynumber: 6.4 Consensus size: 5 845572 ATATATATAA * * 845582 TTATT TTATTT TTATT TTATT GTTTT TTATT TT 1 TTATT TTA-TT TTATT TTATT TTATT TTATT TT 845615 TTCATTTATG Statistics Matches: 23, Mismatches: 4, Indels: 2 0.79 0.14 0.07 Matches are distributed among these distances: 5 18 0.78 6 5 0.22 ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82 Consensus pattern (5 bp): TTATT Left flanking sequence: Indices 845082 -- 845581 TCACATATTTTACTTTATTTGCAACAAATTAATTAATTTATAATAAAAAGAAATTTGTACTTTTT TGTTTAAATTATTTTCCATTTGTTATATATATAAACATAAAAAAAAATTGCTTTTATATTTTTTA AGACGTATTAACGTCTTTTTTTTTTCTTTTTTTTTTTTTTGGATAATATATATTCAATATATATA TATATATTATGGTATTATATACAAATAAAAGTCCATTACCAAATTAAGCAACTTTGTGATTAAAA TATAACAAATAAATAACATTTACATAATATATATTATTTCTTTTTATTTATATATTCCTCTAATA CGTTATTATAACACGTTGTTTCTTTTAATTATAAAAAAATAATAATATTATAACTGTACTCCAAA TTTTGTTTTTTAAATTCAAAATTTTCTATTCTTTAAATATATTAAGCATAAAAAAAAAAAAAAAA AGAAAAAAAAAAAAAAAAACATATATATATTATATATATATATAA Right flanking sequence: Indices 845615 -- 846114 TTCATTTATGTTATATGCACTTAAAAATTCAAACCCAATGAGAATAATATAAATATATATTTATA TATTATATATGATATATTCGTTTATATATTATTATCAAATGTTTATTTTATCTCTCTCAATTTTT GTATTTACGAAGAATGTTTAATTAAATAAGAATAATTTTACATTTTGAGAACACGTTATGAAAAT AATGTTAATTATAAGAAGATATAAAAATAGGTTTTGTTTTGTATAAAGGATCCTATTTATAATTT GCATAATTTAATACAAGAATCAAAAAAAAAAATAAAAAAAATAAATAATAAAATAATAATAATAA ATTATAAAAATAAAGAAATAATATGATTTAAAAAAAATATATATATATATATATATATATTTATT ATTTATTTATGGTTTTTTTTTTTTTTTTTTTTTTTTCTTTCATTATATAGATTTTTATCATTTAT ATAAAGGTATACTTTTTTTTTTTTAGTATATTATATATATATATA Found at i:845708 original size:2 final size:2 Alignment explanation
Indices: 845661--845696 Score: 42 Period size: 2 Copynumber: 18.0 Consensus size: 2 845651 AATGAGAATA * * 845661 AT AT AA AT AT AT AT TT AT AT AT -T AT AT AT GAT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT 845697 TCGTTTATAT Statistics Matches: 28, Mismatches: 4, Indels: 4 0.78 0.11 0.11 Matches are distributed among these distances: 1 1 0.04 2 25 0.89 3 2 0.07 ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 845161 -- 845660 TCCATTTGTTATATATATAAACATAAAAAAAAATTGCTTTTATATTTTTTAAGACGTATTAACGT CTTTTTTTTTTCTTTTTTTTTTTTTTGGATAATATATATTCAATATATATATATATATTATGGTA TTATATACAAATAAAAGTCCATTACCAAATTAAGCAACTTTGTGATTAAAATATAACAAATAAAT AACATTTACATAATATATATTATTTCTTTTTATTTATATATTCCTCTAATACGTTATTATAACAC GTTGTTTCTTTTAATTATAAAAAAATAATAATATTATAACTGTACTCCAAATTTTGTTTTTTAAA TTCAAAATTTTCTATTCTTTAAATATATTAAGCATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA AAAAACATATATATATTATATATATATATAATTATTTTATTTTTATTTTATTGTTTTTTATTTTT TCATTTATGTTATATGCACTTAAAAATTCAAACCCAATGAGAATA Right flanking sequence: Indices 845697 -- 846196 TCGTTTATATATTATTATCAAATGTTTATTTTATCTCTCTCAATTTTTGTATTTACGAAGAATGT TTAATTAAATAAGAATAATTTTACATTTTGAGAACACGTTATGAAAATAATGTTAATTATAAGAA GATATAAAAATAGGTTTTGTTTTGTATAAAGGATCCTATTTATAATTTGCATAATTTAATACAAG AATCAAAAAAAAAAATAAAAAAAATAAATAATAAAATAATAATAATAAATTATAAAAATAAAGAA ATAATATGATTTAAAAAAAATATATATATATATATATATATATTTATTATTTATTTATGGTTTTT TTTTTTTTTTTTTTTTTTTCTTTCATTATATAGATTTTTATCATTTATATAAAGGTATACTTTTT TTTTTTTAGTATATTATATATATATATATATAATATAATATATATATATATATATATATATAACA TAAGTATGTAAAATTTTATACTTTAATATAAAGTTTAATTTTTTC Found at i:845902 original size:1 final size:1 Alignment explanation
Indices: 845896--845927 Score: 36 Period size: 1 Copynumber: 32.0 Consensus size: 1 845886 TACAAGAATC * * * * 845896 AAAAAAAAAAATAAAAAAAATAAATAATAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 845928 TAATAATAAT Statistics Matches: 23, Mismatches: 8, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 1 23 1.00 ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12 Consensus pattern (1 bp): A Left flanking sequence: Indices 845396 -- 845895 TTCCTCTAATACGTTATTATAACACGTTGTTTCTTTTAATTATAAAAAAATAATAATATTATAAC TGTACTCCAAATTTTGTTTTTTAAATTCAAAATTTTCTATTCTTTAAATATATTAAGCATAAAAA AAAAAAAAAAAAGAAAAAAAAAAAAAAAAACATATATATATTATATATATATATAATTATTTTAT TTTTATTTTATTGTTTTTTATTTTTTCATTTATGTTATATGCACTTAAAAATTCAAACCCAATGA GAATAATATAAATATATATTTATATATTATATATGATATATTCGTTTATATATTATTATCAAATG TTTATTTTATCTCTCTCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAATAATTTTAC ATTTTGAGAACACGTTATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGGTTTTGTTTTG TATAAAGGATCCTATTTATAATTTGCATAATTTAATACAAGAATC Right flanking sequence: Indices 845928 -- 846427 TAATAATAATAAATTATAAAAATAAAGAAATAATATGATTTAAAAAAAATATATATATATATATA TATATATTTATTATTTATTTATGGTTTTTTTTTTTTTTTTTTTTTTTTCTTTCATTATATAGATT TTTATCATTTATATAAAGGTATACTTTTTTTTTTTTAGTATATTATATATATATATATATAATAT AATATATATATATATATATATATATAACATAAGTATGTAAAATTTTATACTTTAATATAAAGTTT AATTTTTTCCTTCCTTATTGTTCCCTTATTTTATTTGTTTTTTTTTTTTATTTTATAAAAAATGG AGAATAATAAAGATAATGAAAAAAAAGGTTTAGAAACAAAAAACGAAACAATTATTGAAAAGGAA AATAAGGAAGTTGAAGAGGAAAAAGAAAAAGAATTTGAAGAAAGCGAATATAATCAAAGTATATA CAACGAAAATGATGATATTATAGATAATAAAAAGACTCAAAATGT Found at i:845932 original size:3 final size:3 Alignment explanation
Indices: 845905--845952 Score: 43 Period size: 3 Copynumber: 15.7 Consensus size: 3 845895 CAAAAAAAAA * * * * 845905 AAT AAA AAA AAT AAAT AAT AA- AAT AAT AAT AAT AAAT TAT AAA AAT 1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT 845951 AA 1 AA 845953 AGAAATAATA Statistics Matches: 36, Mismatches: 6, Indels: 6 0.75 0.12 0.12 Matches are distributed among these distances: 2 2 0.06 3 28 0.78 4 6 0.17 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (3 bp): AAT Left flanking sequence: Indices 845405 -- 845904 TACGTTATTATAACACGTTGTTTCTTTTAATTATAAAAAAATAATAATATTATAACTGTACTCCA AATTTTGTTTTTTAAATTCAAAATTTTCTATTCTTTAAATATATTAAGCATAAAAAAAAAAAAAA AAAGAAAAAAAAAAAAAAAAACATATATATATTATATATATATATAATTATTTTATTTTTATTTT ATTGTTTTTTATTTTTTCATTTATGTTATATGCACTTAAAAATTCAAACCCAATGAGAATAATAT AAATATATATTTATATATTATATATGATATATTCGTTTATATATTATTATCAAATGTTTATTTTA TCTCTCTCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAATAATTTTACATTTTGAGA ACACGTTATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGGTTTTGTTTTGTATAAAGGA TCCTATTTATAATTTGCATAATTTAATACAAGAATCAAAAAAAAA Right flanking sequence: Indices 845953 -- 846452 AGAAATAATATGATTTAAAAAAAATATATATATATATATATATATATTTATTATTTATTTATGGT TTTTTTTTTTTTTTTTTTTTTTTCTTTCATTATATAGATTTTTATCATTTATATAAAGGTATACT TTTTTTTTTTTAGTATATTATATATATATATATATAATATAATATATATATATATATATATATAT AACATAAGTATGTAAAATTTTATACTTTAATATAAAGTTTAATTTTTTCCTTCCTTATTGTTCCC TTATTTTATTTGTTTTTTTTTTTTATTTTATAAAAAATGGAGAATAATAAAGATAATGAAAAAAA AGGTTTAGAAACAAAAAACGAAACAATTATTGAAAAGGAAAATAAGGAAGTTGAAGAGGAAAAAG AAAAAGAATTTGAAGAAAGCGAATATAATCAAAGTATATACAACGAAAATGATGATATTATAGAT AATAAAAAGACTCAAAATGTTCATCTTGAAAATAATGAAGATGAT i:845983 original size:4 final size:4 Alignment explanation
Indices: 845976--846014 Score: 50 Period size: 4 Copynumber: 10.0 Consensus size: 4 845966 TTTAAAAAAA * * * 845976 ATAT ATAT ATAT ATAT ATAT ATAT TTAT -TAT TTAT TTAT 1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT 846015 GGTTTTTTTT Statistics Matches: 33, Mismatches: 1, Indels: 2 0.92 0.03 0.06 Matches are distributed among these distances: 3 3 0.09 4 30 0.91 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (4 bp): ATAT Left flanking sequence: Indices 845476 -- 845975 GTTTTTTAAATTCAAAATTTTCTATTCTTTAAATATATTAAGCATAAAAAAAAAAAAAAAAAGAA AAAAAAAAAAAAAAACATATATATATTATATATATATATAATTATTTTATTTTTATTTTATTGTT TTTTATTTTTTCATTTATGTTATATGCACTTAAAAATTCAAACCCAATGAGAATAATATAAATAT ATATTTATATATTATATATGATATATTCGTTTATATATTATTATCAAATGTTTATTTTATCTCTC TCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAATAATTTTACATTTTGAGAACACGT TATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGGTTTTGTTTTGTATAAAGGATCCTAT TTATAATTTGCATAATTTAATACAAGAATCAAAAAAAAAAATAAAAAAAATAAATAATAAAATAA TAATAATAAATTATAAAAATAAAGAAATAATATGATTTAAAAAAA Right flanking sequence: Indices 846015 -- 846514 GGTTTTTTTTTTTTTTTTTTTTTTTTCTTTCATTATATAGATTTTTATCATTTATATAAAGGTAT ACTTTTTTTTTTTTAGTATATTATATATATATATATATAATATAATATATATATATATATATATA TATAACATAAGTATGTAAAATTTTATACTTTAATATAAAGTTTAATTTTTTCCTTCCTTATTGTT CCCTTATTTTATTTGTTTTTTTTTTTTATTTTATAAAAAATGGAGAATAATAAAGATAATGAAAA AAAAGGTTTAGAAACAAAAAACGAAACAATTATTGAAAAGGAAAATAAGGAAGTTGAAGAGGAAA AAGAAAAAGAATTTGAAGAAAGCGAATATAATCAAAGTATATACAACGAAAATGATGATATTATA GATAATAAAAAGACTCAAAATGTTCATCTTGAAAATAATGAAGATGATAATGTTGAAAATCAATG TGAGGTATATATTCACGAACATAGTATAGAAGAATATGATAATAA Found at i:845987 original size:6 final size:6 Alignment explanation
Indices: 845976--846014 Score: 50 Period size: 6 Copynumber: 6.7 Consensus size: 6 845966 TTTAAAAAAA * * * 845976 ATATAT ATATAT ATATAT ATATAT TTAT-T ATTTAT TTAT 1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATAT 846015 GGTTTTTTTT Statistics Matches: 27, Mismatches: 5, Indels: 2 0.79 0.15 0.06 Matches are distributed among these distances: 5 3 0.11 6 24 0.89 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (6 bp): ATATAT Left flanking sequence: Indices 845476 -- 845975 GTTTTTTAAATTCAAAATTTTCTATTCTTTAAATATATTAAGCATAAAAAAAAAAAAAAAAAGAA AAAAAAAAAAAAAAACATATATATATTATATATATATATAATTATTTTATTTTTATTTTATTGTT TTTTATTTTTTCATTTATGTTATATGCACTTAAAAATTCAAACCCAATGAGAATAATATAAATAT ATATTTATATATTATATATGATATATTCGTTTATATATTATTATCAAATGTTTATTTTATCTCTC TCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAATAATTTTACATTTTGAGAACACGT TATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGGTTTTGTTTTGTATAAAGGATCCTAT TTATAATTTGCATAATTTAATACAAGAATCAAAAAAAAAAATAAAAAAAATAAATAATAAAATAA TAATAATAAATTATAAAAATAAAGAAATAATATGATTTAAAAAAA Right flanking sequence: Indices 846015 -- 846514 GGTTTTTTTTTTTTTTTTTTTTTTTTCTTTCATTATATAGATTTTTATCATTTATATAAAGGTAT ACTTTTTTTTTTTTAGTATATTATATATATATATATATAATATAATATATATATATATATATATA TATAACATAAGTATGTAAAATTTTATACTTTAATATAAAGTTTAATTTTTTCCTTCCTTATTGTT CCCTTATTTTATTTGTTTTTTTTTTTTATTTTATAAAAAATGGAGAATAATAAAGATAATGAAAA AAAAGGTTTAGAAACAAAAAACGAAACAATTATTGAAAAGGAAAATAAGGAAGTTGAAGAGGAAA AAGAAAAAGAATTTGAAGAAAGCGAATATAATCAAAGTATATACAACGAAAATGATGATATTATA GATAATAAAAAGACTCAAAATGTTCATCTTGAAAATAATGAAGATGATAATGTTGAAAATCAATG TGAGGTATATATTCACGAACATAGTATAGAAGAATATGATAATAA Found at i:846023 original size:1 final size:1 Alignment explanation
Indices: 846017--846044 Score: 49 Period size: 1 Copynumber: 28.0 Consensus size: 1 846007 TTATTTATGG * 846017 TTTTTTTTTTTTTTTTTTTTTTTTCTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT 846045 CATTATATAG Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 1 25 1.00 ACGTcount: A:0.00, C:0.04, G:0.00, T:0.96 Consensus pattern (1 bp): T Left flanking sequence: Indices 845517 -- 846016 GCATAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAACATATATATATTATATATATATATAA TTATTTTATTTTTATTTTATTGTTTTTTATTTTTTCATTTATGTTATATGCACTTAAAAATTCAA ACCCAATGAGAATAATATAAATATATATTTATATATTATATATGATATATTCGTTTATATATTAT TATCAAATGTTTATTTTATCTCTCTCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAA TAATTTTACATTTTGAGAACACGTTATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGGT TTTGTTTTGTATAAAGGATCCTATTTATAATTTGCATAATTTAATACAAGAATCAAAAAAAAAAA TAAAAAAAATAAATAATAAAATAATAATAATAAATTATAAAAATAAAGAAATAATATGATTTAAA AAAAATATATATATATATATATATATATTTATTATTTATTTATGG Right flanking sequence: Indices 846045 -- 846544 CATTATATAGATTTTTATCATTTATATAAAGGTATACTTTTTTTTTTTTAGTATATTATATATAT ATATATATAATATAATATATATATATATATATATATATAACATAAGTATGTAAAATTTTATACTT TAATATAAAGTTTAATTTTTTCCTTCCTTATTGTTCCCTTATTTTATTTGTTTTTTTTTTTTATT TTATAAAAAATGGAGAATAATAAAGATAATGAAAAAAAAGGTTTAGAAACAAAAAACGAAACAAT TATTGAAAAGGAAAATAAGGAAGTTGAAGAGGAAAAAGAAAAAGAATTTGAAGAAAGCGAATATA ATCAAAGTATATACAACGAAAATGATGATATTATAGATAATAAAAAGACTCAAAATGTTCATCTT GAAAATAATGAAGATGATAATGTTGAAAATCAATGTGAGGTATATATTCACGAACATAGTATAGA AGAATATGATAATAAAGATGATATAACAGGAGAAGAAAAAAGGGA Found at i:846106 original size:2 final size:2 Alignment explanation
Indices: 846096--846148 Score: 85 Period size: 2 Copynumber: 28.0 Consensus size: 2 846086 TTTTTTTTAG 846096 TA TA T- TA TA TA TA TA TA TA TA TA -A TA TA -A TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 846135 TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA 846149 ACATAAGTAT Statistics Matches: 48, Mismatches: 0, Indels: 6 0.89 0.00 0.11 Matches are distributed among these distances: 1 3 0.06 2 45 0.94 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (2 bp): TA Left flanking sequence: Indices 845596 -- 846095 TTTTATTGTTTTTTATTTTTTCATTTATGTTATATGCACTTAAAAATTCAAACCCAATGAGAATA ATATAAATATATATTTATATATTATATATGATATATTCGTTTATATATTATTATCAAATGTTTAT TTTATCTCTCTCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAATAATTTTACATTTT GAGAACACGTTATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGGTTTTGTTTTGTATAA AGGATCCTATTTATAATTTGCATAATTTAATACAAGAATCAAAAAAAAAAATAAAAAAAATAAAT AATAAAATAATAATAATAAATTATAAAAATAAAGAAATAATATGATTTAAAAAAAATATATATAT ATATATATATATATTTATTATTTATTTATGGTTTTTTTTTTTTTTTTTTTTTTTTCTTTCATTAT ATAGATTTTTATCATTTATATAAAGGTATACTTTTTTTTTTTTAG Right flanking sequence: Indices 846149 -- 846648 ACATAAGTATGTAAAATTTTATACTTTAATATAAAGTTTAATTTTTTCCTTCCTTATTGTTCCCT TATTTTATTTGTTTTTTTTTTTTATTTTATAAAAAATGGAGAATAATAAAGATAATGAAAAAAAA GGTTTAGAAACAAAAAACGAAACAATTATTGAAAAGGAAAATAAGGAAGTTGAAGAGGAAAAAGA AAAAGAATTTGAAGAAAGCGAATATAATCAAAGTATATACAACGAAAATGATGATATTATAGATA ATAAAAAGACTCAAAATGTTCATCTTGAAAATAATGAAGATGATAATGTTGAAAATCAATGTGAG GTATATATTCACGAACATAGTATAGAAGAATATGATAATAAAGATGATATAACAGGAGAAGAAAA AAGGGATTCTTTAAAAAAATCACCTTTACAATCAGAAGATATAAATAGTAATGATAGTGTTTACA AAAGAGAAGAAAATATGATGTCTGCTGAAAAAAAAAAAGACGAAG Found at i:846223 original size:5 final size:5 Alignment explanation
Indices: 846213--846243 Score: 34 Period size: 5 Copynumber: 6.8 Consensus size: 5 846203 TATTGTTCCC * 846213 TTATT TTA-T TTGTT TT-TT TT-TT TTATT TTAT 1 TTATT TTATT TTATT TTATT TTATT TTATT TTAT 846244 AAAAAATGGA Statistics Matches: 23, Mismatches: 1, Indels: 4 0.82 0.04 0.14 Matches are distributed among these distances: 4 11 0.48 5 12 0.52 ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84 Consensus pattern (5 bp): TTATT Left flanking sequence: Indices 845713 -- 846212 ATCAAATGTTTATTTTATCTCTCTCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAAT AATTTTACATTTTGAGAACACGTTATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGGTT TTGTTTTGTATAAAGGATCCTATTTATAATTTGCATAATTTAATACAAGAATCAAAAAAAAAAAT AAAAAAAATAAATAATAAAATAATAATAATAAATTATAAAAATAAAGAAATAATATGATTTAAAA AAAATATATATATATATATATATATATTTATTATTTATTTATGGTTTTTTTTTTTTTTTTTTTTT TTTCTTTCATTATATAGATTTTTATCATTTATATAAAGGTATACTTTTTTTTTTTTAGTATATTA TATATATATATATATAATATAATATATATATATATATATATATATAACATAAGTATGTAAAATTT TATACTTTAATATAAAGTTTAATTTTTTCCTTCCTTATTGTTCCC Right flanking sequence: Indices 846244 -- 846743 AAAAAATGGAGAATAATAAAGATAATGAAAAAAAAGGTTTAGAAACAAAAAACGAAACAATTATT GAAAAGGAAAATAAGGAAGTTGAAGAGGAAAAAGAAAAAGAATTTGAAGAAAGCGAATATAATCA AAGTATATACAACGAAAATGATGATATTATAGATAATAAAAAGACTCAAAATGTTCATCTTGAAA ATAATGAAGATGATAATGTTGAAAATCAATGTGAGGTATATATTCACGAACATAGTATAGAAGAA TATGATAATAAAGATGATATAACAGGAGAAGAAAAAAGGGATTCTTTAAAAAAATCACCTTTACA ATCAGAAGATATAAATAGTAATGATAGTGTTTACAAAAGAGAAGAAAATATGATGTCTGCTGAAA AAAAAAAAGACGAAGAAAATGATGATAAAAATATTAAAAATAATAAAAGAAAAATGTCAGAAGAA ATGATAACCATGAAAAGTACTAAAAAATTAAAAAATGGAGAAAGT Found at i:846231 original size:1 final size:1 Alignment explanation
Indices: 846216--846241 Score: 31 Period size: 1 Copynumber: 26.0 Consensus size: 1 846206 TGTTCCCTTA * * * 846216 TTTTATTTGTTTTTTTTTTTTATTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTT 846242 ATAAAAAATG Statistics Matches: 19, Mismatches: 6, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 1 19 1.00 ACGTcount: A:0.08, C:0.00, G:0.04, T:0.88 Consensus pattern (1 bp): T Left flanking sequence: Indices 845716 -- 846215 AAATGTTTATTTTATCTCTCTCAATTTTTGTATTTACGAAGAATGTTTAATTAAATAAGAATAAT TTTACATTTTGAGAACACGTTATGAAAATAATGTTAATTATAAGAAGATATAAAAATAGGTTTTG TTTTGTATAAAGGATCCTATTTATAATTTGCATAATTTAATACAAGAATCAAAAAAAAAAATAAA AAAAATAAATAATAAAATAATAATAATAAATTATAAAAATAAAGAAATAATATGATTTAAAAAAA ATATATATATATATATATATATATTTATTATTTATTTATGGTTTTTTTTTTTTTTTTTTTTTTTT CTTTCATTATATAGATTTTTATCATTTATATAAAGGTATACTTTTTTTTTTTTAGTATATTATAT ATATATATATATAATATAATATATATATATATATATATATATAACATAAGTATGTAAAATTTTAT ACTTTAATATAAAGTTTAATTTTTTCCTTCCTTATTGTTCCCTTA Right flanking sequence: Indices 846242 -- 846741 ATAAAAAATGGAGAATAATAAAGATAATGAAAAAAAAGGTTTAGAAACAAAAAACGAAACAATTA TTGAAAAGGAAAATAAGGAAGTTGAAGAGGAAAAAGAAAAAGAATTTGAAGAAAGCGAATATAAT CAAAGTATATACAACGAAAATGATGATATTATAGATAATAAAAAGACTCAAAATGTTCATCTTGA AAATAATGAAGATGATAATGTTGAAAATCAATGTGAGGTATATATTCACGAACATAGTATAGAAG AATATGATAATAAAGATGATATAACAGGAGAAGAAAAAAGGGATTCTTTAAAAAAATCACCTTTA CAATCAGAAGATATAAATAGTAATGATAGTGTTTACAAAAGAGAAGAAAATATGATGTCTGCTGA AAAAAAAAAAGACGAAGAAAATGATGATAAAAATATTAAAAATAATAAAAGAAAAATGTCAGAAG AAATGATAACCATGAAAAGTACTAAAAAATTAAAAAATGGAGAAA Found at i:846345 original size:6 final size:6 Alignment explanation
Indices: 846336--846350 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 846326 AGTTGAAGAG 846336 GAAAAA GAAAAA GAA 1 GAAAAA GAAAAA GAA 846351 TTTGAAGAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00 Consensus pattern (6 bp): GAAAAA Left flanking sequence: Indices 845836 -- 846335 ATAGGTTTTGTTTTGTATAAAGGATCCTATTTATAATTTGCATAATTTAATACAAGAATCAAAAA AAAAAATAAAAAAAATAAATAATAAAATAATAATAATAAATTATAAAAATAAAGAAATAATATGA TTTAAAAAAAATATATATATATATATATATATATTTATTATTTATTTATGGTTTTTTTTTTTTTT TTTTTTTTTTCTTTCATTATATAGATTTTTATCATTTATATAAAGGTATACTTTTTTTTTTTTAG TATATTATATATATATATATATAATATAATATATATATATATATATATATATAACATAAGTATGT AAAATTTTATACTTTAATATAAAGTTTAATTTTTTCCTTCCTTATTGTTCCCTTATTTTATTTGT TTTTTTTTTTTATTTTATAAAAAATGGAGAATAATAAAGATAATGAAAAAAAAGGTTTAGAAACA AAAAACGAAACAATTATTGAAAAGGAAAATAAGGAAGTTGAAGAG Right flanking sequence: Indices 846351 -- 846850 TTTGAAGAAAGCGAATATAATCAAAGTATATACAACGAAAATGATGATATTATAGATAATAAAAA GACTCAAAATGTTCATCTTGAAAATAATGAAGATGATAATGTTGAAAATCAATGTGAGGTATATA TTCACGAACATAGTATAGAAGAATATGATAATAAAGATGATATAACAGGAGAAGAAAAAAGGGAT TCTTTAAAAAAATCACCTTTACAATCAGAAGATATAAATAGTAATGATAGTGTTTACAAAAGAGA AGAAAATATGATGTCTGCTGAAAAAAAAAAAGACGAAGAAAATGATGATAAAAATATTAAAAATA ATAAAAGAAAAATGTCAGAAGAAATGATAACCATGAAAAGTACTAAAAAATTAAAAAATGGAGAA AGTAATAAAAATGATGATGAAATAAGTTATGATTATTTTGATAAGAACATTGATTTAGAAATATA TATGAATAAAATAAAAAACAATTTTAATTTATATTTAGAAGAGTG Found at i:847087 original size:5 final size:5 Alignment explanation
Indices: 847079--847092 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 847069 AATTGAAAAT 847079 AGAAA AGAAA AGAA 1 AGAAA AGAAA AGAA 847093 CTATATTAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00 Consensus pattern (5 bp): AGAAA Left flanking sequence: Indices 846579 -- 847078 ATAAATAGTAATGATAGTGTTTACAAAAGAGAAGAAAATATGATGTCTGCTGAAAAAAAAAAAGA CGAAGAAAATGATGATAAAAATATTAAAAATAATAAAAGAAAAATGTCAGAAGAAATGATAACCA TGAAAAGTACTAAAAAATTAAAAAATGGAGAAAGTAATAAAAATGATGATGAAATAAGTTATGAT TATTTTGATAAGAACATTGATTTAGAAATATATATGAATAAAATAAAAAACAATTTTAATTTATA TTTAGAAGAGTGTGAATATCAATTAAAAGATTTAAAAAATTGTTATATTGAAAACGATAAATTAA TTAAAGAAATTGTAAATGAAAATAATAGTACCATGATAGGAAATAATGAAAATATAGATGATGAA TTTGAAACAGATAAGATAAAAAACGGAACCAAAAAAACAACAAAAACGAAAGAAAATGGGGAACA TGTAGAAGATATGGAAGAAATACGAAAGAAAAATGAATTGAAAAT Right flanking sequence: Indices 847093 -- 847592 CTATATTAAATAATATTATGAACATAAGATTAATTTATAGAACAGTTGAAATATATTTATTTAGT ATGAGACAATTTATATATTTATTAAAAGAGAAGAATAATTTTATATCACATATATTGGATGAACA AATTATTATTAAAAATAATTATGAGCAAGTAATCGAAAATTTATTGGAATTTGAAGCAGACAATT ATGAAGATATAAAACATATTGTAGAAAATAAAATATTATCTATAAATGATATGTTATTAAAAAAT AATGAATATGATGAAAAATTAAAAGAATATATGTCATATTTATGTACACTACAATGTTTGCAAGA AGAAATATCACAACGTATTGATGCAAAAACAGATTTACGATTATTAATGATAAAAAAAAAAGAAA TTTCTGATAAATTTACAAAACAAAATCAAAGAAAAGATACATCATTTAATAAATTATCTTTATTT AAAAATAGTATCCAATGTATTGTTGATAAATATAATTCATTTGAT Found at i:847715 original size:6 final size:6 Alignment explanation
Indices: 847695--847717 Score: 25 Period size: 6 Copynumber: 3.8 Consensus size: 6 847685 TAAAATGCAA ** * 847695 TTTAAT TTTTTT TTTCAT TTTAA 1 TTTAAT TTTAAT TTTAAT TTTAA 847718 AGAACAAAGT Statistics Matches: 12, Mismatches: 5, Indels: 0 0.71 0.29 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74 Consensus pattern (6 bp): TTTAAT Left flanking sequence: Indices 847195 -- 847694 ATTTTATATCACATATATTGGATGAACAAATTATTATTAAAAATAATTATGAGCAAGTAATCGAA AATTTATTGGAATTTGAAGCAGACAATTATGAAGATATAAAACATATTGTAGAAAATAAAATATT ATCTATAAATGATATGTTATTAAAAAATAATGAATATGATGAAAAATTAAAAGAATATATGTCAT ATTTATGTACACTACAATGTTTGCAAGAAGAAATATCACAACGTATTGATGCAAAAACAGATTTA CGATTATTAATGATAAAAAAAAAAGAAATTTCTGATAAATTTACAAAACAAAATCAAAGAAAAGA TACATCATTTAATAAATTATCTTTATTTAAAAATAGTATCCAATGTATTGTTGATAAATATAATT CATTTGATAAAGAACTTACACATTATTTGTCATCCTTCTATTATAAAATCATGAATCATCAAATT GATTTGAGTATTAATAACATGTCCATTTTAAATAATAAAATGCAA Right flanking sequence: Indices 847718 -- 848217 AGAACAAAGTAATATAAATGATGTTTTTCAATTTATGAAATATGACGTTATTACAAAAGATAGAA ACAATGATCAAAATTTTTCTAATCGTAATGATGTTCATAATGAATATATATCCATAAAATTTTAT ACAAAAGATAATTTTGATGTTTCTATTTTACCTGATGTATCATATCTAAATCATTTTAATATACA AATAGATATTTCTTATCTATGTAAAATGGATTGTTTAGTAGCCAAAGCTAATTCTATTGATTATT TGAGATTGTATAATAATGATTGTCGATTACTTTCTGATATATATAGTAATGAAGATCACCTTCTC TTATTTTCAAATAATGCAAATGATTTTTTAAATTTTAAATATGGTTTTCCGTATTTTTGGATAAA TGCTCTTGTAGAAAAACCTTATAGTTTATCCGAAAAAAATGAACTTCCGAAAAAGGAAGAAGGAT CAACTAAAAAAGCAGAAAATAAAAATATGGATCGTAAATCCTTAT Found at