TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739986 P. falciparum 3D7 GENOMIC chr12 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2271477 ACGTcount: A:0.41, C:0.10, G:0.10, T:0.40 Found at i: i:183054 original size:3 final size:3 Alignment explanation
Indices: 183037--183107 Score: 86 Period size: 3 Copynumber: 24.0 Consensus size: 3 183027 TTTATCAACA * * * * 183037 ATT A-T ATT GTT ATT ATT ATT ATT ATC ATT ATT ATT ATT ATC ATC ATT 1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT * * * 183084 ATT ATT ATT ATC ATC ATC ATT ATT 1 ATT ATT ATT ATT ATT ATT ATT ATT 183108 GATTGAATTC Statistics Matches: 59, Mismatches: 8, Indels: 2 0.86 0.12 0.03 Matches are distributed among these distances: 2 2 0.03 3 57 0.97 ACGTcount: A:0.32, C:0.08, G:0.01, T:0.58 Consensus pattern (3 bp): ATT Left flanking sequence: Indices 182537 -- 183036 AACATATATTAATATATTTTAAAAAGTTCTTATCATATTTCAAAAGTGAACTTCCTATATCTAAT AAAACACATTTATTAAGATTTATTTTTTTACACACATTATTATTTGTTTCTAATAATTCTCCTTT GTTTTCTTTTTCTATAGTTTTACATGATATAATATCTAAAAGATATGTAGATACAAAAGGGCTAT AATGTGTTAATAAAAGTCCTGGACATACTTCATTTTTTTCAATCTCATTATTAAATGTTTTGTAG ATATCATCCTCTTTATTTATATTATCACATCTATAATCTTTAATACCAGACTTGGGATACTCATT CTTGAAGATATCCAAGTTTTCAAATTTTATTTTTTCATACATTTCAACATTTATATCTTTTAACA AATCATATTTTTTTAAAACATTTTCAATGTCCCCTTTTGTATATTTCCCTCTTCTATATATTTTA ATCGAATAATTATATAAAGATTTGTATTTTAATATTTTATCAACA Right flanking sequence: Indices 183108 -- 183607 GATTGAATTCATACGTTCAATTAAATCAAACATATTTTTTAATTTTTCATATACCTCCATATTAC TCTCGGACTCCTTTGAATTCGTAGCAGCACGTAGAAATGCTAATTCTTCGTTACATTCACATTCA TATTCTTCATCATTTACAATTTCGACTGGGTTGTTTCCTTCAGAATTATTTACATTTATATTATT TATTTTTTTTATATCCTTCATAACATTTACATCTTTTTCTTTTAATACCTCATCTGTATTCTTAT CCTCATGGTTTATCCTATACTTTGTTATTTTAAGTACGGTGGATTCGATTCCTACATCACATTGC CCATCATCAAATATTAAAAGATCTTCATTTTTAAATTCATCATACACGTGTAAAGAATTTGTAGG ACTTATGTGTTGAAATTTATTAGCTGAAGGAGCAGCTATAGGTGTGTTACATATTTTTATAATTT CTCTTGTAATCTTATTATCTGGAATTCTGACAGCACAAAATTGGG Found at i:183236 original size:6 final size:6 Alignment explanation
Indices: 183225--183242 Score: 29 Period size: 6 Copynumber: 3.0 Consensus size: 6 183215 ATTCTTCGTT * 183225 ACATTC ACATTC ATATTC 1 ACATTC ACATTC ACATTC 183243 TTCATCATTT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 6 11 1.00 ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39 Consensus pattern (6 bp): ACATTC Left flanking sequence: Indices 182725 -- 183224 GGGCTATAATGTGTTAATAAAAGTCCTGGACATACTTCATTTTTTTCAATCTCATTATTAAATGT TTTGTAGATATCATCCTCTTTATTTATATTATCACATCTATAATCTTTAATACCAGACTTGGGAT ACTCATTCTTGAAGATATCCAAGTTTTCAAATTTTATTTTTTCATACATTTCAACATTTATATCT TTTAACAAATCATATTTTTTTAAAACATTTTCAATGTCCCCTTTTGTATATTTCCCTCTTCTATA TATTTTAATCGAATAATTATATAAAGATTTGTATTTTAATATTTTATCAACAATTATATTGTTAT TATTATTATTATCATTATTATTATTATCATCATTATTATTATTATCATCATCATTATTGATTGAA TTCATACGTTCAATTAAATCAAACATATTTTTTAATTTTTCATATACCTCCATATTACTCTCGGA CTCCTTTGAATTCGTAGCAGCACGTAGAAATGCTAATTCTTCGTT Right flanking sequence: Indices 183243 -- 183742 TTCATCATTTACAATTTCGACTGGGTTGTTTCCTTCAGAATTATTTACATTTATATTATTTATTT TTTTTATATCCTTCATAACATTTACATCTTTTTCTTTTAATACCTCATCTGTATTCTTATCCTCA TGGTTTATCCTATACTTTGTTATTTTAAGTACGGTGGATTCGATTCCTACATCACATTGCCCATC ATCAAATATTAAAAGATCTTCATTTTTAAATTCATCATACACGTGTAAAGAATTTGTAGGACTTA TGTGTTGAAATTTATTAGCTGAAGGAGCAGCTATAGGTGTGTTACATATTTTTATAATTTCTCTT GTAATCTTATTATCTGGAATTCTGACAGCACAAAATTGGGTATAGGCAGTTAATATTAAAGGAGC TTCTTTTTTTGCTTTTGCTATTATGGAAAGAGGTCCTGGCCAAAAATATTTACTTAATATATAAA TAATATATTTTTCATAAATATTAATATGATATAATTGATCATAAG Found at i:183307 original size:4 final size:4 Alignment explanation
Indices: 183291--183311 Score: 26 Period size: 4 Copynumber: 5.0 Consensus size: 4 183281 AATTATTTAC * 183291 ATTT ATATT ATTT ATTT TTTT 1 ATTT AT-TT ATTT ATTT ATTT 183312 TATATCCTTC Statistics Matches: 15, Mismatches: 1, Indels: 2 0.83 0.06 0.11 Matches are distributed among these distances: 4 11 0.73 5 4 0.27 ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76 Consensus pattern (4 bp): ATTT Left flanking sequence: Indices 182791 -- 183290 TTGTAGATATCATCCTCTTTATTTATATTATCACATCTATAATCTTTAATACCAGACTTGGGATA CTCATTCTTGAAGATATCCAAGTTTTCAAATTTTATTTTTTCATACATTTCAACATTTATATCTT TTAACAAATCATATTTTTTTAAAACATTTTCAATGTCCCCTTTTGTATATTTCCCTCTTCTATAT ATTTTAATCGAATAATTATATAAAGATTTGTATTTTAATATTTTATCAACAATTATATTGTTATT ATTATTATTATCATTATTATTATTATCATCATTATTATTATTATCATCATCATTATTGATTGAAT TCATACGTTCAATTAAATCAAACATATTTTTTAATTTTTCATATACCTCCATATTACTCTCGGAC TCCTTTGAATTCGTAGCAGCACGTAGAAATGCTAATTCTTCGTTACATTCACATTCATATTCTTC ATCATTTACAATTTCGACTGGGTTGTTTCCTTCAGAATTATTTAC Right flanking sequence: Indices 183312 -- 183811 TATATCCTTCATAACATTTACATCTTTTTCTTTTAATACCTCATCTGTATTCTTATCCTCATGGT TTATCCTATACTTTGTTATTTTAAGTACGGTGGATTCGATTCCTACATCACATTGCCCATCATCA AATATTAAAAGATCTTCATTTTTAAATTCATCATACACGTGTAAAGAATTTGTAGGACTTATGTG TTGAAATTTATTAGCTGAAGGAGCAGCTATAGGTGTGTTACATATTTTTATAATTTCTCTTGTAA TCTTATTATCTGGAATTCTGACAGCACAAAATTGGGTATAGGCAGTTAATATTAAAGGAGCTTCT TTTTTTGCTTTTGCTATTATGGAAAGAGGTCCTGGCCAAAAATATTTACTTAATATATAAATAAT ATATTTTTCATAAATATTAATATGATATAATTGATCATAAGCTTGATATATATTATATACATGTG ATATTATAGGATCACTTACCGGTCTATTTTTCATTCGAAATATAT Found at i:183650 original size:6 final size:6 Alignment explanation
Indices: 183639--183651 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 183629 GAGCTTCTTT 183639 TTTTGC TTTTGC T 1 TTTTGC TTTTGC T 183652 ATTATGGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.15, G:0.15, T:0.69 Consensus pattern (6 bp): TTTTGC Left flanking sequence: Indices 183139 -- 183638 ATATTTTTTAATTTTTCATATACCTCCATATTACTCTCGGACTCCTTTGAATTCGTAGCAGCACG TAGAAATGCTAATTCTTCGTTACATTCACATTCATATTCTTCATCATTTACAATTTCGACTGGGT TGTTTCCTTCAGAATTATTTACATTTATATTATTTATTTTTTTTATATCCTTCATAACATTTACA TCTTTTTCTTTTAATACCTCATCTGTATTCTTATCCTCATGGTTTATCCTATACTTTGTTATTTT AAGTACGGTGGATTCGATTCCTACATCACATTGCCCATCATCAAATATTAAAAGATCTTCATTTT TAAATTCATCATACACGTGTAAAGAATTTGTAGGACTTATGTGTTGAAATTTATTAGCTGAAGGA GCAGCTATAGGTGTGTTACATATTTTTATAATTTCTCTTGTAATCTTATTATCTGGAATTCTGAC AGCACAAAATTGGGTATAGGCAGTTAATATTAAAGGAGCTTCTTT Right flanking sequence: Indices 183652 -- 184151 ATTATGGAAAGAGGTCCTGGCCAAAAATATTTACTTAATATATAAATAATATATTTTTCATAAAT ATTAATATGATATAATTGATCATAAGCTTGATATATATTATATACATGTGATATTATAGGATCAC TTACCGGTCTATTTTTCATTCGAAATATATTTTGTAAAGACCTCTGACTTAATGAATTACCACCT AATCCATAAACTGTCTCGGTAGGTATTCCTATTAATTTATCTCCTTCTATATGTTCTTTTAATTT CTTTCTTAAATCCTCATTTTCAAATATTTCATTCCCTTTAATTATTAACGCCATTTATTTTATTC ACTATCATAAGCAAAACTTAAACAAAATAAAATAAAAAAGGAAAAGAAAAGAAAATATTATTACT AAATATATATTTATATATTTATTTATTTATAGAATTATATATATATATATAATTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTAAATATGATTAATAATATTTTT Found at i:184014 original size:6 final size:5 Alignment explanation
Indices: 183996--184013 Score: 29 Period size: 5 Copynumber: 3.6 Consensus size: 5 183986 AGCAAAACTT * 183996 AAACA AAATA AAATA AAA 1 AAATA AAATA AAATA AAA 184014 AAGGAAAAGA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 5 12 1.00 ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11 Consensus pattern (5 bp): AAATA Left flanking sequence: Indices 183496 -- 183995 GGACTTATGTGTTGAAATTTATTAGCTGAAGGAGCAGCTATAGGTGTGTTACATATTTTTATAAT TTCTCTTGTAATCTTATTATCTGGAATTCTGACAGCACAAAATTGGGTATAGGCAGTTAATATTA AAGGAGCTTCTTTTTTTGCTTTTGCTATTATGGAAAGAGGTCCTGGCCAAAAATATTTACTTAAT ATATAAATAATATATTTTTCATAAATATTAATATGATATAATTGATCATAAGCTTGATATATATT ATATACATGTGATATTATAGGATCACTTACCGGTCTATTTTTCATTCGAAATATATTTTGTAAAG ACCTCTGACTTAATGAATTACCACCTAATCCATAAACTGTCTCGGTAGGTATTCCTATTAATTTA TCTCCTTCTATATGTTCTTTTAATTTCTTTCTTAAATCCTCATTTTCAAATATTTCATTCCCTTT AATTATTAACGCCATTTATTTTATTCACTATCATAAGCAAAACTT Right flanking sequence: Indices 184014 -- 184513 AAGGAAAAGAAAAGAAAATATTATTACTAAATATATATTTATATATTTATTTATTTATAGAATTA TATATATATATATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATGATTAATA ATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAATATTATACTTATGA TATATTTTACATTTATGATATATTACATTTTTGCTTAATAACTTTAGGCTTCCTTTTTAATCAAA AAAACAAAGAGACGACATACAAAAAAAAATATATATTTATATTTTACAACAATGGCAAAGTGTTC GTATTTAAAATTGTATATAATTAAAATATACATATATATAATAAATATAATATATATATAATATA TATAAATATATTATATTACAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATAT GAGGCATGTAAATAAAATATACATATATATATATATATATATATA Found at i:184021 original size:6 final size:6 Alignment explanation
Indices: 184012--184031 Score: 26 Period size: 6 Copynumber: 3.5 Consensus size: 6 184002 AATAAAATAA * 184012 AAAAGG AAAA-G AAAAGA AAA 1 AAAAGG AAAAGG AAAAGG AAA 184032 TATTATTACT Statistics Matches: 12, Mismatches: 1, Indels: 2 0.80 0.07 0.13 Matches are distributed among these distances: 5 5 0.42 6 7 0.58 ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00 Consensus pattern (6 bp): AAAAGG Left flanking sequence: Indices 183512 -- 184011 ATTTATTAGCTGAAGGAGCAGCTATAGGTGTGTTACATATTTTTATAATTTCTCTTGTAATCTTA TTATCTGGAATTCTGACAGCACAAAATTGGGTATAGGCAGTTAATATTAAAGGAGCTTCTTTTTT TGCTTTTGCTATTATGGAAAGAGGTCCTGGCCAAAAATATTTACTTAATATATAAATAATATATT TTTCATAAATATTAATATGATATAATTGATCATAAGCTTGATATATATTATATACATGTGATATT ATAGGATCACTTACCGGTCTATTTTTCATTCGAAATATATTTTGTAAAGACCTCTGACTTAATGA ATTACCACCTAATCCATAAACTGTCTCGGTAGGTATTCCTATTAATTTATCTCCTTCTATATGTT CTTTTAATTTCTTTCTTAAATCCTCATTTTCAAATATTTCATTCCCTTTAATTATTAACGCCATT TATTTTATTCACTATCATAAGCAAAACTTAAACAAAATAAAATAA Right flanking sequence: Indices 184032 -- 184531 TATTATTACTAAATATATATTTATATATTTATTTATTTATAGAATTATATATATATATATAATTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATGATTAATAATATTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAATATTATACTTATGATATATTTTACATTTATGA TATATTACATTTTTGCTTAATAACTTTAGGCTTCCTTTTTAATCAAAAAAACAAAGAGACGACAT ACAAAAAAAAATATATATTTATATTTTACAACAATGGCAAAGTGTTCGTATTTAAAATTGTATAT AATTAAAATATACATATATATAATAAATATAATATATATATAATATATATAAATATATTATATTA CAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATATGAGGCATGTAAATAAAAT ATACATATATATATATATATATATATATATATATAATATTATATA Found at i:184025 original size:5 final size:5 Alignment explanation
Indices: 184013--184031 Score: 31 Period size: 5 Copynumber: 3.8 Consensus size: 5 184003 ATAAAATAAA * 184013 AAAGG AAAAG AAAAG AAAA 1 AAAAG AAAAG AAAAG AAAA 184032 TATTATTACT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 5 13 1.00 ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00 Consensus pattern (5 bp): AAAAG Left flanking sequence: Indices 183513 -- 184012 TTTATTAGCTGAAGGAGCAGCTATAGGTGTGTTACATATTTTTATAATTTCTCTTGTAATCTTAT TATCTGGAATTCTGACAGCACAAAATTGGGTATAGGCAGTTAATATTAAAGGAGCTTCTTTTTTT GCTTTTGCTATTATGGAAAGAGGTCCTGGCCAAAAATATTTACTTAATATATAAATAATATATTT TTCATAAATATTAATATGATATAATTGATCATAAGCTTGATATATATTATATACATGTGATATTA TAGGATCACTTACCGGTCTATTTTTCATTCGAAATATATTTTGTAAAGACCTCTGACTTAATGAA TTACCACCTAATCCATAAACTGTCTCGGTAGGTATTCCTATTAATTTATCTCCTTCTATATGTTC TTTTAATTTCTTTCTTAAATCCTCATTTTCAAATATTTCATTCCCTTTAATTATTAACGCCATTT ATTTTATTCACTATCATAAGCAAAACTTAAACAAAATAAAATAAA Right flanking sequence: Indices 184032 -- 184531 TATTATTACTAAATATATATTTATATATTTATTTATTTATAGAATTATATATATATATATAATTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATGATTAATAATATTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAATATTATACTTATGATATATTTTACATTTATGA TATATTACATTTTTGCTTAATAACTTTAGGCTTCCTTTTTAATCAAAAAAACAAAGAGACGACAT ACAAAAAAAAATATATATTTATATTTTACAACAATGGCAAAGTGTTCGTATTTAAAATTGTATAT AATTAAAATATACATATATATAATAAATATAATATATATATAATATATATAAATATATTATATTA CAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATATGAGGCATGTAAATAAAAT ATACATATATATATATATATATATATATATATATAATATTATATA Found at i:184051 original size:2 final size:2 Alignment explanation
Indices: 184044--184092 Score: 49 Period size: 2 Copynumber: 24.5 Consensus size: 2 184034 TTATTACTAA * * * * * * * 184044 AT AT AT AT TT AT AT AT TT AT TT AT TT AT AG AA TT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 184086 AT AT AT A 1 AT AT AT A 184093 ATTTTTTTTT Statistics Matches: 34, Mismatches: 13, Indels: 0 0.72 0.28 0.00 Matches are distributed among these distances: 2 34 1.00 ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55 Consensus pattern (2 bp): AT Left flanking sequence: Indices 183544 -- 184043 TTACATATTTTTATAATTTCTCTTGTAATCTTATTATCTGGAATTCTGACAGCACAAAATTGGGT ATAGGCAGTTAATATTAAAGGAGCTTCTTTTTTTGCTTTTGCTATTATGGAAAGAGGTCCTGGCC AAAAATATTTACTTAATATATAAATAATATATTTTTCATAAATATTAATATGATATAATTGATCA TAAGCTTGATATATATTATATACATGTGATATTATAGGATCACTTACCGGTCTATTTTTCATTCG AAATATATTTTGTAAAGACCTCTGACTTAATGAATTACCACCTAATCCATAAACTGTCTCGGTAG GTATTCCTATTAATTTATCTCCTTCTATATGTTCTTTTAATTTCTTTCTTAAATCCTCATTTTCA AATATTTCATTCCCTTTAATTATTAACGCCATTTATTTTATTCACTATCATAAGCAAAACTTAAA CAAAATAAAATAAAAAAGGAAAAGAAAAGAAAATATTATTACTAA Right flanking sequence: Indices 184093 -- 184592 ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATGATTAATAATATTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAATATTATACTTATGATATATTTTACATTT ATGATATATTACATTTTTGCTTAATAACTTTAGGCTTCCTTTTTAATCAAAAAAACAAAGAGACG ACATACAAAAAAAAATATATATTTATATTTTACAACAATGGCAAAGTGTTCGTATTTAAAATTGT ATATAATTAAAATATACATATATATAATAAATATAATATATATATAATATATATAAATATATTAT ATTACAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATATGAGGCATGTAAATA AAATATACATATATATATATATATATATATATATATATAATATTATATATACATTATTTATTTTT TTAAAAAAAAGAACAGATGTAACATCATATTTTAATTAACAAAAA Found at i:184064 original size:4 final size:4 Alignment explanation
Indices: 184045--184128 Score: 42 Period size: 4 Copynumber: 21.2 Consensus size: 4 184035 TATTACTAAA * * * * * * * * 184045 TATA TATT TATA TATT TATT TATT TATA GAAT TATA TATA TATA TA-T 1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT * * * * * * * * * 184092 AATT TTTT TTTT TTTT TTTT TTTT TTTT TTTT TTTT T 1 TATT TATT TATT TATT TATT TATT TATT TATT TATT T 184129 TAAATATGAT Statistics Matches: 65, Mismatches: 14, Indels: 2 0.80 0.17 0.02 Matches are distributed among these distances: 3 1 0.02 4 64 0.98 ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74 Consensus pattern (4 bp): TATT Left flanking sequence: Indices 183545 -- 184044 TACATATTTTTATAATTTCTCTTGTAATCTTATTATCTGGAATTCTGACAGCACAAAATTGGGTA TAGGCAGTTAATATTAAAGGAGCTTCTTTTTTTGCTTTTGCTATTATGGAAAGAGGTCCTGGCCA AAAATATTTACTTAATATATAAATAATATATTTTTCATAAATATTAATATGATATAATTGATCAT AAGCTTGATATATATTATATACATGTGATATTATAGGATCACTTACCGGTCTATTTTTCATTCGA AATATATTTTGTAAAGACCTCTGACTTAATGAATTACCACCTAATCCATAAACTGTCTCGGTAGG TATTCCTATTAATTTATCTCCTTCTATATGTTCTTTTAATTTCTTTCTTAAATCCTCATTTTCAA ATATTTCATTCCCTTTAATTATTAACGCCATTTATTTTATTCACTATCATAAGCAAAACTTAAAC AAAATAAAATAAAAAAGGAAAAGAAAAGAAAATATTATTACTAAA Right flanking sequence: Indices 184129 -- 184628 TAAATATGATTAATAATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAA ATATTATACTTATGATATATTTTACATTTATGATATATTACATTTTTGCTTAATAACTTTAGGCT TCCTTTTTAATCAAAAAAACAAAGAGACGACATACAAAAAAAAATATATATTTATATTTTACAAC AATGGCAAAGTGTTCGTATTTAAAATTGTATATAATTAAAATATACATATATATAATAAATATAA TATATATATAATATATATAAATATATTATATTACAAATATGTCAAAAAAAAAATACCACATGATG ATGAAGCTACGATATGAGGCATGTAAATAAAATATACATATATATATATATATATATATATATAT ATAATATTATATATACATTATTTATTTTTTTAAAAAAAAGAACAGATGTAACATCATATTTTAAT TAACAAAAAAAATAAAATAAATTAATAATAATAATAAATAATAAA Found at i:184100 original size:1 final size:1 Alignment explanation
Indices: 184094--184191 Score: 112 Period size: 1 Copynumber: 98.0 Consensus size: 1 184084 ATATATATAA *** * ** ** ** * 184094 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATGATTAATAATATTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT * 184159 TTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 184192 AAATATTATA Statistics Matches: 82, Mismatches: 15, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 1 82 1.00 ACGTcount: A:0.10, C:0.01, G:0.01, T:0.88 Consensus pattern (1 bp): T Left flanking sequence: Indices 183594 -- 184093 AGCACAAAATTGGGTATAGGCAGTTAATATTAAAGGAGCTTCTTTTTTTGCTTTTGCTATTATGG AAAGAGGTCCTGGCCAAAAATATTTACTTAATATATAAATAATATATTTTTCATAAATATTAATA TGATATAATTGATCATAAGCTTGATATATATTATATACATGTGATATTATAGGATCACTTACCGG TCTATTTTTCATTCGAAATATATTTTGTAAAGACCTCTGACTTAATGAATTACCACCTAATCCAT AAACTGTCTCGGTAGGTATTCCTATTAATTTATCTCCTTCTATATGTTCTTTTAATTTCTTTCTT AAATCCTCATTTTCAAATATTTCATTCCCTTTAATTATTAACGCCATTTATTTTATTCACTATCA TAAGCAAAACTTAAACAAAATAAAATAAAAAAGGAAAAGAAAAGAAAATATTATTACTAAATATA TATTTATATATTTATTTATTTATAGAATTATATATATATATATAA Right flanking sequence: Indices 184192 -- 184691 AAATATTATACTTATGATATATTTTACATTTATGATATATTACATTTTTGCTTAATAACTTTAGG CTTCCTTTTTAATCAAAAAAACAAAGAGACGACATACAAAAAAAAATATATATTTATATTTTACA ACAATGGCAAAGTGTTCGTATTTAAAATTGTATATAATTAAAATATACATATATATAATAAATAT AATATATATATAATATATATAAATATATTATATTACAAATATGTCAAAAAAAAAATACCACATGA TGATGAAGCTACGATATGAGGCATGTAAATAAAATATACATATATATATATATATATATATATAT ATATAATATTATATATACATTATTTATTTTTTTAAAAAAAAGAACAGATGTAACATCATATTTTA ATTAACAAAAAAAATAAAATAAATTAATAATAATAATAAATAATAAATAATATTTAAATAAATAT ATATATTTTTTATAATTATACCTATACAAATGTTTCAAATACATT Found at i:184316 original size:6 final size:6 Alignment explanation
Indices: 184305--184317 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 184295 AAAAAAAATA 184305 TATATT TATATT T 1 TATATT TATATT T 184318 TACAACAATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69 Consensus pattern (6 bp): TATATT Left flanking sequence: Indices 183805 -- 184304 AATATATTTTGTAAAGACCTCTGACTTAATGAATTACCACCTAATCCATAAACTGTCTCGGTAGG TATTCCTATTAATTTATCTCCTTCTATATGTTCTTTTAATTTCTTTCTTAAATCCTCATTTTCAA ATATTTCATTCCCTTTAATTATTAACGCCATTTATTTTATTCACTATCATAAGCAAAACTTAAAC AAAATAAAATAAAAAAGGAAAAGAAAAGAAAATATTATTACTAAATATATATTTATATATTTATT TATTTATAGAATTATATATATATATATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT AAATATGATTAATAATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAA TATTATACTTATGATATATTTTACATTTATGATATATTACATTTTTGCTTAATAACTTTAGGCTT CCTTTTTAATCAAAAAAACAAAGAGACGACATACAAAAAAAAATA Right flanking sequence: Indices 184318 -- 184817 TACAACAATGGCAAAGTGTTCGTATTTAAAATTGTATATAATTAAAATATACATATATATAATAA ATATAATATATATATAATATATATAAATATATTATATTACAAATATGTCAAAAAAAAAATACCAC ATGATGATGAAGCTACGATATGAGGCATGTAAATAAAATATACATATATATATATATATATATAT ATATATATAATATTATATATACATTATTTATTTTTTTAAAAAAAAGAACAGATGTAACATCATAT TTTAATTAACAAAAAAAATAAAATAAATTAATAATAATAATAAATAATAAATAATATTTAAATAA ATATATATATTTTTTATAATTATACCTATACAAATGTTTCAAATACATTATATATATTTTATATT ATGTATATATTTATAACAAGTGGGAGCAAAAAAAAAAATTAAAAAATTATATCACAAGTGAACAC ATTTGGTTGGGGTTATATTATTATTATTCAACTTAAAAGAAAAAA Found at i:184375 original size:2 final size:2 Alignment explanation
Indices: 184364--184419 Score: 63 Period size: 2 Copynumber: 30.0 Consensus size: 2 184354 TATAATTAAA * * 184364 AT AT AC AT AT AT AT A- AT AA AT AT A- AT AT AT AT AT A- AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT * 184403 AT AT AA AT AT AT -T AT AT 1 AT AT AT AT AT AT AT AT AT 184420 TACAAATATG Statistics Matches: 44, Mismatches: 6, Indels: 8 0.76 0.10 0.14 Matches are distributed among these distances: 1 4 0.09 2 40 0.91 ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43 Consensus pattern (2 bp): AT Left flanking sequence: Indices 183864 -- 184363 GGTAGGTATTCCTATTAATTTATCTCCTTCTATATGTTCTTTTAATTTCTTTCTTAAATCCTCAT TTTCAAATATTTCATTCCCTTTAATTATTAACGCCATTTATTTTATTCACTATCATAAGCAAAAC TTAAACAAAATAAAATAAAAAAGGAAAAGAAAAGAAAATATTATTACTAAATATATATTTATATA TTTATTTATTTATAGAATTATATATATATATATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTAAATATGATTAATAATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTT TTTAAATATTATACTTATGATATATTTTACATTTATGATATATTACATTTTTGCTTAATAACTTT AGGCTTCCTTTTTAATCAAAAAAACAAAGAGACGACATACAAAAAAAAATATATATTTATATTTT ACAACAATGGCAAAGTGTTCGTATTTAAAATTGTATATAATTAAA Right flanking sequence: Indices 184420 -- 184919 TACAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATATGAGGCATGTAAATAAA ATATACATATATATATATATATATATATATATATATAATATTATATATACATTATTTATTTTTTT AAAAAAAAGAACAGATGTAACATCATATTTTAATTAACAAAAAAAATAAAATAAATTAATAATAA TAATAAATAATAAATAATATTTAAATAAATATATATATTTTTTATAATTATACCTATACAAATGT TTCAAATACATTATATATATTTTATATTATGTATATATTTATAACAAGTGGGAGCAAAAAAAAAA ATTAAAAAATTATATCACAAGTGAACACATTTGGTTGGGGTTATATTATTATTATTCAACTTAAA AGAAAAAAAATTAAATCATATAAAGAAAAAATATACATATATATATATATATATATATATATATA TATATATAGGAAAAATAAATAAAAGTATAAATTATTATGAATGAA Found at i:184498 original size:2 final size:2 Alignment explanation
Indices: 184485--184533 Score: 77 Period size: 2 Copynumber: 25.5 Consensus size: 2 184475 TGTAAATAAA * 184485 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 184526 -T AT AT AT A 1 AT AT AT AT A 184534 CATTATTTAT Statistics Matches: 43, Mismatches: 2, Indels: 4 0.88 0.04 0.08 Matches are distributed among these distances: 1 2 0.05 2 41 0.95 ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47 Consensus pattern (2 bp): AT Left flanking sequence: Indices 183985 -- 184484 AAGCAAAACTTAAACAAAATAAAATAAAAAAGGAAAAGAAAAGAAAATATTATTACTAAATATAT ATTTATATATTTATTTATTTATAGAATTATATATATATATATAATTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTAAATATGATTAATAATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTCTTTTTTTTTAAATATTATACTTATGATATATTTTACATTTATGATATATTACATTTTTGCTT AATAACTTTAGGCTTCCTTTTTAATCAAAAAAACAAAGAGACGACATACAAAAAAAAATATATAT TTATATTTTACAACAATGGCAAAGTGTTCGTATTTAAAATTGTATATAATTAAAATATACATATA TATAATAAATATAATATATATATAATATATATAAATATATTATATTACAAATATGTCAAAAAAAA AATACCACATGATGATGAAGCTACGATATGAGGCATGTAAATAAA Right flanking sequence: Indices 184534 -- 185033 CATTATTTATTTTTTTAAAAAAAAGAACAGATGTAACATCATATTTTAATTAACAAAAAAAATAA AATAAATTAATAATAATAATAAATAATAAATAATATTTAAATAAATATATATATTTTTTATAATT ATACCTATACAAATGTTTCAAATACATTATATATATTTTATATTATGTATATATTTATAACAAGT GGGAGCAAAAAAAAAAATTAAAAAATTATATCACAAGTGAACACATTTGGTTGGGGTTATATTAT TATTATTCAACTTAAAAGAAAAAAAATTAAATCATATAAAGAAAAAATATACATATATATATATA TATATATATATATATATATATATAGGAAAAATAAATAAAAGTATAAATTATTATGAATGAACAAA AAAAAGAAAATATAAATATTAAAAATATTAGTAATCATAATAATTCAGATGGAAAAGAAAAGTCT TCCATTCCGTCAAAAAATGGGAGTTGGTACTATCCATCCCAGAAA Found at i:184605 original size:4 final size:4 Alignment explanation
Indices: 184589--184649 Score: 43 Period size: 4 Copynumber: 16.2 Consensus size: 4 184579 TTAATTAACA * * 184589 AAAA AAAT AAAAT AAAT TAAT -AAT -AAT -AAT AAAT -AAT AAAT -AAT 1 AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT ** * 184633 ATTT AAAT AAAT ATAT A 1 AAAT AAAT AAAT AAAT A 184650 TATTTTTTAT Statistics Matches: 46, Mismatches: 7, Indels: 8 0.75 0.11 0.13 Matches are distributed among these distances: 3 15 0.33 4 27 0.59 5 4 0.09 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (4 bp): AAAT Left flanking sequence: Indices 184089 -- 184588 TATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATGATTAATAATATTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAATATTATACTTATGATATATTTTAC ATTTATGATATATTACATTTTTGCTTAATAACTTTAGGCTTCCTTTTTAATCAAAAAAACAAAGA GACGACATACAAAAAAAAATATATATTTATATTTTACAACAATGGCAAAGTGTTCGTATTTAAAA TTGTATATAATTAAAATATACATATATATAATAAATATAATATATATATAATATATATAAATATA TTATATTACAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATATGAGGCATGTA AATAAAATATACATATATATATATATATATATATATATATATAATATTATATATACATTATTTAT TTTTTTAAAAAAAAGAACAGATGTAACATCATATTTTAATTAACA Right flanking sequence: Indices 184650 -- 185149 TATTTTTTATAATTATACCTATACAAATGTTTCAAATACATTATATATATTTTATATTATGTATA TATTTATAACAAGTGGGAGCAAAAAAAAAAATTAAAAAATTATATCACAAGTGAACACATTTGGT TGGGGTTATATTATTATTATTCAACTTAAAAGAAAAAAAATTAAATCATATAAAGAAAAAATATA CATATATATATATATATATATATATATATATATATATAGGAAAAATAAATAAAAGTATAAATTAT TATGAATGAACAAAAAAAAGAAAATATAAATATTAAAAATATTAGTAATCATAATAATTCAGATG GAAAAGAAAAGTCTTCCATTCCGTCAAAAAATGGGAGTTGGTACTATCCATCCCAGAAACAATTT TATAACACAACAAAAAAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATT CATATATATATAATATATAATATATATAATATATATATGTTATAT Found at i:184612 original size:3 final size:3 Alignment explanation
Indices: 184594--184633 Score: 41 Period size: 3 Copynumber: 13.3 Consensus size: 3 184584 TAACAAAAAA * 184594 AAT AA- AAT AA- ATT AAT AAT AAT AAT AAAT AAT AAAT AAT A 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT -AAT AAT A 184634 TTTAAATAAA Statistics Matches: 31, Mismatches: 2, Indels: 8 0.76 0.05 0.20 Matches are distributed among these distances: 2 3 0.10 3 22 0.71 4 6 0.19 ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30 Consensus pattern (3 bp): AAT Left flanking sequence: Indices 184094 -- 184593 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATATGATTAATAATATTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAATATTATACTTATGATATATTTTACATTTA TGATATATTACATTTTTGCTTAATAACTTTAGGCTTCCTTTTTAATCAAAAAAACAAAGAGACGA CATACAAAAAAAAATATATATTTATATTTTACAACAATGGCAAAGTGTTCGTATTTAAAATTGTA TATAATTAAAATATACATATATATAATAAATATAATATATATATAATATATATAAATATATTATA TTACAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATATGAGGCATGTAAATAA AATATACATATATATATATATATATATATATATATATAATATTATATATACATTATTTATTTTTT TAAAAAAAAGAACAGATGTAACATCATATTTTAATTAACAAAAAA Right flanking sequence: Indices 184634 -- 185133 TTTAAATAAATATATATATTTTTTATAATTATACCTATACAAATGTTTCAAATACATTATATATA TTTTATATTATGTATATATTTATAACAAGTGGGAGCAAAAAAAAAAATTAAAAAATTATATCACA AGTGAACACATTTGGTTGGGGTTATATTATTATTATTCAACTTAAAAGAAAAAAAATTAAATCAT ATAAAGAAAAAATATACATATATATATATATATATATATATATATATATATATAGGAAAAATAAA TAAAAGTATAAATTATTATGAATGAACAAAAAAAAGAAAATATAAATATTAAAAATATTAGTAAT CATAATAATTCAGATGGAAAAGAAAAGTCTTCCATTCCGTCAAAAAATGGGAGTTGGTACTATCC ATCCCAGAAACAATTTTATAACACAACAAAAAAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAATTCATATATATATAATATATAATATATATAA Found at i:184698 original size:2 final size:2 Alignment explanation
Indices: 184691--184722 Score: 29 Period size: 2 Copynumber: 17.0 Consensus size: 2 184681 TCAAATACAT * * * 184691 TA TA TA TA T- TT TA TA T- TA TG TA TA TA TT TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 184723 ACAAGTGGGA Statistics Matches: 23, Mismatches: 5, Indels: 4 0.72 0.16 0.12 Matches are distributed among these distances: 1 2 0.09 2 21 0.91 ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59 Consensus pattern (2 bp): TA Left flanking sequence: Indices 184191 -- 184690 TAAATATTATACTTATGATATATTTTACATTTATGATATATTACATTTTTGCTTAATAACTTTAG GCTTCCTTTTTAATCAAAAAAACAAAGAGACGACATACAAAAAAAAATATATATTTATATTTTAC AACAATGGCAAAGTGTTCGTATTTAAAATTGTATATAATTAAAATATACATATATATAATAAATA TAATATATATATAATATATATAAATATATTATATTACAAATATGTCAAAAAAAAAATACCACATG ATGATGAAGCTACGATATGAGGCATGTAAATAAAATATACATATATATATATATATATATATATA TATATAATATTATATATACATTATTTATTTTTTTAAAAAAAAGAACAGATGTAACATCATATTTT AATTAACAAAAAAAATAAAATAAATTAATAATAATAATAAATAATAAATAATATTTAAATAAATA TATATATTTTTTATAATTATACCTATACAAATGTTTCAAATACAT Right flanking sequence: Indices 184723 -- 185222 ACAAGTGGGAGCAAAAAAAAAAATTAAAAAATTATATCACAAGTGAACACATTTGGTTGGGGTTA TATTATTATTATTCAACTTAAAAGAAAAAAAATTAAATCATATAAAGAAAAAATATACATATATA TATATATATATATATATATATATATATATAGGAAAAATAAATAAAAGTATAAATTATTATGAATG AACAAAAAAAAGAAAATATAAATATTAAAAATATTAGTAATCATAATAATTCAGATGGAAAAGAA AAGTCTTCCATTCCGTCAAAAAATGGGAGTTGGTACTATCCATCCCAGAAACAATTTTATAACAC AACAAAAAAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCATATATA TATAATATATAATATATATAATATATATATGTTATATTATTCATTTTGTGTATTACACAATATGA ATATATGCACAAAATTAATAATCTTCATTAATATCGCATAATAAT Found at i:184796 original size:3 final size:3 Alignment explanation
Indices: 184788--184800 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 184778 GTTGGGGTTA 184788 TAT TAT TAT TAT T 1 TAT TAT TAT TAT T 184801 CAACTTAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69 Consensus pattern (3 bp): TAT Left flanking sequence: Indices 184288 -- 184787 ACATACAAAAAAAAATATATATTTATATTTTACAACAATGGCAAAGTGTTCGTATTTAAAATTGT ATATAATTAAAATATACATATATATAATAAATATAATATATATATAATATATATAAATATATTAT ATTACAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATATGAGGCATGTAAATA AAATATACATATATATATATATATATATATATATATATAATATTATATATACATTATTTATTTTT TTAAAAAAAAGAACAGATGTAACATCATATTTTAATTAACAAAAAAAATAAAATAAATTAATAAT AATAATAAATAATAAATAATATTTAAATAAATATATATATTTTTTATAATTATACCTATACAAAT GTTTCAAATACATTATATATATTTTATATTATGTATATATTTATAACAAGTGGGAGCAAAAAAAA AAATTAAAAAATTATATCACAAGTGAACACATTTGGTTGGGGTTA Right flanking sequence: Indices 184801 -- 185300 CAACTTAAAAGAAAAAAAATTAAATCATATAAAGAAAAAATATACATATATATATATATATATAT ATATATATATATATATAGGAAAAATAAATAAAAGTATAAATTATTATGAATGAACAAAAAAAAGA AAATATAAATATTAAAAATATTAGTAATCATAATAATTCAGATGGAAAAGAAAAGTCTTCCATTC CGTCAAAAAATGGGAGTTGGTACTATCCATCCCAGAAACAATTTTATAACACAACAAAAAAAAAA GGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCATATATATATAATATATAAT ATATATAATATATATATGTTATATTATTCATTTTGTGTATTACACAATATGAATATATGCACAAA ATTAATAATCTTCATTAATATCGCATAATAATTTGTAGGTTACTCCTTCTCTCAAGAAGATTTAA ATATGGCCTTAAAAATTCACAATGCTGTCAATGAAGAAACATGGA Found at i:184851 original size:2 final size:2 Alignment explanation
Indices: 184840--184882 Score: 79 Period size: 2 Copynumber: 21.5 Consensus size: 2 184830 TAAAGAAAAA * 184840 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 184882 A 1 A 184883 GGAAAAATAA Statistics Matches: 39, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 2 39 1.00 ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47 Consensus pattern (2 bp): AT Left flanking sequence: Indices 184340 -- 184839 TATTTAAAATTGTATATAATTAAAATATACATATATATAATAAATATAATATATATATAATATAT ATAAATATATTATATTACAAATATGTCAAAAAAAAAATACCACATGATGATGAAGCTACGATATG AGGCATGTAAATAAAATATACATATATATATATATATATATATATATATATAATATTATATATAC ATTATTTATTTTTTTAAAAAAAAGAACAGATGTAACATCATATTTTAATTAACAAAAAAAATAAA ATAAATTAATAATAATAATAAATAATAAATAATATTTAAATAAATATATATATTTTTTATAATTA TACCTATACAAATGTTTCAAATACATTATATATATTTTATATTATGTATATATTTATAACAAGTG GGAGCAAAAAAAAAAATTAAAAAATTATATCACAAGTGAACACATTTGGTTGGGGTTATATTATT ATTATTCAACTTAAAAGAAAAAAAATTAAATCATATAAAGAAAAA Right flanking sequence: Indices 184883 -- 185382 GGAAAAATAAATAAAAGTATAAATTATTATGAATGAACAAAAAAAAGAAAATATAAATATTAAAA ATATTAGTAATCATAATAATTCAGATGGAAAAGAAAAGTCTTCCATTCCGTCAAAAAATGGGAGT TGGTACTATCCATCCCAGAAACAATTTTATAACACAACAAAAAAAAAAGGTAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAATTCATATATATATAATATATAATATATATAATATATATAT GTTATATTATTCATTTTGTGTATTACACAATATGAATATATGCACAAAATTAATAATCTTCATTA ATATCGCATAATAATTTGTAGGTTACTCCTTCTCTCAAGAAGATTTAAATATGGCCTTAAAAATT CACAATGCTGTCAATGAAGAAACATGGAATAAAATTATGAAAAAAGAACAAAAATATTTCGACAT ATGTAAAGAACAAAAATTAATAAAGTTCGTAGGATATCCTACGAA Found at i:185057 original size:1 final size:1 Alignment explanation
Indices: 185051--185102 Score: 83 Period size: 1 Copynumber: 52.0 Consensus size: 1 185041 ATAACACAAC *** 185051 AAAAAAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 185103 TTCATATATA Statistics Matches: 48, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 1 48 1.00 ACGTcount: A:0.94, C:0.00, G:0.04, T:0.02 Consensus pattern (1 bp): A Left flanking sequence: Indices 184551 -- 185050 AAAAAAAGAACAGATGTAACATCATATTTTAATTAACAAAAAAAATAAAATAAATTAATAATAAT AATAAATAATAAATAATATTTAAATAAATATATATATTTTTTATAATTATACCTATACAAATGTT TCAAATACATTATATATATTTTATATTATGTATATATTTATAACAAGTGGGAGCAAAAAAAAAAA TTAAAAAATTATATCACAAGTGAACACATTTGGTTGGGGTTATATTATTATTATTCAACTTAAAA GAAAAAAAATTAAATCATATAAAGAAAAAATATACATATATATATATATATATATATATATATAT ATATATAGGAAAAATAAATAAAAGTATAAATTATTATGAATGAACAAAAAAAAGAAAATATAAAT ATTAAAAATATTAGTAATCATAATAATTCAGATGGAAAAGAAAAGTCTTCCATTCCGTCAAAAAA TGGGAGTTGGTACTATCCATCCCAGAAACAATTTTATAACACAAC Right flanking sequence: Indices 185103 -- 185602 TTCATATATATATAATATATAATATATATAATATATATATGTTATATTATTCATTTTGTGTATTA CACAATATGAATATATGCACAAAATTAATAATCTTCATTAATATCGCATAATAATTTGTAGGTTA CTCCTTCTCTCAAGAAGATTTAAATATGGCCTTAAAAATTCACAATGCTGTCAATGAAGAAACAT GGAATAAAATTATGAAAAAAGAACAAAAATATTTCGACATATGTAAAGAACAAAAATTAATAAAG TTCGTAGGATATCCTACGAAACTATCTATTAAAGCTTTTATGTTAACACTCATAGGTTATAACAA ACCTTTTGATAGACATGAGTGGTACATAGACAGATGTGGAAATACAATCAAGTAAAAATAAAACA TAAATAATTAATTAAAAGAAAATCACACAATTATATATATATATATATATATATATATATATATA TATATTTATACATACATATATATATTTTATGATTACACTTTATTT Found at i:185111 original size:2 final size:2 Alignment explanation
Indices: 185106--185142 Score: 53 Period size: 2 Copynumber: 20.0 Consensus size: 2 185096 AAAAAAATTC 185106 AT AT AT AT AT A- AT AT AT A- AT AT AT AT A- AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 185143 GTTATATTAT Statistics Matches: 32, Mismatches: 0, Indels: 6 0.84 0.00 0.16 Matches are distributed among these distances: 1 3 0.09 2 29 0.91 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (2 bp): AT Left flanking sequence: Indices 184606 -- 185105 TAATAATAATAATAAATAATAAATAATATTTAAATAAATATATATATTTTTTATAATTATACCTA TACAAATGTTTCAAATACATTATATATATTTTATATTATGTATATATTTATAACAAGTGGGAGCA AAAAAAAAAATTAAAAAATTATATCACAAGTGAACACATTTGGTTGGGGTTATATTATTATTATT CAACTTAAAAGAAAAAAAATTAAATCATATAAAGAAAAAATATACATATATATATATATATATAT ATATATATATATATATAGGAAAAATAAATAAAAGTATAAATTATTATGAATGAACAAAAAAAAGA AAATATAAATATTAAAAATATTAGTAATCATAATAATTCAGATGGAAAAGAAAAGTCTTCCATTC CGTCAAAAAATGGGAGTTGGTACTATCCATCCCAGAAACAATTTTATAACACAACAAAAAAAAAA GGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTC Right flanking sequence: Indices 185143 -- 185642 GTTATATTATTCATTTTGTGTATTACACAATATGAATATATGCACAAAATTAATAATCTTCATTA ATATCGCATAATAATTTGTAGGTTACTCCTTCTCTCAAGAAGATTTAAATATGGCCTTAAAAATT CACAATGCTGTCAATGAAGAAACATGGAATAAAATTATGAAAAAAGAACAAAAATATTTCGACAT ATGTAAAGAACAAAAATTAATAAAGTTCGTAGGATATCCTACGAAACTATCTATTAAAGCTTTTA TGTTAACACTCATAGGTTATAACAAACCTTTTGATAGACATGAGTGGTACATAGACAGATGTGGA AATACAATCAAGTAAAAATAAAACATAAATAATTAATTAAAAGAAAATCACACAATTATATATAT ATATATATATATATATATATATATATATATTTATACATACATATATATATTTTATGATTACACTT TATTTTTACATTAGATATATTATTGATTACTATGATGGGAAAAAA Found at i:185529 original size:2 final size:2 Alignment explanation
Indices: 185524--185582 Score: 97 Period size: 2 Copynumber: 29.5 Consensus size: 2 185514 ATCACACAAT * 185524 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA * * 185566 TA CA TA CA TA TA TA TA T 1 TA TA TA TA TA TA TA TA T 185583 TTTATGATTA Statistics Matches: 51, Mismatches: 6, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 2 51 1.00 ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49 Consensus pattern (2 bp): TA Left flanking sequence: Indices 185024 -- 185523 ATCCCAGAAACAATTTTATAACACAACAAAAAAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAATTCATATATATATAATATATAATATATATAATATATATATGTTATATTATT CATTTTGTGTATTACACAATATGAATATATGCACAAAATTAATAATCTTCATTAATATCGCATAA TAATTTGTAGGTTACTCCTTCTCTCAAGAAGATTTAAATATGGCCTTAAAAATTCACAATGCTGT CAATGAAGAAACATGGAATAAAATTATGAAAAAAGAACAAAAATATTTCGACATATGTAAAGAAC AAAAATTAATAAAGTTCGTAGGATATCCTACGAAACTATCTATTAAAGCTTTTATGTTAACACTC ATAGGTTATAACAAACCTTTTGATAGACATGAGTGGTACATAGACAGATGTGGAAATACAATCAA GTAAAAATAAAACATAAATAATTAATTAAAAGAAAATCACACAAT Right flanking sequence: Indices 185583 -- 186082 TTTATGATTACACTTTATTTTTACATTAGATATATTATTGATTACTATGATGGGAAAAAAGAAAA AAATTCTGCAGTCTCAATTTATATTGATGCCAGACCACAACTCAATCATCAAAATGCAATAGATA ATGTTAAAATTATTTATATAAAGATTTGTAGGTTTTTAAATAACCTTTTTTAAAAATGAAAAAAT ATAATAATAATAATAAAAGATATCATATACATATTTAGACATGTATATAATCCAAAATTATACAT ACTAATTAAAAAATAAAAAATAATATATAATATATTTCAAAACAAACCTTTCGGAATAATATAAA TTGTCATCATAAATTTAATAATATATTACATTATATTATATTTTTTTTTTTTTTTTATTAACCAT CGAAATATATAAACGGAACTGTTTTTTTTCATTTTTTTGTTTTTTTTTGTAAAAAATATTCATTC TAAAATATTTTCTTATAATGTATAAATTAATATTCAAAAATAAAA Found at i:185786 original size:3 final size:3 Alignment explanation
Indices: 185778--185793 Score: 32 Period size: 3 Copynumber: 5.3 Consensus size: 3 185768 ATGAAAAAAT 185778 ATA ATA ATA ATA ATA A 1 ATA ATA ATA ATA ATA A 185794 AAGATATCAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 13 1.00 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (3 bp): ATA Left flanking sequence: Indices 185278 -- 185777 TGCTGTCAATGAAGAAACATGGAATAAAATTATGAAAAAAGAACAAAAATATTTCGACATATGTA AAGAACAAAAATTAATAAAGTTCGTAGGATATCCTACGAAACTATCTATTAAAGCTTTTATGTTA ACACTCATAGGTTATAACAAACCTTTTGATAGACATGAGTGGTACATAGACAGATGTGGAAATAC AATCAAGTAAAAATAAAACATAAATAATTAATTAAAAGAAAATCACACAATTATATATATATATA TATATATATATATATATATATATATTTATACATACATATATATATTTTATGATTACACTTTATTT TTACATTAGATATATTATTGATTACTATGATGGGAAAAAAGAAAAAAATTCTGCAGTCTCAATTT ATATTGATGCCAGACCACAACTCAATCATCAAAATGCAATAGATAATGTTAAAATTATTTATATA AAGATTTGTAGGTTTTTAAATAACCTTTTTTAAAAATGAAAAAAT Right flanking sequence: Indices 185794 -- 186293 AAGATATCATATACATATTTAGACATGTATATAATCCAAAATTATACATACTAATTAAAAAATAA AAAATAATATATAATATATTTCAAAACAAACCTTTCGGAATAATATAAATTGTCATCATAAATTT AATAATATATTACATTATATTATATTTTTTTTTTTTTTTTATTAACCATCGAAATATATAAACGG AACTGTTTTTTTTCATTTTTTTGTTTTTTTTTGTAAAAAATATTCATTCTAAAATATTTTCTTAT AATGTATAAATTAATATTCAAAAATAAAAAAAAAATAAATAAAATAATTAAATTTCATTATTTCG TTCATATATTTTTAACAGATTTGTTAAATTTACATATATAACACTAATATATATAATATAAATGA ATAAATGAATAAATAAAAATAAATATATATATATATATATATATACATATATCAAAATAAGAAAA AAAAAAAAAAAAAAAAATAAAAAATAAAAAATAAAATAAAATAAG Found at i:185945 original size:5 final size:5 Alignment explanation
Indices: 185925--185949 Score: 36 Period size: 5 Copynumber: 5.0 Consensus size: 5 185915 CATAAATTTA * * 185925 ATAAT ATATT ACATT ATATT ATATT 1 ATATT ATATT ATATT ATATT ATATT 185950 TTTTTTTTTT Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 5 17 1.00 ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52 Consensus pattern (5 bp): ATATT Left flanking sequence: Indices 185425 -- 185924 CAAACCTTTTGATAGACATGAGTGGTACATAGACAGATGTGGAAATACAATCAAGTAAAAATAAA ACATAAATAATTAATTAAAAGAAAATCACACAATTATATATATATATATATATATATATATATAT ATATATATTTATACATACATATATATATTTTATGATTACACTTTATTTTTACATTAGATATATTA TTGATTACTATGATGGGAAAAAAGAAAAAAATTCTGCAGTCTCAATTTATATTGATGCCAGACCA CAACTCAATCATCAAAATGCAATAGATAATGTTAAAATTATTTATATAAAGATTTGTAGGTTTTT AAATAACCTTTTTTAAAAATGAAAAAATATAATAATAATAATAAAAGATATCATATACATATTTA GACATGTATATAATCCAAAATTATACATACTAATTAAAAAATAAAAAATAATATATAATATATTT CAAAACAAACCTTTCGGAATAATATAAATTGTCATCATAAATTTA Right flanking sequence: Indices 185950 -- 186449 TTTTTTTTTTTTTTATTAACCATCGAAATATATAAACGGAACTGTTTTTTTTCATTTTTTTGTTT TTTTTTGTAAAAAATATTCATTCTAAAATATTTTCTTATAATGTATAAATTAATATTCAAAAATA AAAAAAAAATAAATAAAATAATTAAATTTCATTATTTCGTTCATATATTTTTAACAGATTTGTTA AATTTACATATATAACACTAATATATATAATATAAATGAATAAATGAATAAATAAAAATAAATAT ATATATATATATATATATACATATATCAAAATAAGAAAAAAAAAAAAAAAAAAAAATAAAAAATA AAAAATAAAATAAAATAAGATAAGATAATTTATTCAAATATATAAAGGAAGAATTAACAAAAATA TACTAATATCATGTAATATAAATTATAAAAATAAAATATATATGCCTCAAAAATATATATGAATA TATATACATTTATATAGGTATGTATATATAATTAATTTGCGCCAA Found at i:185954 original size:1 final size:1 Alignment explanation
Indices: 185948--185963 Score: 32 Period size: 1 Copynumber: 16.0 Consensus size: 1 185938 TTATATTATA 185948 TTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTT 185964 ATTAACCATC Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 15 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 185448 -- 185947 GGTACATAGACAGATGTGGAAATACAATCAAGTAAAAATAAAACATAAATAATTAATTAAAAGAA AATCACACAATTATATATATATATATATATATATATATATATATATATATTTATACATACATATA TATATTTTATGATTACACTTTATTTTTACATTAGATATATTATTGATTACTATGATGGGAAAAAA GAAAAAAATTCTGCAGTCTCAATTTATATTGATGCCAGACCACAACTCAATCATCAAAATGCAAT AGATAATGTTAAAATTATTTATATAAAGATTTGTAGGTTTTTAAATAACCTTTTTTAAAAATGAA AAAATATAATAATAATAATAAAAGATATCATATACATATTTAGACATGTATATAATCCAAAATTA TACATACTAATTAAAAAATAAAAAATAATATATAATATATTTCAAAACAAACCTTTCGGAATAAT ATAAATTGTCATCATAAATTTAATAATATATTACATTATATTATA Right flanking sequence: Indices 185964 -- 186463 ATTAACCATCGAAATATATAAACGGAACTGTTTTTTTTCATTTTTTTGTTTTTTTTTGTAAAAAA TATTCATTCTAAAATATTTTCTTATAATGTATAAATTAATATTCAAAAATAAAAAAAAAATAAAT AAAATAATTAAATTTCATTATTTCGTTCATATATTTTTAACAGATTTGTTAAATTTACATATATA ACACTAATATATATAATATAAATGAATAAATGAATAAATAAAAATAAATATATATATATATATAT ATATACATATATCAAAATAAGAAAAAAAAAAAAAAAAAAAAATAAAAAATAAAAAATAAAATAAA ATAAGATAAGATAATTTATTCAAATATATAAAGGAAGAATTAACAAAAATATACTAATATCATGT AATATAAATTATAAAAATAAAATATATATGCCTCAAAAATATATATGAATATATATACATTTATA TAGGTATGTATATATAATTAATTTGCGCCAAGTATATTCTTGTCT Found at i:186000 original size:1 final size:1 Alignment explanation
Indices: 185994--186020 Score: 33 Period size: 1 Copynumber: 27.0 Consensus size: 1 185984 AACGGAACTG ** * 185994 TTTTTTTTCATTTTTTTGTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTT 186021 GTAAAAAATA Statistics Matches: 21, Mismatches: 5, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 1 21 1.00 ACGTcount: A:0.04, C:0.04, G:0.04, T:0.89 Consensus pattern (1 bp): T Left flanking sequence: Indices 185494 -- 185993 AAATAATTAATTAAAAGAAAATCACACAATTATATATATATATATATATATATATATATATATAT ATATTTATACATACATATATATATTTTATGATTACACTTTATTTTTACATTAGATATATTATTGA TTACTATGATGGGAAAAAAGAAAAAAATTCTGCAGTCTCAATTTATATTGATGCCAGACCACAAC TCAATCATCAAAATGCAATAGATAATGTTAAAATTATTTATATAAAGATTTGTAGGTTTTTAAAT AACCTTTTTTAAAAATGAAAAAATATAATAATAATAATAAAAGATATCATATACATATTTAGACA TGTATATAATCCAAAATTATACATACTAATTAAAAAATAAAAAATAATATATAATATATTTCAAA ACAAACCTTTCGGAATAATATAAATTGTCATCATAAATTTAATAATATATTACATTATATTATAT TTTTTTTTTTTTTTTATTAACCATCGAAATATATAAACGGAACTG Right flanking sequence: Indices 186021 -- 186520 GTAAAAAATATTCATTCTAAAATATTTTCTTATAATGTATAAATTAATATTCAAAAATAAAAAAA AAATAAATAAAATAATTAAATTTCATTATTTCGTTCATATATTTTTAACAGATTTGTTAAATTTA CATATATAACACTAATATATATAATATAAATGAATAAATGAATAAATAAAAATAAATATATATAT ATATATATATATACATATATCAAAATAAGAAAAAAAAAAAAAAAAAAAAATAAAAAATAAAAAAT AAAATAAAATAAGATAAGATAATTTATTCAAATATATAAAGGAAGAATTAACAAAAATATACTAA TATCATGTAATATAAATTATAAAAATAAAATATATATGCCTCAAAAATATATATGAATATATATA CATTTATATAGGTATGTATATATAATTAATTTGCGCCAAGTATATTCTTGTCTTCTACTGAAATT TATAGAAACTATACATATTGCTAAAATATACACAAATAAATAGAG Found at