TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 102845780 P. falciparum 3D7 GENOMIC chr6 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1418244 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Found at i: i:677376 original size:6 final size:6 Alignment explanation
Indices: 677365--677378 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 677355 CATTTTGATT 677365 ATTTTG ATTTTG AT 1 ATTTTG ATTTTG AT 677379 CATTTGAAGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64 Consensus pattern (6 bp): ATTTTG Left flanking sequence: Indices 676865 -- 677364 ATTATATTATCGTGAAAATATCATATTTGTATATTCTCCGATACAATTTTATTAATTTGATTTAT GGTTTCTTGTATATGATCATTATTAGACTTTATAATATTTTCTATATTTAAAATTTTATGCTCTA AATTATTTATTTCGTCTTTTTCTATTTTTTGTTTTTCTTGTACCTTTTTAACTTCATCTAACTTT TTTATTTCGATACTTAGTTTTTCATATATCTCTTTTCGCTTACGTTTTTCTTTTATATCTTGTAA TAAATCTTTATATATAATATTTTTGTTTTTAACTTGTTTGAATTTCTTAATTTTTTTTCTTGTTT CTTTATTTAAAAATCTGAAATCTTTTTTTATTGAAGACAATTCATTTAATAATAAATTTATGTTA TGACCAATTCTGGAAAAGTAAAGATATCCATTTAAAAATGCTTCATTTTCTTTTAATAGATGTTG ATTATTTAAGATATCTGACTGTTGATCATTTTGATCATTTTGATT Right flanking sequence: Indices 677379 -- 677878 CATTTGAAGTTTCAATAACTTTGGTATCACTTGTATTTACATCTTTTTTATTATCTACATTATTT TTATCATATTTGGATATATTTATATCTTTTAAAAATAATTTTATTGATTTGTTTATGCAAAGCGT AAAGTCCATTTTGGGTTCGAATACGCTCTGTGAACAGAGTCCTGCATAGGCATCTTCCATATTAT ACAAATAAATAAATAAATAAAAATATATATATATATATATATATATTTATAATTTGAGATATAAT TATATAAAATATAAGAATATATGATTATATAATTATAATAACTTTTATGAGGAACTTTTTAATTA CGAAAAGGGGGATTAAGAAAATATATTTCCATAATGTATATTATTTTATAATTTTATTTCTTCAT AAAATATATTAATGACAAAAAGTTAAATTAATAAAAAATGTAACATATGTAAATATATAAATATA TATATATATATATATATATATATTATATTTAAAATTTTAGGGACG Found at i:677617 original size:4 final size:4 Alignment explanation
Indices: 677567--677624 Score: 53 Period size: 4 Copynumber: 14.8 Consensus size: 4 677557 GGCATCTTCC * * * * * * * 677567 ATAT -TAT ACAA ATAA ATAA ATAA ATAA AAAT ATAT ATAT ATAT ATAT 1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT * 677614 ATAT ATTT ATA 1 ATAT ATAT ATA 677625 ATTTGAGATA Statistics Matches: 45, Mismatches: 8, Indels: 2 0.82 0.15 0.04 Matches are distributed among these distances: 3 3 0.07 4 42 0.93 ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40 Consensus pattern (4 bp): ATAT Left flanking sequence: Indices 677067 -- 677566 CGATACTTAGTTTTTCATATATCTCTTTTCGCTTACGTTTTTCTTTTATATCTTGTAATAAATCT TTATATATAATATTTTTGTTTTTAACTTGTTTGAATTTCTTAATTTTTTTTCTTGTTTCTTTATT TAAAAATCTGAAATCTTTTTTTATTGAAGACAATTCATTTAATAATAAATTTATGTTATGACCAA TTCTGGAAAAGTAAAGATATCCATTTAAAAATGCTTCATTTTCTTTTAATAGATGTTGATTATTT AAGATATCTGACTGTTGATCATTTTGATCATTTTGATTATTTTGATTTTGATCATTTGAAGTTTC AATAACTTTGGTATCACTTGTATTTACATCTTTTTTATTATCTACATTATTTTTATCATATTTGG ATATATTTATATCTTTTAAAAATAATTTTATTGATTTGTTTATGCAAAGCGTAAAGTCCATTTTG GGTTCGAATACGCTCTGTGAACAGAGTCCTGCATAGGCATCTTCC Right flanking sequence: Indices 677625 -- 678124 ATTTGAGATATAATTATATAAAATATAAGAATATATGATTATATAATTATAATAACTTTTATGAG GAACTTTTTAATTACGAAAAGGGGGATTAAGAAAATATATTTCCATAATGTATATTATTTTATAA TTTTATTTCTTCATAAAATATATTAATGACAAAAAGTTAAATTAATAAAAAATGTAACATATGTA AATATATAAATATATATATATATATATATATATATATTATATTTAAAATTTTAGGGACGCTTATT TAAATAAAACCTAATGCAATATAATATTGTATGTATATATTTTATTATATAATATTTATATTTAA TTTTTTCATTTAGCACGTATGAGGAAGTATACATATATATATAATATAATGTACGTATAATAATA TGAGAAAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTATTTTATTTTATTTTATT TTATTTTTTTTATTATTATTATTTAATTTTTTAATTTTTTGTAGC Found at i:677834 original size:2 final size:2 Alignment explanation
Indices: 677813--677861 Score: 70 Period size: 2 Copynumber: 25.0 Consensus size: 2 677803 AAAATGTAAC * * * 677813 AT AT GT AA AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 677855 AT -T AT AT 1 AT AT AT AT 677862 TTAAAATTTT Statistics Matches: 40, Mismatches: 6, Indels: 2 0.83 0.12 0.04 Matches are distributed among these distances: 1 1 0.03 2 39 0.97 ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47 Consensus pattern (2 bp): AT Left flanking sequence: Indices 677313 -- 677812 GATGTTGATTATTTAAGATATCTGACTGTTGATCATTTTGATCATTTTGATTATTTTGATTTTGA TCATTTGAAGTTTCAATAACTTTGGTATCACTTGTATTTACATCTTTTTTATTATCTACATTATT TTTATCATATTTGGATATATTTATATCTTTTAAAAATAATTTTATTGATTTGTTTATGCAAAGCG TAAAGTCCATTTTGGGTTCGAATACGCTCTGTGAACAGAGTCCTGCATAGGCATCTTCCATATTA TACAAATAAATAAATAAATAAAAATATATATATATATATATATATATTTATAATTTGAGATATAA TTATATAAAATATAAGAATATATGATTATATAATTATAATAACTTTTATGAGGAACTTTTTAATT ACGAAAAGGGGGATTAAGAAAATATATTTCCATAATGTATATTATTTTATAATTTTATTTCTTCA TAAAATATATTAATGACAAAAAGTTAAATTAATAAAAAATGTAAC Right flanking sequence: Indices 677862 -- 678361 TTAAAATTTTAGGGACGCTTATTTAAATAAAACCTAATGCAATATAATATTGTATGTATATATTT TATTATATAATATTTATATTTAATTTTTTCATTTAGCACGTATGAGGAAGTATACATATATATAT AATATAATGTACGTATAATAATATGAGAAAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TATTTATTTTATTTTATTTTATTTTATTTTTTTTATTATTATTATTTAATTTTTTAATTTTTTGT AGCAAAATATTATATATATTTTAATTTGATAATTATTCATGTTAAAAATATTTCAGTCCTCAAGC GTGAGATGAACAAAAAAATATATTTTTAAGAATGTAAAAGGTATATTTATTTATTTATTTATATA TATATATATATATATATGTATATATTTATGTCATGTATAAAAAAATGGGAAGGAGTAGAAAAAAG TTTATGAAAAAAATACTGTACACAATATGACGAAAGTCAAGGTAT Found at i:677930 original size:5 final size:5 Alignment explanation
Indices: 677922--677953 Score: 27 Period size: 5 Copynumber: 6.2 Consensus size: 5 677912 TGTATGTATA * ** * 677922 TATTT TATTA TATAA TATTT ATATTT AATTT T 1 TATTT TATTT TATTT TATTT -TATTT TATTT T 677954 TTCATTTAGC Statistics Matches: 20, Mismatches: 6, Indels: 2 0.71 0.21 0.07 Matches are distributed among these distances: 5 15 0.75 6 5 0.25 ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66 Consensus pattern (5 bp): TATTT Left flanking sequence: Indices 677422 -- 677921 TTTTTTATTATCTACATTATTTTTATCATATTTGGATATATTTATATCTTTTAAAAATAATTTTA TTGATTTGTTTATGCAAAGCGTAAAGTCCATTTTGGGTTCGAATACGCTCTGTGAACAGAGTCCT GCATAGGCATCTTCCATATTATACAAATAAATAAATAAATAAAAATATATATATATATATATATA TATTTATAATTTGAGATATAATTATATAAAATATAAGAATATATGATTATATAATTATAATAACT TTTATGAGGAACTTTTTAATTACGAAAAGGGGGATTAAGAAAATATATTTCCATAATGTATATTA TTTTATAATTTTATTTCTTCATAAAATATATTAATGACAAAAAGTTAAATTAATAAAAAATGTAA CATATGTAAATATATAAATATATATATATATATATATATATATATTATATTTAAAATTTTAGGGA CGCTTATTTAAATAAAACCTAATGCAATATAATATTGTATGTATA Right flanking sequence: Indices 677954 -- 678453 TTCATTTAGCACGTATGAGGAAGTATACATATATATATAATATAATGTACGTATAATAATATGAG AAAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTATTTTATTTTATTTTATTTTAT TTTTTTTATTATTATTATTTAATTTTTTAATTTTTTGTAGCAAAATATTATATATATTTTAATTT GATAATTATTCATGTTAAAAATATTTCAGTCCTCAAGCGTGAGATGAACAAAAAAATATATTTTT AAGAATGTAAAAGGTATATTTATTTATTTATTTATATATATATATATATATATATGTATATATTT ATGTCATGTATAAAAAAATGGGAAGGAGTAGAAAAAAGTTTATGAAAAAAATACTGTACACAATA TGACGAAAGTCAAGGTATATATTTCTATTTATACGTAGATATGCCTTTTTATCTTTCCTTTTTTT TATTACTTGTTTATAACATTGTAATAAAAGTATATGGTTGTATTC Found at i:677989 original size:2 final size:2 Alignment explanation
Indices: 677977--677997 Score: 28 Period size: 2 Copynumber: 11.0 Consensus size: 2 677967 TATGAGGAAG * 677977 TA TA CA TA TA TA TA TA -A TA TA 1 TA TA TA TA TA TA TA TA TA TA TA 677998 ATGTACGTAT Statistics Matches: 16, Mismatches: 2, Indels: 2 0.80 0.10 0.10 Matches are distributed among these distances: 1 1 0.06 2 15 0.94 ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43 Consensus pattern (2 bp): TA Left flanking sequence: Indices 677477 -- 677976 AATAATTTTATTGATTTGTTTATGCAAAGCGTAAAGTCCATTTTGGGTTCGAATACGCTCTGTGA ACAGAGTCCTGCATAGGCATCTTCCATATTATACAAATAAATAAATAAATAAAAATATATATATA TATATATATATATTTATAATTTGAGATATAATTATATAAAATATAAGAATATATGATTATATAAT TATAATAACTTTTATGAGGAACTTTTTAATTACGAAAAGGGGGATTAAGAAAATATATTTCCATA ATGTATATTATTTTATAATTTTATTTCTTCATAAAATATATTAATGACAAAAAGTTAAATTAATA AAAAATGTAACATATGTAAATATATAAATATATATATATATATATATATATATATTATATTTAAA ATTTTAGGGACGCTTATTTAAATAAAACCTAATGCAATATAATATTGTATGTATATATTTTATTA TATAATATTTATATTTAATTTTTTCATTTAGCACGTATGAGGAAG Right flanking sequence: Indices 677998 -- 678497 ATGTACGTATAATAATATGAGAAAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTA TTTTATTTTATTTTATTTTATTTTTTTTATTATTATTATTTAATTTTTTAATTTTTTGTAGCAAA ATATTATATATATTTTAATTTGATAATTATTCATGTTAAAAATATTTCAGTCCTCAAGCGTGAGA TGAACAAAAAAATATATTTTTAAGAATGTAAAAGGTATATTTATTTATTTATTTATATATATATA TATATATATATGTATATATTTATGTCATGTATAAAAAAATGGGAAGGAGTAGAAAAAAGTTTATG AAAAAAATACTGTACACAATATGACGAAAGTCAAGGTATATATTTCTATTTATACGTAGATATGC CTTTTTATCTTTCCTTTTTTTTATTACTTGTTTATAACATTGTAATAAAAGTATATGGTTGTATT CAAAATTTTGGAGTTACTAAAAAAAATGAATTATTATATATAAAC Found at i:677991 original size:6 final size:5 Alignment explanation
Indices: 677977--678011 Score: 29 Period size: 6 Copynumber: 6.4 Consensus size: 5 677967 TATGAGGAAG * * 677977 TATACA TATATA TATAA TATAA TGTACG TATAA TA 1 TATA-A TATA-A TATAA TATAA TATA-A TATAA TA 678012 ATATGAGAAA Statistics Matches: 23, Mismatches: 5, Indels: 3 0.74 0.16 0.10 Matches are distributed among these distances: 5 11 0.48 6 12 0.52 ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40 Consensus pattern (5 bp): TATAA Left flanking sequence: Indices 677477 -- 677976 AATAATTTTATTGATTTGTTTATGCAAAGCGTAAAGTCCATTTTGGGTTCGAATACGCTCTGTGA ACAGAGTCCTGCATAGGCATCTTCCATATTATACAAATAAATAAATAAATAAAAATATATATATA TATATATATATATTTATAATTTGAGATATAATTATATAAAATATAAGAATATATGATTATATAAT TATAATAACTTTTATGAGGAACTTTTTAATTACGAAAAGGGGGATTAAGAAAATATATTTCCATA ATGTATATTATTTTATAATTTTATTTCTTCATAAAATATATTAATGACAAAAAGTTAAATTAATA AAAAATGTAACATATGTAAATATATAAATATATATATATATATATATATATATATTATATTTAAA ATTTTAGGGACGCTTATTTAAATAAAACCTAATGCAATATAATATTGTATGTATATATTTTATTA TATAATATTTATATTTAATTTTTTCATTTAGCACGTATGAGGAAG Right flanking sequence: Indices 678012 -- 678511 ATATGAGAAAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTATTTTATTTTATTTT ATTTTATTTTTTTTATTATTATTATTTAATTTTTTAATTTTTTGTAGCAAAATATTATATATATT TTAATTTGATAATTATTCATGTTAAAAATATTTCAGTCCTCAAGCGTGAGATGAACAAAAAAATA TATTTTTAAGAATGTAAAAGGTATATTTATTTATTTATTTATATATATATATATATATATATGTA TATATTTATGTCATGTATAAAAAAATGGGAAGGAGTAGAAAAAAGTTTATGAAAAAAATACTGTA CACAATATGACGAAAGTCAAGGTATATATTTCTATTTATACGTAGATATGCCTTTTTATCTTTCC TTTTTTTTATTACTTGTTTATAACATTGTAATAAAAGTATATGGTTGTATTCAAAATTTTGGAGT TACTAAAAAAAATGAATTATTATATATAAACAATAAATTTTTATT Found at i:678032 original size:1 final size:1 Alignment explanation
Indices: 678026--678119 Score: 90 Period size: 1 Copynumber: 94.0 Consensus size: 1 678016 GAGAAAGTAA * * * * * * 678026 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTATTTTATTTTATTTTATTTTATTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT * * * * ** ** 678091 ATTATTATTATTTAATTTTTTAATTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT 678120 GTAGCAAAAT Statistics Matches: 69, Mismatches: 24, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 1 69 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (1 bp): T Left flanking sequence: Indices 677526 -- 678025 CGAATACGCTCTGTGAACAGAGTCCTGCATAGGCATCTTCCATATTATACAAATAAATAAATAAA TAAAAATATATATATATATATATATATATTTATAATTTGAGATATAATTATATAAAATATAAGAA TATATGATTATATAATTATAATAACTTTTATGAGGAACTTTTTAATTACGAAAAGGGGGATTAAG AAAATATATTTCCATAATGTATATTATTTTATAATTTTATTTCTTCATAAAATATATTAATGACA AAAAGTTAAATTAATAAAAAATGTAACATATGTAAATATATAAATATATATATATATATATATAT ATATATTATATTTAAAATTTTAGGGACGCTTATTTAAATAAAACCTAATGCAATATAATATTGTA TGTATATATTTTATTATATAATATTTATATTTAATTTTTTCATTTAGCACGTATGAGGAAGTATA CATATATATATAATATAATGTACGTATAATAATATGAGAAAGTAA Right flanking sequence: Indices 678120 -- 678619 GTAGCAAAATATTATATATATTTTAATTTGATAATTATTCATGTTAAAAATATTTCAGTCCTCAA GCGTGAGATGAACAAAAAAATATATTTTTAAGAATGTAAAAGGTATATTTATTTATTTATTTATA TATATATATATATATATATGTATATATTTATGTCATGTATAAAAAAATGGGAAGGAGTAGAAAAA AGTTTATGAAAAAAATACTGTACACAATATGACGAAAGTCAAGGTATATATTTCTATTTATACGT AGATATGCCTTTTTATCTTTCCTTTTTTTTATTACTTGTTTATAACATTGTAATAAAAGTATATG GTTGTATTCAAAATTTTGGAGTTACTAAAAAAAATGAATTATTATATATAAACAATAAATTTTTA TTATGTAACAAATGGTTTAAAAAAAATAAAAATAAATATAAATATAATATTAATAAATATGTTAA TTCTAATCTTTATACATCATGTTCCATAAGAAATAAGAATGTAGT Found at i:678239 original size:4 final size:4 Alignment explanation
Indices: 678228--678280 Score: 64 Period size: 4 Copynumber: 13.2 Consensus size: 4 678218 ATGTAAAAGG * * * * * 678228 TATA TTTA TTTA TTTA TTTA TATA TATA TATA TATA TATA TGTA TATA 1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA * 678276 TTTA T 1 TATA T 678281 GTCATGTATA Statistics Matches: 44, Mismatches: 5, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 4 44 1.00 ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60 Consensus pattern (4 bp): TATA Left flanking sequence: Indices 677728 -- 678227 ATTTCCATAATGTATATTATTTTATAATTTTATTTCTTCATAAAATATATTAATGACAAAAAGTT AAATTAATAAAAAATGTAACATATGTAAATATATAAATATATATATATATATATATATATATATT ATATTTAAAATTTTAGGGACGCTTATTTAAATAAAACCTAATGCAATATAATATTGTATGTATAT ATTTTATTATATAATATTTATATTTAATTTTTTCATTTAGCACGTATGAGGAAGTATACATATAT ATATAATATAATGTACGTATAATAATATGAGAAAGTAATTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTATTTATTTTATTTTATTTTATTTTATTTTTTTTATTATTATTATTTAATTTTTTAATTTT TTGTAGCAAAATATTATATATATTTTAATTTGATAATTATTCATGTTAAAAATATTTCAGTCCTC AAGCGTGAGATGAACAAAAAAATATATTTTTAAGAATGTAAAAGG Right flanking sequence: Indices 678281 -- 678780 GTCATGTATAAAAAAATGGGAAGGAGTAGAAAAAAGTTTATGAAAAAAATACTGTACACAATATG ACGAAAGTCAAGGTATATATTTCTATTTATACGTAGATATGCCTTTTTATCTTTCCTTTTTTTTA TTACTTGTTTATAACATTGTAATAAAAGTATATGGTTGTATTCAAAATTTTGGAGTTACTAAAAA AAATGAATTATTATATATAAACAATAAATTTTTATTATGTAACAAATGGTTTAAAAAAAATAAAA ATAAATATAAATATAATATTAATAAATATGTTAATTCTAATCTTTATACATCATGTTCCATAAGA AATAAGAATGTAGTTTATTTTAATAAAGATAAAACAACAATATTTGTAAGTTTATTAAATTCGCC TATTGTAGGTATTAAAATAAATGATGATAAATGTAATGAGGATGTTATAGTACAGAATCTCAAAG ATAAGGAAGAAAAAAAAAATGTAAAAGATGATTTAAAGAATGTAA Found at i:678542 original size:6 final size:6 Alignment explanation
Indices: 678531--678568 Score: 39 Period size: 6 Copynumber: 6.2 Consensus size: 6 678521 ATGGTTTAAA * * * * 678531 AAAAAT AAAAAT AAATAT AAATAT AATATT AATAAAT A 1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA-AAAT A 678569 TGTTAATTCT Statistics Matches: 25, Mismatches: 6, Indels: 1 0.78 0.19 0.03 Matches are distributed among these distances: 6 22 0.88 7 3 0.12 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (6 bp): AAAAAT Left flanking sequence: Indices 678031 -- 678530 TTTTTTTTTTTTTTTTTTTTTTTTTTTATTTATTTTATTTTATTTTATTTTATTTTTTTTATTAT TATTATTTAATTTTTTAATTTTTTGTAGCAAAATATTATATATATTTTAATTTGATAATTATTCA TGTTAAAAATATTTCAGTCCTCAAGCGTGAGATGAACAAAAAAATATATTTTTAAGAATGTAAAA GGTATATTTATTTATTTATTTATATATATATATATATATATATGTATATATTTATGTCATGTATA AAAAAATGGGAAGGAGTAGAAAAAAGTTTATGAAAAAAATACTGTACACAATATGACGAAAGTCA AGGTATATATTTCTATTTATACGTAGATATGCCTTTTTATCTTTCCTTTTTTTTATTACTTGTTT ATAACATTGTAATAAAAGTATATGGTTGTATTCAAAATTTTGGAGTTACTAAAAAAAATGAATTA TTATATATAAACAATAAATTTTTATTATGTAACAAATGGTTTAAA Right flanking sequence: Indices 678569 -- 679068 TGTTAATTCTAATCTTTATACATCATGTTCCATAAGAAATAAGAATGTAGTTTATTTTAATAAAG ATAAAACAACAATATTTGTAAGTTTATTAAATTCGCCTATTGTAGGTATTAAAATAAATGATGAT AAATGTAATGAGGATGTTATAGTACAGAATCTCAAAGATAAGGAAGAAAAAAAAAATGTAAAAGA TGATTTAAAGAATGTAAGTAACCATCATATAAATAATAATATATATAGTATAAATAATCTTCCTT ATCTTTACAATAATTATAATTTAATTAATCTACATCATAATGAAGAACCCTTTGGCTTTTCCCCA CAATTTAATAATTATTCAATGTTAAAAGAAAAAAAAAATATATATTTTTATAAACATAAAAATAA ATTAAATGATTGGTTATGTACACATTATTTTCCACAAAATATATCGTGTAGGTATATAAAAAATG TACTATTTAATTTTAGACTTTACGATTTTAATATTAAGGAAAATA Found at i:678849 original size:6 final size:6 Alignment explanation
Indices: 678838--678855 Score: 29 Period size: 6 Copynumber: 3.2 Consensus size: 6 678828 TATCTTTACA 678838 ATAATT ATAATT -TAATT A 1 ATAATT ATAATT ATAATT A 678856 ATCTACATCA Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 5 5 0.45 6 6 0.55 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (6 bp): ATAATT Left flanking sequence: Indices 678338 -- 678837 ACAATATGACGAAAGTCAAGGTATATATTTCTATTTATACGTAGATATGCCTTTTTATCTTTCCT TTTTTTTATTACTTGTTTATAACATTGTAATAAAAGTATATGGTTGTATTCAAAATTTTGGAGTT ACTAAAAAAAATGAATTATTATATATAAACAATAAATTTTTATTATGTAACAAATGGTTTAAAAA AAATAAAAATAAATATAAATATAATATTAATAAATATGTTAATTCTAATCTTTATACATCATGTT CCATAAGAAATAAGAATGTAGTTTATTTTAATAAAGATAAAACAACAATATTTGTAAGTTTATTA AATTCGCCTATTGTAGGTATTAAAATAAATGATGATAAATGTAATGAGGATGTTATAGTACAGAA TCTCAAAGATAAGGAAGAAAAAAAAAATGTAAAAGATGATTTAAAGAATGTAAGTAACCATCATA TAAATAATAATATATATAGTATAAATAATCTTCCTTATCTTTACA Right flanking sequence: Indices 678856 -- 679355 ATCTACATCATAATGAAGAACCCTTTGGCTTTTCCCCACAATTTAATAATTATTCAATGTTAAAA GAAAAAAAAAATATATATTTTTATAAACATAAAAATAAATTAAATGATTGGTTATGTACACATTA TTTTCCACAAAATATATCGTGTAGGTATATAAAAAATGTACTATTTAATTTTAGACTTTACGATT TTAATATTAAGGAAAATATATTATATCATTTGTGTTTAAAATATATTTATTATAATAAGAATGAT TATATGTCGCTTGAGAAAAAAATAAAGTTATTAAATATTGTTGATCAAAATAAATATAAGTTTAT ATTAGACCATGCAAGGGTATTACATAAGGTGATAAAAAAAGAAAAATATAAAATGATGAAACATA TATATAATGAAAAAAATAAAGAAAGAAATGTACATAATAAAATTAATGATGAGACACATACAATA CCTATTTATAATATACAACATAATAATAAAAATTCATATGATGAT Found at i:678958 original size:6 final size:6 Alignment explanation
Indices: 678943--678959 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 678933 ATATATTTTT * 678943 ATAAAC ATAAAA ATAAA 1 ATAAAA ATAAAA ATAAA 678960 TTAAATGATT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18 Consensus pattern (6 bp): ATAAAA Left flanking sequence: Indices 678443 -- 678942 TGGTTGTATTCAAAATTTTGGAGTTACTAAAAAAAATGAATTATTATATATAAACAATAAATTTT TATTATGTAACAAATGGTTTAAAAAAAATAAAAATAAATATAAATATAATATTAATAAATATGTT AATTCTAATCTTTATACATCATGTTCCATAAGAAATAAGAATGTAGTTTATTTTAATAAAGATAA AACAACAATATTTGTAAGTTTATTAAATTCGCCTATTGTAGGTATTAAAATAAATGATGATAAAT GTAATGAGGATGTTATAGTACAGAATCTCAAAGATAAGGAAGAAAAAAAAAATGTAAAAGATGAT TTAAAGAATGTAAGTAACCATCATATAAATAATAATATATATAGTATAAATAATCTTCCTTATCT TTACAATAATTATAATTTAATTAATCTACATCATAATGAAGAACCCTTTGGCTTTTCCCCACAAT TTAATAATTATTCAATGTTAAAAGAAAAAAAAAATATATATTTTT Right flanking sequence: Indices 678960 -- 679459 TTAAATGATTGGTTATGTACACATTATTTTCCACAAAATATATCGTGTAGGTATATAAAAAATGT ACTATTTAATTTTAGACTTTACGATTTTAATATTAAGGAAAATATATTATATCATTTGTGTTTAA AATATATTTATTATAATAAGAATGATTATATGTCGCTTGAGAAAAAAATAAAGTTATTAAATATT GTTGATCAAAATAAATATAAGTTTATATTAGACCATGCAAGGGTATTACATAAGGTGATAAAAAA AGAAAAATATAAAATGATGAAACATATATATAATGAAAAAAATAAAGAAAGAAATGTACATAATA AAATTAATGATGAGACACATACAATACCTATTTATAATATACAACATAATAATAAAAATTCATAT GATGATATTAATTATAATAACAAAATTATTGATACGTATTTAAAAATGAGAAAAAAATTAAATAT TCTTTTTGTAACTTTAAAAATAGAAAAGAAACAAAATGTATATAA Found at i:679270 original size:4 final size:4 Alignment explanation
Indices: 679254--679273 Score: 26 Period size: 4 Copynumber: 5.0 Consensus size: 4 679244 TATATATAAT * * 679254 GAAA AAAA TAAA GAAA GAAA 1 GAAA GAAA GAAA GAAA GAAA 679274 TGTACATAAT Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 4 13 1.00 ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05 Consensus pattern (4 bp): GAAA Left flanking sequence: Indices 678754 -- 679253 ATGTAAAAGATGATTTAAAGAATGTAAGTAACCATCATATAAATAATAATATATATAGTATAAAT AATCTTCCTTATCTTTACAATAATTATAATTTAATTAATCTACATCATAATGAAGAACCCTTTGG CTTTTCCCCACAATTTAATAATTATTCAATGTTAAAAGAAAAAAAAAATATATATTTTTATAAAC ATAAAAATAAATTAAATGATTGGTTATGTACACATTATTTTCCACAAAATATATCGTGTAGGTAT ATAAAAAATGTACTATTTAATTTTAGACTTTACGATTTTAATATTAAGGAAAATATATTATATCA TTTGTGTTTAAAATATATTTATTATAATAAGAATGATTATATGTCGCTTGAGAAAAAAATAAAGT TATTAAATATTGTTGATCAAAATAAATATAAGTTTATATTAGACCATGCAAGGGTATTACATAAG GTGATAAAAAAAGAAAAATATAAAATGATGAAACATATATATAAT Right flanking sequence: Indices 679274 -- 679773 TGTACATAATAAAATTAATGATGAGACACATACAATACCTATTTATAATATACAACATAATAATA AAAATTCATATGATGATATTAATTATAATAACAAAATTATTGATACGTATTTAAAAATGAGAAAA AAATTAAATATTCTTTTTGTAACTTTAAAAATAGAAAAGAAACAAAATGTATATAAAATATATAA AAAAATAAAAAGAAATATAACATTTTATGATTTTTATGATCGATTACTTATTTTAAATTATTTTC ATATATCTCATAAACATCGTTTAGTATTAATGTTTTTTAAAAAATATATATACAAGTTATTAAAT AAACAAAATATGTTTATAATAAATTTTATAAATTCTTTCTTTTTTCAAAATAATATTTTATCAAA ATATATTATATATCCAAAAAGTACATATAATGATTCTTTATATAGTGATGTACAAACTTATGAGA ATACATATGAACATATAAAAGATAAATACAAATTATATCATGTAC Found at i:681407 original size:3 final size:3 Alignment explanation
Indices: 681388--681411 Score: 27 Period size: 3 Copynumber: 8.3 Consensus size: 3 681378 ATGGATATAT ** 681388 ATA ATA AAT ATA A-A ATA ATA ATA A 1 ATA ATA ATA ATA ATA ATA ATA ATA A 681412 ATTCATATGA Statistics Matches: 16, Mismatches: 4, Indels: 2 0.73 0.18 0.09 Matches are distributed among these distances: 2 2 0.12 3 14 0.88 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (3 bp): ATA Left flanking sequence: Indices 680888 -- 681387 TACCTATTTAGATTCTAATAATTTTTTATTATCATTTCTTATTAAAGGATATAAAAATATTTTAA AAAGTTGCTTGCTAGAAACAAATTCAATAAGTAAGAGCATGATGTTTTATAATTACAACTTTGAA GAATTATATTATTTTATGGAAACATATTTAGATGATTATATAAATAAATATTATTTAATATGTAA TGATAAAAATAAAGAAGATGAAATAATTTTAAATATAAAACCTATTTTATATTTGTTTCAAATAA ACATTCTCTTTTTTTTTAAATTATTACATGTATTAGACATATGTAATTATAAAAATATTGCCTTG TCTATTATTAATGAGTGTAAAAAAAAAAAATGGTTTAAAATTATTAATAGAAAGGTTATAAAATT ATTAATAAATAAATTTAAACGTACAAATAATAAAAATTATAAAAAGAATTTGTATATATACTCCT TAAGATTTATTGAAAATAAGGCAATATCTGAATATATGGATATAT Right flanking sequence: Indices 681412 -- 681911 ATTCATATGATAAAAAATGTATTAAAAAAAATTTCTATTCGTTCATTGAAAAAGATATCAAAATA AATGAAAAAAAAAAAAATTATAAAAAAATAATAAAAAATAACAATATTAATAATTATAATAATAA TTATAATAATAATTATAATAATAATTATAATAATAATTATAATAATAATAATAATAATATGTCAA CAAATAAGTGTTTTAAAATATTTAAGAAATATACCATACCATTAAATATAAAACAACTCTTCTTT CTTTTTCATCATTTACAAAAATTTAATTTAAATTATGAAATTATCCTTTTATATAACCATTTGTT GAAATATAATAAATATTTTAAGAGAAATATGTATTTCGACAAAGATACAGAAATTGTAAGAAAAA AAAAGAAAGATATAAAATCTTCAAGGGATATATATAGAAATATTTTTTCTATTTATATTAATTCC ATTTTAAATGTAGATAATTTATTATTATTAAATAATGAGGAAGAA Found at i:681487 original size:1 final size:1 Alignment explanation
Indices: 681481--681514 Score: 33 Period size: 1 Copynumber: 34.0 Consensus size: 1 681471 AAAATAAATG ** * * * 681481 AAAAAAAAAAAAATTATAAAAAAATAATAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 681515 TAACAATATT Statistics Matches: 25, Mismatches: 8, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 1 25 1.00 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (1 bp): A Left flanking sequence: Indices 680981 -- 681480 AAGTAAGAGCATGATGTTTTATAATTACAACTTTGAAGAATTATATTATTTTATGGAAACATATT TAGATGATTATATAAATAAATATTATTTAATATGTAATGATAAAAATAAAGAAGATGAAATAATT TTAAATATAAAACCTATTTTATATTTGTTTCAAATAAACATTCTCTTTTTTTTTAAATTATTACA TGTATTAGACATATGTAATTATAAAAATATTGCCTTGTCTATTATTAATGAGTGTAAAAAAAAAA AATGGTTTAAAATTATTAATAGAAAGGTTATAAAATTATTAATAAATAAATTTAAACGTACAAAT AATAAAAATTATAAAAAGAATTTGTATATATACTCCTTAAGATTTATTGAAAATAAGGCAATATC TGAATATATGGATATATATAATAAATATAAAATAATAATAAATTCATATGATAAAAAATGTATTA AAAAAAATTTCTATTCGTTCATTGAAAAAGATATCAAAATAAATG Right flanking sequence: Indices 681515 -- 682014 TAACAATATTAATAATTATAATAATAATTATAATAATAATTATAATAATAATTATAATAATAATT ATAATAATAATAATAATAATATGTCAACAAATAAGTGTTTTAAAATATTTAAGAAATATACCATA CCATTAAATATAAAACAACTCTTCTTTCTTTTTCATCATTTACAAAAATTTAATTTAAATTATGA AATTATCCTTTTATATAACCATTTGTTGAAATATAATAAATATTTTAAGAGAAATATGTATTTCG ACAAAGATACAGAAATTGTAAGAAAAAAAAAGAAAGATATAAAATCTTCAAGGGATATATATAGA AATATTTTTTCTATTTATATTAATTCCATTTTAAATGTAGATAATTTATTATTATTAAATAATGA GGAAGAAATAATAAAAAAAATAAAAAATAAAAAAATAAAAATAAAAATAAAAAAATTTATATGTC CATCTACATATTGTATCCTTTATAAAACCCCTTTGTATATATTTC Found at i:681538 original size:3 final size:3 Alignment explanation
Indices: 681492--681600 Score: 134 Period size: 3 Copynumber: 37.3 Consensus size: 3 681482 AAAAAAAAAA * * * * * 681492 AAT TAT AA- AAA AAT AAT AA- AA- AAT AAC AAT ATT AAT AAT TAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT * * * * 681537 AAT AAT TAT AAT AAT AAT TAT AAT AAT AAT TAT AAT AAT AAT TAT AAT 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT 681585 AAT AAT AAT AAT AAT A 1 AAT AAT AAT AAT AAT A 681601 TGTCAACAAA Statistics Matches: 87, Mismatches: 17, Indels: 4 0.81 0.16 0.04 Matches are distributed among these distances: 2 6 0.07 3 81 0.93 ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36 Consensus pattern (3 bp): AAT Left flanking sequence: Indices 680992 -- 681491 TGATGTTTTATAATTACAACTTTGAAGAATTATATTATTTTATGGAAACATATTTAGATGATTAT ATAAATAAATATTATTTAATATGTAATGATAAAAATAAAGAAGATGAAATAATTTTAAATATAAA ACCTATTTTATATTTGTTTCAAATAAACATTCTCTTTTTTTTTAAATTATTACATGTATTAGACA TATGTAATTATAAAAATATTGCCTTGTCTATTATTAATGAGTGTAAAAAAAAAAAATGGTTTAAA ATTATTAATAGAAAGGTTATAAAATTATTAATAAATAAATTTAAACGTACAAATAATAAAAATTA TAAAAAGAATTTGTATATATACTCCTTAAGATTTATTGAAAATAAGGCAATATCTGAATATATGG ATATATATAATAAATATAAAATAATAATAAATTCATATGATAAAAAATGTATTAAAAAAAATTTC TATTCGTTCATTGAAAAAGATATCAAAATAAATGAAAAAAAAAAA Right flanking sequence: Indices 681601 -- 682100 TGTCAACAAATAAGTGTTTTAAAATATTTAAGAAATATACCATACCATTAAATATAAAACAACTC TTCTTTCTTTTTCATCATTTACAAAAATTTAATTTAAATTATGAAATTATCCTTTTATATAACCA TTTGTTGAAATATAATAAATATTTTAAGAGAAATATGTATTTCGACAAAGATACAGAAATTGTAA GAAAAAAAAAGAAAGATATAAAATCTTCAAGGGATATATATAGAAATATTTTTTCTATTTATATT AATTCCATTTTAAATGTAGATAATTTATTATTATTAAATAATGAGGAAGAAATAATAAAAAAAAT AAAAAATAAAAAAATAAAAATAAAAATAAAAAAATTTATATGTCCATCTACATATTGTATCCTTT ATAAAACCCCTTTGTATATATTTCTTCATTTTATAAAAAAGTATAGAAACAAGAAACTACAAATC GTACAACAAAAATATGATTATACTTGCTATCATCATTTTGATGAT Found at i:681701 original size:5 final size:5 Alignment explanation
Indices: 681691--681706 Score: 25 Period size: 5 Copynumber: 3.2 Consensus size: 5 681681 CATTTACAAA * 681691 AATTT AATTT AAATT A 1 AATTT AATTT AATTT A 681707 TGAAATTATC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (5 bp): AATTT Left flanking sequence: Indices 681191 -- 681690 TAATTATAAAAATATTGCCTTGTCTATTATTAATGAGTGTAAAAAAAAAAAATGGTTTAAAATTA TTAATAGAAAGGTTATAAAATTATTAATAAATAAATTTAAACGTACAAATAATAAAAATTATAAA AAGAATTTGTATATATACTCCTTAAGATTTATTGAAAATAAGGCAATATCTGAATATATGGATAT ATATAATAAATATAAAATAATAATAAATTCATATGATAAAAAATGTATTAAAAAAAATTTCTATT CGTTCATTGAAAAAGATATCAAAATAAATGAAAAAAAAAAAAATTATAAAAAAATAATAAAAAAT AACAATATTAATAATTATAATAATAATTATAATAATAATTATAATAATAATTATAATAATAATTA TAATAATAATAATAATAATATGTCAACAAATAAGTGTTTTAAAATATTTAAGAAATATACCATAC CATTAAATATAAAACAACTCTTCTTTCTTTTTCATCATTTACAAA Right flanking sequence: Indices 681707 -- 682206 TGAAATTATCCTTTTATATAACCATTTGTTGAAATATAATAAATATTTTAAGAGAAATATGTATT TCGACAAAGATACAGAAATTGTAAGAAAAAAAAAGAAAGATATAAAATCTTCAAGGGATATATAT AGAAATATTTTTTCTATTTATATTAATTCCATTTTAAATGTAGATAATTTATTATTATTAAATAA TGAGGAAGAAATAATAAAAAAAATAAAAAATAAAAAAATAAAAATAAAAATAAAAAAATTTATAT GTCCATCTACATATTGTATCCTTTATAAAACCCCTTTGTATATATTTCTTCATTTTATAAAAAAG TATAGAAACAAGAAACTACAAATCGTACAACAAAAATATGATTATACTTGCTATCATCATTTTGA TGATGATAAGAATGTGAATCCTTTACAGAATAATAAATGTGTAGAAGAAGTTAAACATAGGAATA TAATGCAAAAGGAGGATCTCATAAAAAAAGACGATCTCATAAAAA Found at i:681923 original size:1 final size:1 Alignment explanation
Indices: 681917--681959 Score: 51 Period size: 1 Copynumber: 43.0 Consensus size: 1 681907 AAGAAATAAT * * * * * 681917 AAAAAAAATAAAAAATAAAAAAATAAAAATAAAAATAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 681960 TTTATATGTC Statistics Matches: 32, Mismatches: 10, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 1 32 1.00 ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12 Consensus pattern (1 bp): A Left flanking sequence: Indices 681417 -- 681916 TATGATAAAAAATGTATTAAAAAAAATTTCTATTCGTTCATTGAAAAAGATATCAAAATAAATGA AAAAAAAAAAAATTATAAAAAAATAATAAAAAATAACAATATTAATAATTATAATAATAATTATA ATAATAATTATAATAATAATTATAATAATAATTATAATAATAATAATAATAATATGTCAACAAAT AAGTGTTTTAAAATATTTAAGAAATATACCATACCATTAAATATAAAACAACTCTTCTTTCTTTT TCATCATTTACAAAAATTTAATTTAAATTATGAAATTATCCTTTTATATAACCATTTGTTGAAAT ATAATAAATATTTTAAGAGAAATATGTATTTCGACAAAGATACAGAAATTGTAAGAAAAAAAAAG AAAGATATAAAATCTTCAAGGGATATATATAGAAATATTTTTTCTATTTATATTAATTCCATTTT AAATGTAGATAATTTATTATTATTAAATAATGAGGAAGAAATAAT Right flanking sequence: Indices 681960 -- 682459 TTTATATGTCCATCTACATATTGTATCCTTTATAAAACCCCTTTGTATATATTTCTTCATTTTAT AAAAAAGTATAGAAACAAGAAACTACAAATCGTACAACAAAAATATGATTATACTTGCTATCATC ATTTTGATGATGATAAGAATGTGAATCCTTTACAGAATAATAAATGTGTAGAAGAAGTTAAACAT AGGAATATAATGCAAAAGGAGGATCTCATAAAAAAAGACGATCTCATAAAAAAAGACGATCTCAT AAAAAAAGATGATCTCAAAAAAAATGTGGATAATATAAACAGTGTGAATTACCTAAAAAATGATG ATAATATAAACAGTGTGAATTACCTAAAAAATGTTGATAATATAAACAGTGTGAATTACCTAAAA AATGATGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAATATTAACCA TGGCTCTATTAATATTAAAAAGTCCATCGAAGATATAATACGTGG Found at i:681936 original size:6 final size:6 Alignment explanation
Indices: 681910--681957 Score: 55 Period size: 6 Copynumber: 7.5 Consensus size: 6 681900 AATGAGGAAG * * 681910 AAATAA TAAAAA AAATAAA AAATAAAA AAATAA AAATAA AAATAA AAA 1 AAATAA AAATAA AAAT-AA AAAT--AA AAATAA AAATAA AAATAA AAA 681958 AATTTATATG Statistics Matches: 36, Mismatches: 4, Indels: 4 0.82 0.09 0.09 Matches are distributed among these distances: 6 23 0.64 7 6 0.17 8 7 0.19 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (6 bp): AAATAA Left flanking sequence: Indices 681410 -- 681909 AAATTCATATGATAAAAAATGTATTAAAAAAAATTTCTATTCGTTCATTGAAAAAGATATCAAAA TAAATGAAAAAAAAAAAAATTATAAAAAAATAATAAAAAATAACAATATTAATAATTATAATAAT AATTATAATAATAATTATAATAATAATTATAATAATAATTATAATAATAATAATAATAATATGTC AACAAATAAGTGTTTTAAAATATTTAAGAAATATACCATACCATTAAATATAAAACAACTCTTCT TTCTTTTTCATCATTTACAAAAATTTAATTTAAATTATGAAATTATCCTTTTATATAACCATTTG TTGAAATATAATAAATATTTTAAGAGAAATATGTATTTCGACAAAGATACAGAAATTGTAAGAAA AAAAAAGAAAGATATAAAATCTTCAAGGGATATATATAGAAATATTTTTTCTATTTATATTAATT CCATTTTAAATGTAGATAATTTATTATTATTAAATAATGAGGAAG Right flanking sequence: Indices 681958 -- 682457 AATTTATATGTCCATCTACATATTGTATCCTTTATAAAACCCCTTTGTATATATTTCTTCATTTT ATAAAAAAGTATAGAAACAAGAAACTACAAATCGTACAACAAAAATATGATTATACTTGCTATCA TCATTTTGATGATGATAAGAATGTGAATCCTTTACAGAATAATAAATGTGTAGAAGAAGTTAAAC ATAGGAATATAATGCAAAAGGAGGATCTCATAAAAAAAGACGATCTCATAAAAAAAGACGATCTC ATAAAAAAAGATGATCTCAAAAAAAATGTGGATAATATAAACAGTGTGAATTACCTAAAAAATGA TGATAATATAAACAGTGTGAATTACCTAAAAAATGTTGATAATATAAACAGTGTGAATTACCTAA AAAATGATGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAATATTAAC CATGGCTCTATTAATATTAAAAAGTCCATCGAAGATATAATACGT Found at i:682627 original size:6 final size:6 Alignment explanation
Indices: 682608--682642 Score: 35 Period size: 6 Copynumber: 6.2 Consensus size: 6 682598 TATTATAATG * * * 682608 AAATAT ATACAT AAACAT AAA-AT AAA-AT ATACAT A 1 AAACAT AAACAT AAACAT AAACAT AAACAT AAACAT A 682643 TGACATTTTA Statistics Matches: 24, Mismatches: 4, Indels: 2 0.80 0.13 0.07 Matches are distributed among these distances: 5 9 0.38 6 15 0.62 ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26 Consensus pattern (6 bp): AAACAT Left flanking sequence: Indices 682108 -- 682607 ATGTGAATCCTTTACAGAATAATAAATGTGTAGAAGAAGTTAAACATAGGAATATAATGCAAAAG GAGGATCTCATAAAAAAAGACGATCTCATAAAAAAAGACGATCTCATAAAAAAAGATGATCTCAA AAAAAATGTGGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAGTGTGA ATTACCTAAAAAATGTTGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAAC AGTGTGAATTACCTAAAAAATGATGATAATATAAACAATATTAACCATGGCTCTATTAATATTAA AAAGTCCATCGAAGATATAATACGTGGAAACGATTTCTTTAGTTCCCTTGATGAAGAGACATTAA AGAAATTGAAAAAAAGTAAACTGCTGAAGAAATTTTTTAATGATGCACATAATCCTACATATAAA CTATTAACAGAAAAAGATTACAGATTAATATTTTATATTATAATG Right flanking sequence: Indices 682643 -- 683142 TGACATTTTATGTAATGATAAAGAAAATAATTTAAATATAAAGAAAAAAAATAAAAATAGAAATA AATATTATAATAAGATATTATATATATATTTATATTTTTTATTGACTTTAAAATGTTATATGAAT ATATATAAAATGGATCAGATAAATTTTTTAATTATAATAAAAATATTTTTAATAATGTGTGACAT GACTACTTTTGAAAATTTTCTTTTAATAAATAAAAATAAGAAATTGATGGATGATAATATATTAT ATATAAATTCTTTAATAAATAATTATTTTTTTTTTGATAGTTATAAAAACAACATAAAAGAATTC AACGGAAAGGATAATAATATTATATTTCCAATGGAAAAAGGAATATGTATGGATATGTATATAAT GAAAGATAACAATTTATTAATATATAATATAAATTATTACAAATTAGTTAAAAAATTTTATAACA TATTTAAAAATGATAAAATATTAAAAATATATTTTTTCTTCGATT Found at i:682634 original size:5 final size:5 Alignment explanation
Indices: 682618--682636 Score: 29 Period size: 5 Copynumber: 3.6 Consensus size: 5 682608 AAATATATAC 682618 ATAAA CATAAA ATAAA ATA 1 ATAAA -ATAAA ATAAA ATA 682637 TACATATGAC Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 5 8 0.62 6 5 0.38 ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21 Consensus pattern (5 bp): ATAAA Left flanking sequence: Indices 682118 -- 682617 TTTACAGAATAATAAATGTGTAGAAGAAGTTAAACATAGGAATATAATGCAAAAGGAGGATCTCA TAAAAAAAGACGATCTCATAAAAAAAGACGATCTCATAAAAAAAGATGATCTCAAAAAAAATGTG GATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAGTGTGAATTACCTAAA AAATGTTGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAGTGTGAATT ACCTAAAAAATGATGATAATATAAACAATATTAACCATGGCTCTATTAATATTAAAAAGTCCATC GAAGATATAATACGTGGAAACGATTTCTTTAGTTCCCTTGATGAAGAGACATTAAAGAAATTGAA AAAAAGTAAACTGCTGAAGAAATTTTTTAATGATGCACATAATCCTACATATAAACTATTAACAG AAAAAGATTACAGATTAATATTTTATATTATAATGAAATATATAC Right flanking sequence: Indices 682637 -- 683136 TACATATGACATTTTATGTAATGATAAAGAAAATAATTTAAATATAAAGAAAAAAAATAAAAATA GAAATAAATATTATAATAAGATATTATATATATATTTATATTTTTTATTGACTTTAAAATGTTAT ATGAATATATATAAAATGGATCAGATAAATTTTTTAATTATAATAAAAATATTTTTAATAATGTG TGACATGACTACTTTTGAAAATTTTCTTTTAATAAATAAAAATAAGAAATTGATGGATGATAATA TATTATATATAAATTCTTTAATAAATAATTATTTTTTTTTTGATAGTTATAAAAACAACATAAAA GAATTCAACGGAAAGGATAATAATATTATATTTCCAATGGAAAAAGGAATATGTATGGATATGTA TATAATGAAAGATAACAATTTATTAATATATAATATAAATTATTACAAATTAGTTAAAAAATTTT ATAACATATTTAAAAATGATAAAATATTAAAAATATATTTTTTCT Found at i:682643 original size:6 final size:6 Alignment explanation
Indices: 682612--682648 Score: 30 Period size: 6 Copynumber: 6.3 Consensus size: 6 682602 ATAATGAAAT * * * 682612 ATATAC ATAAAC ATA-AA ATA-AA ATATAC ATATGAC AT 1 ATATAC ATATAC ATATAC ATATAC ATATAC ATAT-AC AT 682649 TTTATGTAAT Statistics Matches: 26, Mismatches: 3, Indels: 3 0.81 0.09 0.09 Matches are distributed among these distances: 5 9 0.35 6 13 0.50 7 4 0.15 ACGTcount: A:0.59, C:0.11, G:0.03, T:0.27 Consensus pattern (6 bp): ATATAC Left flanking sequence: Indices 682112 -- 682611 GAATCCTTTACAGAATAATAAATGTGTAGAAGAAGTTAAACATAGGAATATAATGCAAAAGGAGG ATCTCATAAAAAAAGACGATCTCATAAAAAAAGACGATCTCATAAAAAAAGATGATCTCAAAAAA AATGTGGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAGTGTGAATTA CCTAAAAAATGTTGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAGTG TGAATTACCTAAAAAATGATGATAATATAAACAATATTAACCATGGCTCTATTAATATTAAAAAG TCCATCGAAGATATAATACGTGGAAACGATTTCTTTAGTTCCCTTGATGAAGAGACATTAAAGAA ATTGAAAAAAAGTAAACTGCTGAAGAAATTTTTTAATGATGCACATAATCCTACATATAAACTAT TAACAGAAAAAGATTACAGATTAATATTTTATATTATAATGAAAT Right flanking sequence: Indices 682649 -- 683148 TTTATGTAATGATAAAGAAAATAATTTAAATATAAAGAAAAAAAATAAAAATAGAAATAAATATT ATAATAAGATATTATATATATATTTATATTTTTTATTGACTTTAAAATGTTATATGAATATATAT AAAATGGATCAGATAAATTTTTTAATTATAATAAAAATATTTTTAATAATGTGTGACATGACTAC TTTTGAAAATTTTCTTTTAATAAATAAAAATAAGAAATTGATGGATGATAATATATTATATATAA ATTCTTTAATAAATAATTATTTTTTTTTTGATAGTTATAAAAACAACATAAAAGAATTCAACGGA AAGGATAATAATATTATATTTCCAATGGAAAAAGGAATATGTATGGATATGTATATAATGAAAGA TAACAATTTATTAATATATAATATAAATTATTACAAATTAGTTAAAAAATTTTATAACATATTTA AAAATGATAAAATATTAAAAATATATTTTTTCTTCGATTGTAGAA Found at i:682698 original size:6 final size:6 Alignment explanation
Indices: 682675--682720 Score: 41 Period size: 6 Copynumber: 7.5 Consensus size: 6 682665 GAAAATAATT * * * * * * 682675 TAAATA TAAAGAA AAAAAA TAAAAA TAGAAA TAAATA TTATAA TAA 1 TAAAAA TAAA-AA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAA 682721 GATATTATAT Statistics Matches: 29, Mismatches: 10, Indels: 2 0.71 0.24 0.05 Matches are distributed among these distances: 6 25 0.86 7 4 0.14 ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24 Consensus pattern (6 bp): TAAAAA Left flanking sequence: Indices 682175 -- 682674 GGATCTCATAAAAAAAGACGATCTCATAAAAAAAGACGATCTCATAAAAAAAGATGATCTCAAAA AAAATGTGGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAGTGTGAAT TACCTAAAAAATGTTGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAG TGTGAATTACCTAAAAAATGATGATAATATAAACAATATTAACCATGGCTCTATTAATATTAAAA AGTCCATCGAAGATATAATACGTGGAAACGATTTCTTTAGTTCCCTTGATGAAGAGACATTAAAG AAATTGAAAAAAAGTAAACTGCTGAAGAAATTTTTTAATGATGCACATAATCCTACATATAAACT ATTAACAGAAAAAGATTACAGATTAATATTTTATATTATAATGAAATATATACATAAACATAAAA TAAAATATACATATGACATTTTATGTAATGATAAAGAAAATAATT Right flanking sequence: Indices 682721 -- 683220 GATATTATATATATATTTATATTTTTTATTGACTTTAAAATGTTATATGAATATATATAAAATGG ATCAGATAAATTTTTTAATTATAATAAAAATATTTTTAATAATGTGTGACATGACTACTTTTGAA AATTTTCTTTTAATAAATAAAAATAAGAAATTGATGGATGATAATATATTATATATAAATTCTTT AATAAATAATTATTTTTTTTTTGATAGTTATAAAAACAACATAAAAGAATTCAACGGAAAGGATA ATAATATTATATTTCCAATGGAAAAAGGAATATGTATGGATATGTATATAATGAAAGATAACAAT TTATTAATATATAATATAAATTATTACAAATTAGTTAAAAAATTTTATAACATATTTAAAAATGA TAAAATATTAAAAATATATTTTTTCTTCGATTGTAGAAAAATATCACACACATTATTAAATTTAT CATCAATCTTTTATAATTTACAATTTTTAAACAATCAACAATTTG Found at i:682733 original size:2 final size:2 Alignment explanation
Indices: 682722--682742 Score: 28 Period size: 2 Copynumber: 11.0 Consensus size: 2 682712 TTATAATAAG * 682722 AT AT -T AT AT AT AT AT TT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT 682743 TTTTTATTGA Statistics Matches: 16, Mismatches: 2, Indels: 2 0.80 0.10 0.10 Matches are distributed among these distances: 1 1 0.06 2 15 0.94 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (2 bp): AT Left flanking sequence: Indices 682222 -- 682721 AAAAAGATGATCTCAAAAAAAATGTGGATAATATAAACAGTGTGAATTACCTAAAAAATGATGAT AATATAAACAGTGTGAATTACCTAAAAAATGTTGATAATATAAACAGTGTGAATTACCTAAAAAA TGATGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAATATTAACCATG GCTCTATTAATATTAAAAAGTCCATCGAAGATATAATACGTGGAAACGATTTCTTTAGTTCCCTT GATGAAGAGACATTAAAGAAATTGAAAAAAAGTAAACTGCTGAAGAAATTTTTTAATGATGCACA TAATCCTACATATAAACTATTAACAGAAAAAGATTACAGATTAATATTTTATATTATAATGAAAT ATATACATAAACATAAAATAAAATATACATATGACATTTTATGTAATGATAAAGAAAATAATTTA AATATAAAGAAAAAAAATAAAAATAGAAATAAATATTATAATAAG Right flanking sequence: Indices 682743 -- 683242 TTTTTATTGACTTTAAAATGTTATATGAATATATATAAAATGGATCAGATAAATTTTTTAATTAT AATAAAAATATTTTTAATAATGTGTGACATGACTACTTTTGAAAATTTTCTTTTAATAAATAAAA ATAAGAAATTGATGGATGATAATATATTATATATAAATTCTTTAATAAATAATTATTTTTTTTTT GATAGTTATAAAAACAACATAAAAGAATTCAACGGAAAGGATAATAATATTATATTTCCAATGGA AAAAGGAATATGTATGGATATGTATATAATGAAAGATAACAATTTATTAATATATAATATAAATT ATTACAAATTAGTTAAAAAATTTTATAACATATTTAAAAATGATAAAATATTAAAAATATATTTT TTCTTCGATTGTAGAAAAATATCACACACATTATTAAATTTATCATCAATCTTTTATAATTTACA ATTTTTAAACAATCAACAATTTGTAAAATATATATATGATAAAGA Found at i:682741 original size:6 final size:6 Alignment explanation
Indices: 682725--682744 Score: 33 Period size: 6 Copynumber: 3.3 Consensus size: 6 682715 TAATAAGATA * 682725 TTATAT ATATAT TTATAT TT 1 TTATAT TTATAT TTATAT TT 682745 TTTATTGACT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65 Consensus pattern (6 bp): TTATAT Left flanking sequence: Indices 682225 -- 682724 AAGATGATCTCAAAAAAAATGTGGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAAT ATAAACAGTGTGAATTACCTAAAAAATGTTGATAATATAAACAGTGTGAATTACCTAAAAAATGA TGATAATATAAACAGTGTGAATTACCTAAAAAATGATGATAATATAAACAATATTAACCATGGCT CTATTAATATTAAAAAGTCCATCGAAGATATAATACGTGGAAACGATTTCTTTAGTTCCCTTGAT GAAGAGACATTAAAGAAATTGAAAAAAAGTAAACTGCTGAAGAAATTTTTTAATGATGCACATAA TCCTACATATAAACTATTAACAGAAAAAGATTACAGATTAATATTTTATATTATAATGAAATATA TACATAAACATAAAATAAAATATACATATGACATTTTATGTAATGATAAAGAAAATAATTTAAAT ATAAAGAAAAAAAATAAAAATAGAAATAAATATTATAATAAGATA Right flanking sequence: Indices 682745 -- 683244 TTTATTGACTTTAAAATGTTATATGAATATATATAAAATGGATCAGATAAATTTTTTAATTATAA TAAAAATATTTTTAATAATGTGTGACATGACTACTTTTGAAAATTTTCTTTTAATAAATAAAAAT AAGAAATTGATGGATGATAATATATTATATATAAATTCTTTAATAAATAATTATTTTTTTTTTGA TAGTTATAAAAACAACATAAAAGAATTCAACGGAAAGGATAATAATATTATATTTCCAATGGAAA AAGGAATATGTATGGATATGTATATAATGAAAGATAACAATTTATTAATATATAATATAAATTAT TACAAATTAGTTAAAAAATTTTATAACATATTTAAAAATGATAAAATATTAAAAATATATTTTTT CTTCGATTGTAGAAAAATATCACACACATTATTAAATTTATCATCAATCTTTTATAATTTACAAT TTTTAAACAATCAACAATTTGTAAAATATATATATGATAAAGAAG Found at i:683469 original size:4 final size:4 Alignment explanation
Indices: 683461--683510 Score: 58 Period size: 4 Copynumber: 12.5 Consensus size: 4 683451 GTATCAACCA * * * * * * 683461 ATAA ATAA ATAA ATAT ATAT ATAT ATAT ATAT ATAT ATGT ACAT ACAT 1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT 683509 AT 1 AT 683511 TGTTTGGTTT Statistics Matches: 41, Mismatches: 5, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 4 41 1.00 ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40 Consensus pattern (4 bp): ATAT Left flanking sequence: Indices 682961 -- 683460 AGAATTCAACGGAAAGGATAATAATATTATATTTCCAATGGAAAAAGGAATATGTATGGATATGT ATATAATGAAAGATAACAATTTATTAATATATAATATAAATTATTACAAATTAGTTAAAAAATTT TATAACATATTTAAAAATGATAAAATATTAAAAATATATTTTTTCTTCGATTGTAGAAAAATATC ACACACATTATTAAATTTATCATCAATCTTTTATAATTTACAATTTTTAAACAATCAACAATTTG TAAAATATATATATGATAAAGAAGGAATTTTATTATCTCCTAAAAATATTTATGACATTTCCAAG TTTGTTATATTTTATGGAAATTGCATGCTTAAAAAGAGCAAAATTTTTGAATTCTTAACATCTTC TTTTGGTAAAAATGTTTCTATTCAAAAAAATGATTTAATTAAAGATGCTTATGTCTTTTTAATCA GAGGAGAATAAAAGGGAAAGAACAAATCAGCAAATGTATCAACCA Right flanking sequence: Indices 683511 -- 684010 TGTTTGGTTTGGTTTGGTTTGGTTAAAAAGAAAAAATTAAATTGTGGTGTGTAAAAAAATTAGTG ATTCATAATATAAGAGGAAGCAATTATTAATATGTCGTCAAGTTTTTGTAAGGACAAAATTTTAT TAACGTTGAAAAATTAATTTAATTTTTAATTATAATTAAAAAATAAGAAAAAAGAAAGATATAAA AATAAAGAACTAATTAAAATATTAAAATAAACCATATAAAAGAAATTATAACTTTATATATATAT ATATATTATTACGATATGTTGTCGCATGAAATAATCTGGACATTTCTTGGGATACATGCATGTAC CAGAACAAAATAAAATATATACATATATATTAAAATAAATTTATTTTATATTTATAAAATGGTTA CATATCCATTTATAGGCCTACACATAGTTTAATATAAAACGAGCTTCTATTTTAAAAATGAGACA TTTAAAAAAATACAAACAATATATATAATATTTTGTACGATCTGT Found at