TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 102845780 P. falciparum 3D7 GENOMIC chr6 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1418244 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Found at i: i:702081 original size:5 final size:5 Alignment explanation
Indices: 702071--702088 Score: 29 Period size: 5 Copynumber: 3.6 Consensus size: 5 702061 ATTTTGATGA * 702071 TGTTT TGTTT TTTTT TGT 1 TGTTT TGTTT TGTTT TGT 702089 AAAGTGTGAA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83 Consensus pattern (5 bp): TGTTT Left flanking sequence: Indices 701571 -- 702070 GGATTAAATGATAATGTTACACAAATTAATGAATATAATATATTAAATGAAATATGTGATGTCAA AAATATGAACAATTCAGAATTTTATTATATGTTTGATGGTTTTTCAAGTAATTATTCAACTGATA CTTTATCATCAACATCGTTATTATTAGAAAATGATCTTAATGGTGATAATAAAAATTTTATACAA AGGAAAGAAAATAAAGATATATTAAAAAGTGATGCATTAAAAAGTGATGCATTAAAAAGTGATGA ATTAAAAAGTGATGCATTAAAAAATGATATGTCAAAAAAAAATTTAGATAAACAGAAATATTTTC AAACATTAAAAATGAAAGATTTAAAAAAGAAATTTTTATTTTCCATTAATAATATATTTAAAAAT GTAAATATGTACTTTTTTAATTTTAAAAATGTTATAAAATATTTTGGTTTATTAAAATTATATAA TTATCATTTTTATGTGAATAATAAATGCTCTTCATATTTTGATGA Right flanking sequence: Indices 702089 -- 702588 AAAGTGTGAATTATTATATTGGGATCCCTTATATCAATTTTTTATGAGTAAAAAGAAAAAGAAAA GGATATTGAATTATTTTGATGAGGATATAAATAGTTCTAGTAGTATGAAAAAAAATGAATCAAAT AAGAACAACTTGAATATCTTAGATAGTAATAAAATGGACAACAATGATAAGCATTTTAATATAGA TGAGGATAATAAGAAATTTTTTTCTTTATATTCTTCTCCTTCTCCACAGTATGATAACGATGAAA AAAATATATATAATAATACAAACGAAAGAACTATAGAATATGACATGGACATGTCAGGATCAAGT TCAAGTAGCAATTTTTCATTGTCACATACTAGCTCATGTAATGAAAACAATTTGAATAACGAAAA TATATTGGATAGAGAGGAGGAAAATGTTAAAAAAATATGCTCTAATATTTTTAAAAATAAACTAT TTAAGAAGAAAAAATATAAATTAAGAAAAACGTTTTTTCACAACC Found at i:702154 original size:5 final size:6 Alignment explanation
Indices: 702138--702153 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 702128 TTTTATGAGT 702138 AAAAAG AAAAAG AAAA 1 AAAAAG AAAAAG AAAA 702154 GGATATTGAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00 Consensus pattern (6 bp): AAAAAG Left flanking sequence: Indices 701638 -- 702137 ATATGAACAATTCAGAATTTTATTATATGTTTGATGGTTTTTCAAGTAATTATTCAACTGATACT TTATCATCAACATCGTTATTATTAGAAAATGATCTTAATGGTGATAATAAAAATTTTATACAAAG GAAAGAAAATAAAGATATATTAAAAAGTGATGCATTAAAAAGTGATGCATTAAAAAGTGATGAAT TAAAAAGTGATGCATTAAAAAATGATATGTCAAAAAAAAATTTAGATAAACAGAAATATTTTCAA ACATTAAAAATGAAAGATTTAAAAAAGAAATTTTTATTTTCCATTAATAATATATTTAAAAATGT AAATATGTACTTTTTTAATTTTAAAAATGTTATAAAATATTTTGGTTTATTAAAATTATATAATT ATCATTTTTATGTGAATAATAAATGCTCTTCATATTTTGATGATGTTTTGTTTTTTTTTGTAAAG TGTGAATTATTATATTGGGATCCCTTATATCAATTTTTTATGAGT Right flanking sequence: Indices 702154 -- 702653 GGATATTGAATTATTTTGATGAGGATATAAATAGTTCTAGTAGTATGAAAAAAAATGAATCAAAT AAGAACAACTTGAATATCTTAGATAGTAATAAAATGGACAACAATGATAAGCATTTTAATATAGA TGAGGATAATAAGAAATTTTTTTCTTTATATTCTTCTCCTTCTCCACAGTATGATAACGATGAAA AAAATATATATAATAATACAAACGAAAGAACTATAGAATATGACATGGACATGTCAGGATCAAGT TCAAGTAGCAATTTTTCATTGTCACATACTAGCTCATGTAATGAAAACAATTTGAATAACGAAAA TATATTGGATAGAGAGGAGGAAAATGTTAAAAAAATATGCTCTAATATTTTTAAAAATAAACTAT TTAAGAAGAAAAAATATAAATTAAGAAAAACGTTTTTTCACAACCCTAGTATAAAATCATTCGAG TGGTATAAATTTATGGATGAGCTAATATTAATATATGATAATATT Found at i:702327 original size:6 final size:6 Alignment explanation
Indices: 702316--702328 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 702306 TCTTTATATT 702316 CTTCTC CTTCTC C 1 CTTCTC CTTCTC C 702329 ACAGTATGAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46 Consensus pattern (6 bp): CTTCTC Left flanking sequence: Indices 701816 -- 702315 ATTAAAAAGTGATGAATTAAAAAGTGATGCATTAAAAAATGATATGTCAAAAAAAAATTTAGATA AACAGAAATATTTTCAAACATTAAAAATGAAAGATTTAAAAAAGAAATTTTTATTTTCCATTAAT AATATATTTAAAAATGTAAATATGTACTTTTTTAATTTTAAAAATGTTATAAAATATTTTGGTTT ATTAAAATTATATAATTATCATTTTTATGTGAATAATAAATGCTCTTCATATTTTGATGATGTTT TGTTTTTTTTTGTAAAGTGTGAATTATTATATTGGGATCCCTTATATCAATTTTTTATGAGTAAA AAGAAAAAGAAAAGGATATTGAATTATTTTGATGAGGATATAAATAGTTCTAGTAGTATGAAAAA AAATGAATCAAATAAGAACAACTTGAATATCTTAGATAGTAATAAAATGGACAACAATGATAAGC ATTTTAATATAGATGAGGATAATAAGAAATTTTTTTCTTTATATT Right flanking sequence: Indices 702329 -- 702828 ACAGTATGATAACGATGAAAAAAATATATATAATAATACAAACGAAAGAACTATAGAATATGACA TGGACATGTCAGGATCAAGTTCAAGTAGCAATTTTTCATTGTCACATACTAGCTCATGTAATGAA AACAATTTGAATAACGAAAATATATTGGATAGAGAGGAGGAAAATGTTAAAAAAATATGCTCTAA TATTTTTAAAAATAAACTATTTAAGAAGAAAAAATATAAATTAAGAAAAACGTTTTTTCACAACC CTAGTATAAAATCATTCGAGTGGTATAAATTTATGGATGAGCTAATATTAATATATGATAATATT GAAGAAGAAAAAGATATTTTAAAGAAATTATATGAGCATATATTTAACAAAAAGATATATGAATT AATTAATGTGTGGAATCCTTTATCCTTGAAACAAAGCTTTCATTTATCAAGAATTATAAATGATT TTATTTTATATAATGATAATATAAATGAATTACGTGATAAAATAA Found at i:702807 original size:5 final size:5 Alignment explanation
Indices: 702791--702807 Score: 25 Period size: 5 Copynumber: 3.2 Consensus size: 5 702781 ATTTTATTTT 702791 ATATA ATGATA ATATA A 1 ATATA AT-ATA ATATA A 702808 ATGAATTACG Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 5 6 0.55 6 5 0.45 ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35 Consensus pattern (5 bp): ATATA Left flanking sequence: Indices 702291 -- 702790 AATAAGAAATTTTTTTCTTTATATTCTTCTCCTTCTCCACAGTATGATAACGATGAAAAAAATAT ATATAATAATACAAACGAAAGAACTATAGAATATGACATGGACATGTCAGGATCAAGTTCAAGTA GCAATTTTTCATTGTCACATACTAGCTCATGTAATGAAAACAATTTGAATAACGAAAATATATTG GATAGAGAGGAGGAAAATGTTAAAAAAATATGCTCTAATATTTTTAAAAATAAACTATTTAAGAA GAAAAAATATAAATTAAGAAAAACGTTTTTTCACAACCCTAGTATAAAATCATTCGAGTGGTATA AATTTATGGATGAGCTAATATTAATATATGATAATATTGAAGAAGAAAAAGATATTTTAAAGAAA TTATATGAGCATATATTTAACAAAAAGATATATGAATTAATTAATGTGTGGAATCCTTTATCCTT GAAACAAAGCTTTCATTTATCAAGAATTATAAATGATTTTATTTT Right flanking sequence: Indices 702808 -- 703307 ATGAATTACGTGATAAAATAAAAGATAAGATACAAACATATATAACAACTTTTTTACAATGTTAT AAAAATATAACTAGCCAAAAGAAAAAAAATATATTTTTAATGAGATGTTTAAAATTTTTGAAAAG TATGAAAAACATTTTACAATTATTATGTAATGAAGAATTATATGATATAGTAAAAAATGTATTTA ATAATTATGTTTTACCAAATTGTGATGATGGGAATAAATTACATAATTTGATTGTATTAAAAATA ATTCAAGTAATACATTCATTGGATAATATTCCGAAGGAGGATAGTTTCTTTCATAAGACAACTGA AATTATGAGTAAAATATCTGATTGCTTGAAGACTGGTTATTTTGATATGTTGAAGGTCGAAAATG GGTGTATGATAAAATAAAAAGTTTGAATAGTACAACTACAAGGATGTCTAATATTATGAATTATG TGTTTATATATATTATTTTGTATTTTATTTTATCATATTTTTTTT Found at i:703336 original size:4 final size:4 Alignment explanation
Indices: 703301--703355 Score: 52 Period size: 4 Copynumber: 13.8 Consensus size: 4 703291 TTTATCATAT * * * * * 703301 TTTT TTTA TTTG TTTA TTTG TATA TTTA -TTA TTTA TTTTA TTTA TTTT 1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA * 703349 TTTT TTT 1 TTTA TTT 703356 TGTGGGGATT Statistics Matches: 41, Mismatches: 8, Indels: 4 0.77 0.15 0.08 Matches are distributed among these distances: 3 3 0.07 4 34 0.83 5 4 0.10 ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80 Consensus pattern (4 bp): TTTA Left flanking sequence: Indices 702801 -- 703300 AATATAAATGAATTACGTGATAAAATAAAAGATAAGATACAAACATATATAACAACTTTTTTACA ATGTTATAAAAATATAACTAGCCAAAAGAAAAAAAATATATTTTTAATGAGATGTTTAAAATTTT TGAAAAGTATGAAAAACATTTTACAATTATTATGTAATGAAGAATTATATGATATAGTAAAAAAT GTATTTAATAATTATGTTTTACCAAATTGTGATGATGGGAATAAATTACATAATTTGATTGTATT AAAAATAATTCAAGTAATACATTCATTGGATAATATTCCGAAGGAGGATAGTTTCTTTCATAAGA CAACTGAAATTATGAGTAAAATATCTGATTGCTTGAAGACTGGTTATTTTGATATGTTGAAGGTC GAAAATGGGTGTATGATAAAATAAAAAGTTTGAATAGTACAACTACAAGGATGTCTAATATTATG AATTATGTGTTTATATATATTATTTTGTATTTTATTTTATCATAT Right flanking sequence: Indices 703356 -- 703855 TGTGGGGATTTCTTTTTTTATAAAATGATTCATCCGACATATATTTTTTACATAAAAATATGGAT TTCATATATGTGTTACCAATATAAAGACTTTATATATATATATTAATATATTTATATATTTATAT ATTTATAATTTTTCAAATGAAAGTTTCATGTATTAAAAATTAATTATATTTTTTTTTTTGAAATG ATTTTCCAAAGCAGGTGTTTATTAAGAGTATAGACAGGTGAAAAAAAAAATAACAAAATGAATAA ATTAAAAAATAAAAAATAAAAAGGTTAAAAAATAAAAAAATAAAAAAATAAAAAAATAAAAAATA AAAAAATAAAAAAATAAAAAATAAAAAATAAAAATATTTATAAATATACATATATAATAATCATT CATTTGATTATTAGAAGCTTATATATAAAATTAATTATTAAAAAATATATACATATTTATATATA TATTTCAAAATTACAAATGTGTCAGTTTTGTATTAATGCCTTTAA Found at i:703458 original size:2 final size:2 Alignment explanation
Indices: 703451--703492 Score: 49 Period size: 2 Copynumber: 21.0 Consensus size: 2 703441 ATAAAGACTT * * * * * 703451 TA TA TA TA TA TA TT AA TA TA TT TA TA TA TT TA TA TA TT TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 703493 ATTTTTCAAA Statistics Matches: 30, Mismatches: 10, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (2 bp): TA Left flanking sequence: Indices 702951 -- 703450 TTACAATTATTATGTAATGAAGAATTATATGATATAGTAAAAAATGTATTTAATAATTATGTTTT ACCAAATTGTGATGATGGGAATAAATTACATAATTTGATTGTATTAAAAATAATTCAAGTAATAC ATTCATTGGATAATATTCCGAAGGAGGATAGTTTCTTTCATAAGACAACTGAAATTATGAGTAAA ATATCTGATTGCTTGAAGACTGGTTATTTTGATATGTTGAAGGTCGAAAATGGGTGTATGATAAA ATAAAAAGTTTGAATAGTACAACTACAAGGATGTCTAATATTATGAATTATGTGTTTATATATAT TATTTTGTATTTTATTTTATCATATTTTTTTTATTTGTTTATTTGTATATTTATTATTTATTTTA TTTATTTTTTTTTTTTGTGGGGATTTCTTTTTTTATAAAATGATTCATCCGACATATATTTTTTA CATAAAAATATGGATTTCATATATGTGTTACCAATATAAAGACTT Right flanking sequence: Indices 703493 -- 703992 ATTTTTCAAATGAAAGTTTCATGTATTAAAAATTAATTATATTTTTTTTTTTGAAATGATTTTCC AAAGCAGGTGTTTATTAAGAGTATAGACAGGTGAAAAAAAAAATAACAAAATGAATAAATTAAAA AATAAAAAATAAAAAGGTTAAAAAATAAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAAAT AAAAAAATAAAAAATAAAAAATAAAAATATTTATAAATATACATATATAATAATCATTCATTTGA TTATTAGAAGCTTATATATAAAATTAATTATTAAAAAATATATACATATTTATATATATATTTCA AAATTACAAATGTGTCAGTTTTGTATTAATGCCTTTAAAAAGGTATTACATATTTATTGGTATAA AATATATATGAACAATTTAAAGCTATGTAATTTATAAATATATTTATATAATGCATATTATACCT TAACAATAATATATATATATATATATATATTTTTTTTTTTATTTT Found at i:703597 original size:1 final size:1 Alignment explanation
Indices: 703591--703714 Score: 94 Period size: 1 Copynumber: 124.0 Consensus size: 1 703581 TAGACAGGTG * * ** * ** * * **** * 703591 AAAAAAAAAATAACAAAATGAATAAATTAAAAAATAAAAAATAAAAAGGTTAAAAAATAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA * * * * * * * * 703656 TAAAAAAATAAAAAAATAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAATAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 703715 TATTTATAAA Statistics Matches: 87, Mismatches: 36, Indels: 0 0.71 0.29 0.00 Matches are distributed among these distances: 1 87 1.00 ACGTcount: A:0.82, C:0.01, G:0.02, T:0.15 Consensus pattern (1 bp): A Left flanking sequence: Indices 703091 -- 703590 TAATATTCCGAAGGAGGATAGTTTCTTTCATAAGACAACTGAAATTATGAGTAAAATATCTGATT GCTTGAAGACTGGTTATTTTGATATGTTGAAGGTCGAAAATGGGTGTATGATAAAATAAAAAGTT TGAATAGTACAACTACAAGGATGTCTAATATTATGAATTATGTGTTTATATATATTATTTTGTAT TTTATTTTATCATATTTTTTTTATTTGTTTATTTGTATATTTATTATTTATTTTATTTATTTTTT TTTTTTGTGGGGATTTCTTTTTTTATAAAATGATTCATCCGACATATATTTTTTACATAAAAATA TGGATTTCATATATGTGTTACCAATATAAAGACTTTATATATATATATTAATATATTTATATATT TATATATTTATAATTTTTCAAATGAAAGTTTCATGTATTAAAAATTAATTATATTTTTTTTTTTG AAATGATTTTCCAAAGCAGGTGTTTATTAAGAGTATAGACAGGTG Right flanking sequence: Indices 703715 -- 704214 TATTTATAAATATACATATATAATAATCATTCATTTGATTATTAGAAGCTTATATATAAAATTAA TTATTAAAAAATATATACATATTTATATATATATTTCAAAATTACAAATGTGTCAGTTTTGTATT AATGCCTTTAAAAAGGTATTACATATTTATTGGTATAAAATATATATGAACAATTTAAAGCTATG TAATTTATAAATATATTTATATAATGCATATTATACCTTAACAATAATATATATATATATATATA TATTTTTTTTTTTATTTTATTAATTACACATACATATCACCTATTTGCGTCTATTTTTTATGCTG CTGTCTGTGGTTGCTCTTGTGAAGGAGATATGTGCATCATGAATCCAAACTTATAATCATTATTC AAATAATCTATATATCCACTGACACCAAAACCTGAATAGTCTTGTGTGAAGACGGAAATTTTTCC ACTGGTATCAATAGAGCCTTGTACTTTTGCATGTCTGAAAGAATA Found at i:703795 original size:2 final size:2 Alignment explanation
Indices: 703790--703813 Score: 34 Period size: 2 Copynumber: 12.0 Consensus size: 2 703780 TTATTAAAAA * * 703790 AT AT AT AC AT AT TT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT 703814 TTCAAAATTA Statistics Matches: 18, Mismatches: 4, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 2 18 1.00 ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 703290 -- 703789 TTTTATCATATTTTTTTTATTTGTTTATTTGTATATTTATTATTTATTTTATTTATTTTTTTTTT TTGTGGGGATTTCTTTTTTTATAAAATGATTCATCCGACATATATTTTTTACATAAAAATATGGA TTTCATATATGTGTTACCAATATAAAGACTTTATATATATATATTAATATATTTATATATTTATA TATTTATAATTTTTCAAATGAAAGTTTCATGTATTAAAAATTAATTATATTTTTTTTTTTGAAAT GATTTTCCAAAGCAGGTGTTTATTAAGAGTATAGACAGGTGAAAAAAAAAATAACAAAATGAATA AATTAAAAAATAAAAAATAAAAAGGTTAAAAAATAAAAAAATAAAAAAATAAAAAAATAAAAAAT AAAAAAATAAAAAAATAAAAAATAAAAAATAAAAATATTTATAAATATACATATATAATAATCAT TCATTTGATTATTAGAAGCTTATATATAAAATTAATTATTAAAAA Right flanking sequence: Indices 703814 -- 704313 TTCAAAATTACAAATGTGTCAGTTTTGTATTAATGCCTTTAAAAAGGTATTACATATTTATTGGT ATAAAATATATATGAACAATTTAAAGCTATGTAATTTATAAATATATTTATATAATGCATATTAT ACCTTAACAATAATATATATATATATATATATATTTTTTTTTTTATTTTATTAATTACACATACA TATCACCTATTTGCGTCTATTTTTTATGCTGCTGTCTGTGGTTGCTCTTGTGAAGGAGATATGTG CATCATGAATCCAAACTTATAATCATTATTCAAATAATCTATATATCCACTGACACCAAAACCTG AATAGTCTTGTGTGAAGACGGAAATTTTTCCACTGGTATCAATAGAGCCTTGTACTTTTGCATGT CTGAAAGAATAATCCCAACCAAGTCTCATAGCTGATTCTTTTGTTTGTGGTGTAATTTCTAATTC TGTTCCTAAGGATAAACGGTCTGATATTTTTTTGGCATATTGTAT Found at i:703807 original size:6 final size:6 Alignment explanation
Indices: 703798--703815 Score: 29 Period size: 6 Copynumber: 3.0 Consensus size: 6 703788 AAATATATAC * 703798 ATATTT ATATAT ATATTT 1 ATATTT ATATTT ATATTT 703816 CAAAATTACA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61 Consensus pattern (6 bp): ATATTT Left flanking sequence: Indices 703298 -- 703797 TATTTTTTTTATTTGTTTATTTGTATATTTATTATTTATTTTATTTATTTTTTTTTTTTGTGGGG ATTTCTTTTTTTATAAAATGATTCATCCGACATATATTTTTTACATAAAAATATGGATTTCATAT ATGTGTTACCAATATAAAGACTTTATATATATATATTAATATATTTATATATTTATATATTTATA ATTTTTCAAATGAAAGTTTCATGTATTAAAAATTAATTATATTTTTTTTTTTGAAATGATTTTCC AAAGCAGGTGTTTATTAAGAGTATAGACAGGTGAAAAAAAAAATAACAAAATGAATAAATTAAAA AATAAAAAATAAAAAGGTTAAAAAATAAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAAAT AAAAAAATAAAAAATAAAAAATAAAAATATTTATAAATATACATATATAATAATCATTCATTTGA TTATTAGAAGCTTATATATAAAATTAATTATTAAAAAATATATAC Right flanking sequence: Indices 703816 -- 704315 CAAAATTACAAATGTGTCAGTTTTGTATTAATGCCTTTAAAAAGGTATTACATATTTATTGGTAT AAAATATATATGAACAATTTAAAGCTATGTAATTTATAAATATATTTATATAATGCATATTATAC CTTAACAATAATATATATATATATATATATATTTTTTTTTTTATTTTATTAATTACACATACATA TCACCTATTTGCGTCTATTTTTTATGCTGCTGTCTGTGGTTGCTCTTGTGAAGGAGATATGTGCA TCATGAATCCAAACTTATAATCATTATTCAAATAATCTATATATCCACTGACACCAAAACCTGAA TAGTCTTGTGTGAAGACGGAAATTTTTCCACTGGTATCAATAGAGCCTTGTACTTTTGCATGTCT GAAAGAATAATCCCAACCAAGTCTCATAGCTGATTCTTTTGTTTGTGGTGTAATTTCTAATTCTG TTCCTAAGGATAAACGGTCTGATATTTTTTTGGCATATTGTATTT Found at i:703930 original size:6 final size:6 Alignment explanation
Indices: 703912--703931 Score: 26 Period size: 6 Copynumber: 3.3 Consensus size: 6 703902 AAGCTATGTA ** 703912 ATTTAT AAATAT ATTTAT AT 1 ATTTAT ATTTAT ATTTAT AT 703932 AATGCATATT Statistics Matches: 10, Mismatches: 4, Indels: 0 0.71 0.29 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55 Consensus pattern (6 bp): ATTTAT Left flanking sequence: Indices 703412 -- 703911 AATATGGATTTCATATATGTGTTACCAATATAAAGACTTTATATATATATATTAATATATTTATA TATTTATATATTTATAATTTTTCAAATGAAAGTTTCATGTATTAAAAATTAATTATATTTTTTTT TTTGAAATGATTTTCCAAAGCAGGTGTTTATTAAGAGTATAGACAGGTGAAAAAAAAAATAACAA AATGAATAAATTAAAAAATAAAAAATAAAAAGGTTAAAAAATAAAAAAATAAAAAAATAAAAAAA TAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAATAAAAATATTTATAAATATACATATATA ATAATCATTCATTTGATTATTAGAAGCTTATATATAAAATTAATTATTAAAAAATATATACATAT TTATATATATATTTCAAAATTACAAATGTGTCAGTTTTGTATTAATGCCTTTAAAAAGGTATTAC ATATTTATTGGTATAAAATATATATGAACAATTTAAAGCTATGTA Right flanking sequence: Indices 703932 -- 704431 AATGCATATTATACCTTAACAATAATATATATATATATATATATATTTTTTTTTTTATTTTATTA ATTACACATACATATCACCTATTTGCGTCTATTTTTTATGCTGCTGTCTGTGGTTGCTCTTGTGA AGGAGATATGTGCATCATGAATCCAAACTTATAATCATTATTCAAATAATCTATATATCCACTGA CACCAAAACCTGAATAGTCTTGTGTGAAGACGGAAATTTTTCCACTGGTATCAATAGAGCCTTGT ACTTTTGCATGTCTGAAAGAATAATCCCAACCAAGTCTCATAGCTGATTCTTTTGTTTGTGGTGT AATTTCTAATTCTGTTCCTAAGGATAAACGGTCTGATATTTTTTTGGCATATTGTATTTTATATA AATGAGTTTGGTTTAACATAAACTCGGGTGATTTAAAGTTGGGTTGTCTAACAATTTGCATGGTT AAAACATTATTTTTATGATTATATCTTAAACCAAAAGATCCTATG Found at i:703963 original size:2 final size:2 Alignment explanation
Indices: 703956--703977 Score: 44 Period size: 2 Copynumber: 11.0 Consensus size: 2 703946 CTTAACAATA 703956 AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT 703978 TTTTTTTTTT Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 20 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 703456 -- 703955 ATATATATTAATATATTTATATATTTATATATTTATAATTTTTCAAATGAAAGTTTCATGTATTA AAAATTAATTATATTTTTTTTTTTGAAATGATTTTCCAAAGCAGGTGTTTATTAAGAGTATAGAC AGGTGAAAAAAAAAATAACAAAATGAATAAATTAAAAAATAAAAAATAAAAAGGTTAAAAAATAA AAAAATAAAAAAATAAAAAAATAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAATAAAAAT ATTTATAAATATACATATATAATAATCATTCATTTGATTATTAGAAGCTTATATATAAAATTAAT TATTAAAAAATATATACATATTTATATATATATTTCAAAATTACAAATGTGTCAGTTTTGTATTA ATGCCTTTAAAAAGGTATTACATATTTATTGGTATAAAATATATATGAACAATTTAAAGCTATGT AATTTATAAATATATTTATATAATGCATATTATACCTTAACAATA Right flanking sequence: Indices 703978 -- 704477 TTTTTTTTTTATTTTATTAATTACACATACATATCACCTATTTGCGTCTATTTTTTATGCTGCTG TCTGTGGTTGCTCTTGTGAAGGAGATATGTGCATCATGAATCCAAACTTATAATCATTATTCAAA TAATCTATATATCCACTGACACCAAAACCTGAATAGTCTTGTGTGAAGACGGAAATTTTTCCACT GGTATCAATAGAGCCTTGTACTTTTGCATGTCTGAAAGAATAATCCCAACCAAGTCTCATAGCTG ATTCTTTTGTTTGTGGTGTAATTTCTAATTCTGTTCCTAAGGATAAACGGTCTGATATTTTTTTG GCATATTGTATTTTATATAAATGAGTTTGGTTTAACATAAACTCGGGTGATTTAAAGTTGGGTTG TCTAACAATTTGCATGGTTAAAACATTATTTTTATGATTATATCTTAAACCAAAAGATCCTATGG AAGCACAATTGGAAGCAATATATGTTAGATCTACACCTGCTTGTA Found at i:703983 original size:1 final size:1 Alignment explanation
Indices: 703977--703992 Score: 25 Period size: 1 Copynumber: 16.0 Consensus size: 1 703967 TATATATATA * 703977 TTTTTTTTTTTATTTT 1 TTTTTTTTTTTTTTTT 703993 ATTAATTACA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.06, C:0.00, G:0.00, T:0.94 Consensus pattern (1 bp): T Left flanking sequence: Indices 703477 -- 703976 TATTTATATATTTATAATTTTTCAAATGAAAGTTTCATGTATTAAAAATTAATTATATTTTTTTT TTTGAAATGATTTTCCAAAGCAGGTGTTTATTAAGAGTATAGACAGGTGAAAAAAAAAATAACAA AATGAATAAATTAAAAAATAAAAAATAAAAAGGTTAAAAAATAAAAAAATAAAAAAATAAAAAAA TAAAAAATAAAAAAATAAAAAAATAAAAAATAAAAAATAAAAATATTTATAAATATACATATATA ATAATCATTCATTTGATTATTAGAAGCTTATATATAAAATTAATTATTAAAAAATATATACATAT TTATATATATATTTCAAAATTACAAATGTGTCAGTTTTGTATTAATGCCTTTAAAAAGGTATTAC ATATTTATTGGTATAAAATATATATGAACAATTTAAAGCTATGTAATTTATAAATATATTTATAT AATGCATATTATACCTTAACAATAATATATATATATATATATATA Right flanking sequence: Indices 703993 -- 704492 ATTAATTACACATACATATCACCTATTTGCGTCTATTTTTTATGCTGCTGTCTGTGGTTGCTCTT GTGAAGGAGATATGTGCATCATGAATCCAAACTTATAATCATTATTCAAATAATCTATATATCCA CTGACACCAAAACCTGAATAGTCTTGTGTGAAGACGGAAATTTTTCCACTGGTATCAATAGAGCC TTGTACTTTTGCATGTCTGAAAGAATAATCCCAACCAAGTCTCATAGCTGATTCTTTTGTTTGTG GTGTAATTTCTAATTCTGTTCCTAAGGATAAACGGTCTGATATTTTTTTGGCATATTGTATTTTA TATAAATGAGTTTGGTTTAACATAAACTCGGGTGATTTAAAGTTGGGTTGTCTAACAATTTGCAT GGTTAAAACATTATTTTTATGATTATATCTTAAACCAAAAGATCCTATGGAAGCACAATTGGAAG CAATATATGTTAGATCTACACCTGCTTGTAATTTCTTTGTTAATA Found at i:703993 original size:5 final size:5 Alignment explanation
Indices: 703979--703995 Score: 27 Period size: 5 Copynumber: 3.4 Consensus size: 5 703969 TATATATATT * 703979 TTTTT TTTTA TTTTA TT 1 TTTTA TTTTA TTTTA TT 703996 AATTACACAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88 Consensus pattern (5 bp): TTTTA Left flanking sequence: Indices 703479 -- 703978 TTTATATATTTATAATTTTTCAAATGAAAGTTTCATGTATTAAAAATTAATTATATTTTTTTTTT TGAAATGATTTTCCAAAGCAGGTGTTTATTAAGAGTATAGACAGGTGAAAAAAAAAATAACAAAA TGAATAAATTAAAAAATAAAAAATAAAAAGGTTAAAAAATAAAAAAATAAAAAAATAAAAAAATA AAAAATAAAAAAATAAAAAAATAAAAAATAAAAAATAAAAATATTTATAAATATACATATATAAT AATCATTCATTTGATTATTAGAAGCTTATATATAAAATTAATTATTAAAAAATATATACATATTT ATATATATATTTCAAAATTACAAATGTGTCAGTTTTGTATTAATGCCTTTAAAAAGGTATTACAT ATTTATTGGTATAAAATATATATGAACAATTTAAAGCTATGTAATTTATAAATATATTTATATAA TGCATATTATACCTTAACAATAATATATATATATATATATATATT Right flanking sequence: Indices 703996 -- 704495 AATTACACATACATATCACCTATTTGCGTCTATTTTTTATGCTGCTGTCTGTGGTTGCTCTTGTG AAGGAGATATGTGCATCATGAATCCAAACTTATAATCATTATTCAAATAATCTATATATCCACTG ACACCAAAACCTGAATAGTCTTGTGTGAAGACGGAAATTTTTCCACTGGTATCAATAGAGCCTTG TACTTTTGCATGTCTGAAAGAATAATCCCAACCAAGTCTCATAGCTGATTCTTTTGTTTGTGGTG TAATTTCTAATTCTGTTCCTAAGGATAAACGGTCTGATATTTTTTTGGCATATTGTATTTTATAT AAATGAGTTTGGTTTAACATAAACTCGGGTGATTTAAAGTTGGGTTGTCTAACAATTTGCATGGT TAAAACATTATTTTTATGATTATATCTTAAACCAAAAGATCCTATGGAAGCACAATTGGAAGCAA TATATGTTAGATCTACACCTGCTTGTAATTTCTTTGTTAATAATT Found at i:705250 original size:6 final size:6 Alignment explanation
Indices: 705224--705341 Score: 124 Period size: 6 Copynumber: 20.2 Consensus size: 6 705214 ATAAATGTAT * * * * * * * 705224 TATATG TAT-TA TATGTA TATATG TATATG TGTAAA TGTA-A TATATA 1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA * * * 705270 TATATA TATATA TATATA TATATA TATATA TATATA TATTTA TTTATT 1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA * * * 705318 TATTTA TTTAT- TATATG TATATA T 1 TATATA TATATA TATATA TATATA T 705342 TATTTTTTTC Statistics Matches: 91, Mismatches: 18, Indels: 6 0.79 0.16 0.05 Matches are distributed among these distances: 5 12 0.13 6 79 0.87 ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54 Consensus pattern (6 bp): TATATA Left flanking sequence: Indices 704724 -- 705223 CTAAATTAGTAAAATTTGCTCCAAATTGGTAAAGATAACCAACTTCCCTTAATGTTGTTCCTAGA AATAATGTATGTGTCGATTGTAAAAATTTATTTATATTTTTATCTACTTCAAAACGAAAACCATC AAAATTATCTTGAGTTGTTATAAATTTATATTCTTTATTTAAATTTTCAAATAATAAAGCATTAG GAGCATCAAAGGAATTTGCATATCCTAATAAATTTTGTTCTTTCAATTTATCTTCTTCACTTGTT TTTATGGTATCATCATTATTCTCTTTCACCATACTCTTATTTTTCATTTCATTATCAACTTCATT CTTTCTTTTTAAACCCTCTTCATTTGGGTCTTTAAAAACATCAAAAAAGGAATTATTTTCTGTAT GTACTACATTTTGTCTGCATAATAATTTCTTAAAAATGTTTGTTATCTCCATGCTATTTTTTCCT TTTTTTGTATCACAATCATATAAATTAATAAATGAATAAATGTAT Right flanking sequence: Indices 705342 -- 705841 TATTTTTTTCTCCTATACATCTTTATGCTTAAGGTTAACCCAAATTACACTTTCATATGTAATTC TCCTATACAAAAATGTTAACCCTTTATGCTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA TATATATATATATATATATATATTGTTTTATATAGAACACACATAAAAATATATATGTTTTACAT ATAAATATATATAATTATTATATTTCTTTATAAACAATATATATAAAAAAAATAACAAATTAATA AAAAACACAATATATTATATATATATATATACAAGCTTATTATTGAAAATATTAAAAAAAGAATT TTAAAATTTCATTTGTAGAAATTTTACACTTTCATATAATAACAATATAATAAATTTGTGTTGTA ACAAAATGTACGAGCTTGATGTAGAATTATATAAATACATATGTAATATATATATATATATAGAG AGAGAGAGAGTGATTTACTTTTTCCACATCTTTTAAAATTACAAA Found at i:705272 original size:4 final size:4 Alignment explanation
Indices: 705224--705341 Score: 124 Period size: 4 Copynumber: 30.2 Consensus size: 4 705214 ATAAATGTAT * * * * * * * 705224 TATA TGTA T-TA TATG TATA TATG TATA TGTG TAAA TGTA -ATA TATA 1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA * * * 705270 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATT TATT TATT 1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA * * * 705318 TATT TATT TAT- TATA TGTA TATA T 1 TATA TATA TATA TATA TATA TATA T 705342 TATTTTTTTC Statistics Matches: 95, Mismatches: 16, Indels: 6 0.81 0.14 0.05 Matches are distributed among these distances: 3 8 0.08 4 87 0.92 ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54 Consensus pattern (4 bp): TATA Left flanking sequence: Indices 704724 -- 705223 CTAAATTAGTAAAATTTGCTCCAAATTGGTAAAGATAACCAACTTCCCTTAATGTTGTTCCTAGA AATAATGTATGTGTCGATTGTAAAAATTTATTTATATTTTTATCTACTTCAAAACGAAAACCATC AAAATTATCTTGAGTTGTTATAAATTTATATTCTTTATTTAAATTTTCAAATAATAAAGCATTAG GAGCATCAAAGGAATTTGCATATCCTAATAAATTTTGTTCTTTCAATTTATCTTCTTCACTTGTT TTTATGGTATCATCATTATTCTCTTTCACCATACTCTTATTTTTCATTTCATTATCAACTTCATT CTTTCTTTTTAAACCCTCTTCATTTGGGTCTTTAAAAACATCAAAAAAGGAATTATTTTCTGTAT GTACTACATTTTGTCTGCATAATAATTTCTTAAAAATGTTTGTTATCTCCATGCTATTTTTTCCT TTTTTTGTATCACAATCATATAAATTAATAAATGAATAAATGTAT Right flanking sequence: Indices 705342 -- 705841 TATTTTTTTCTCCTATACATCTTTATGCTTAAGGTTAACCCAAATTACACTTTCATATGTAATTC TCCTATACAAAAATGTTAACCCTTTATGCTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA TATATATATATATATATATATATTGTTTTATATAGAACACACATAAAAATATATATGTTTTACAT ATAAATATATATAATTATTATATTTCTTTATAAACAATATATATAAAAAAAATAACAAATTAATA AAAAACACAATATATTATATATATATATATACAAGCTTATTATTGAAAATATTAAAAAAAGAATT TTAAAATTTCATTTGTAGAAATTTTACACTTTCATATAATAACAATATAATAAATTTGTGTTGTA ACAAAATGTACGAGCTTGATGTAGAATTATATAAATACATATGTAATATATATATATATATAGAG AGAGAGAGAGTGATTTACTTTTTCCACATCTTTTAAAATTACAAA Found at i:705448 original size:1 final size:1 Alignment explanation
Indices: 705444--705471 Score: 56 Period size: 1 Copynumber: 28.0 Consensus size: 1 705434 GCTTTTTTTT 705444 AAAAAAAAAAAAAAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA 705472 TATATATATA Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 27 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 704944 -- 705443 TAATAAATTTTGTTCTTTCAATTTATCTTCTTCACTTGTTTTTATGGTATCATCATTATTCTCTT TCACCATACTCTTATTTTTCATTTCATTATCAACTTCATTCTTTCTTTTTAAACCCTCTTCATTT GGGTCTTTAAAAACATCAAAAAAGGAATTATTTTCTGTATGTACTACATTTTGTCTGCATAATAA TTTCTTAAAAATGTTTGTTATCTCCATGCTATTTTTTCCTTTTTTTGTATCACAATCATATAAAT TAATAAATGAATAAATGTATTATATGTATTATATGTATATATGTATATGTGTAAATGTAATATAT ATATATATATATATATATATATATATATATATATATATATTTATTTATTTATTTATTTATTATAT GTATATATTATTTTTTTCTCCTATACATCTTTATGCTTAAGGTTAACCCAAATTACACTTTCATA TGTAATTCTCCTATACAAAAATGTTAACCCTTTATGCTTTTTTTT Right flanking sequence: Indices 705472 -- 705971 TATATATATATATATATATATATTGTTTTATATAGAACACACATAAAAATATATATGTTTTACAT ATAAATATATATAATTATTATATTTCTTTATAAACAATATATATAAAAAAAATAACAAATTAATA AAAAACACAATATATTATATATATATATATACAAGCTTATTATTGAAAATATTAAAAAAAGAATT TTAAAATTTCATTTGTAGAAATTTTACACTTTCATATAATAACAATATAATAAATTTGTGTTGTA ACAAAATGTACGAGCTTGATGTAGAATTATATAAATACATATGTAATATATATATATATATAGAG AGAGAGAGAGTGATTTACTTTTTCCACATCTTTTAAAATTACAAAAATTTAAAAACAAATAAAAA ACAATACGTTTTAAATAAAAATTAAATTGTTAAAAAGAAATTTTAAACTTAGGTGTTCATAGAGT ACAAATAAAAAAATAAGAAAAAATAAATAAATAATTATAAATAAA Found at i:705505 original size:2 final size:2 Alignment explanation
Indices: 705471--705494 Score: 48 Period size: 2 Copynumber: 12.0 Consensus size: 2 705461 AAAAAAAAAA 705471 AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT 705495 TGTTTTATAT Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 22 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 704971 -- 705470 TTCTTCACTTGTTTTTATGGTATCATCATTATTCTCTTTCACCATACTCTTATTTTTCATTTCAT TATCAACTTCATTCTTTCTTTTTAAACCCTCTTCATTTGGGTCTTTAAAAACATCAAAAAAGGAA TTATTTTCTGTATGTACTACATTTTGTCTGCATAATAATTTCTTAAAAATGTTTGTTATCTCCAT GCTATTTTTTCCTTTTTTTGTATCACAATCATATAAATTAATAAATGAATAAATGTATTATATGT ATTATATGTATATATGTATATGTGTAAATGTAATATATATATATATATATATATATATATATATA TATATATATATATTTATTTATTTATTTATTTATTATATGTATATATTATTTTTTTCTCCTATACA TCTTTATGCTTAAGGTTAACCCAAATTACACTTTCATATGTAATTCTCCTATACAAAAATGTTAA CCCTTTATGCTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA Right flanking sequence: Indices 705495 -- 705994 TGTTTTATATAGAACACACATAAAAATATATATGTTTTACATATAAATATATATAATTATTATAT TTCTTTATAAACAATATATATAAAAAAAATAACAAATTAATAAAAAACACAATATATTATATATA TATATATACAAGCTTATTATTGAAAATATTAAAAAAAGAATTTTAAAATTTCATTTGTAGAAATT TTACACTTTCATATAATAACAATATAATAAATTTGTGTTGTAACAAAATGTACGAGCTTGATGTA GAATTATATAAATACATATGTAATATATATATATATATAGAGAGAGAGAGAGTGATTTACTTTTT CCACATCTTTTAAAATTACAAAAATTTAAAAACAAATAAAAAACAATACGTTTTAAATAAAAATT AAATTGTTAAAAAGAAATTTTAAACTTAGGTGTTCATAGAGTACAAATAAAAAAATAAGAAAAAA TAAATAAATAATTATAAATAAATCTATACATATATATATATATAT Found at i:705616 original size:2 final size:2 Alignment explanation
Indices: 705611--705632 Score: 37 Period size: 2 Copynumber: 11.5 Consensus size: 2 705601 AAAAAACACA 705611 AT AT AT -T AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT A 705633 CAAGCTTATT Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 1 1 0.05 2 18 0.95 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 705111 -- 705610 TATGTACTACATTTTGTCTGCATAATAATTTCTTAAAAATGTTTGTTATCTCCATGCTATTTTTT CCTTTTTTTGTATCACAATCATATAAATTAATAAATGAATAAATGTATTATATGTATTATATGTA TATATGTATATGTGTAAATGTAATATATATATATATATATATATATATATATATATATATATATA TATTTATTTATTTATTTATTTATTATATGTATATATTATTTTTTTCTCCTATACATCTTTATGCT TAAGGTTAACCCAAATTACACTTTCATATGTAATTCTCCTATACAAAAATGTTAACCCTTTATGC TTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATTGTTTT ATATAGAACACACATAAAAATATATATGTTTTACATATAAATATATATAATTATTATATTTCTTT ATAAACAATATATATAAAAAAAATAACAAATTAATAAAAAACACA Right flanking sequence: Indices 705633 -- 706132 CAAGCTTATTATTGAAAATATTAAAAAAAGAATTTTAAAATTTCATTTGTAGAAATTTTACACTT TCATATAATAACAATATAATAAATTTGTGTTGTAACAAAATGTACGAGCTTGATGTAGAATTATA TAAATACATATGTAATATATATATATATATAGAGAGAGAGAGAGTGATTTACTTTTTCCACATCT TTTAAAATTACAAAAATTTAAAAACAAATAAAAAACAATACGTTTTAAATAAAAATTAAATTGTT AAAAAGAAATTTTAAACTTAGGTGTTCATAGAGTACAAATAAAAAAATAAGAAAAAATAAATAAA TAATTATAAATAAATCTATACATATATATATATATATATATATATATATATATATATATATATAT ATATGTATATAATTAAGGATTTGCTTTTTTTTTTTTTAAATTATACGCATAAATATAATAAAATT ATAATGTAGTAGAAAATTACATATATTTTTTTATTCTTTTTTAAG Found at i:705782 original size:2 final size:2 Alignment explanation
Indices: 705759--705793 Score: 42 Period size: 2 Copynumber: 18.0 Consensus size: 2 705749 GATGTAGAAT * * * 705759 TA TA TA AA TA CA TA TG TA -A TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 705794 GAGAGAGAGA Statistics Matches: 26, Mismatches: 6, Indels: 2 0.76 0.18 0.06 Matches are distributed among these distances: 1 1 0.04 2 25 0.96 ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43 Consensus pattern (2 bp): TA Left flanking sequence: Indices 705259 -- 705758 TGTAATATATATATATATATATATATATATATATATATATATATATATATTTATTTATTTATTTA TTTATTATATGTATATATTATTTTTTTCTCCTATACATCTTTATGCTTAAGGTTAACCCAAATTA CACTTTCATATGTAATTCTCCTATACAAAAATGTTAACCCTTTATGCTTTTTTTTAAAAAAAAAA AAAAAAAAAAAAAAAAAATATATATATATATATATATATATTGTTTTATATAGAACACACATAAA AATATATATGTTTTACATATAAATATATATAATTATTATATTTCTTTATAAACAATATATATAAA AAAAATAACAAATTAATAAAAAACACAATATATTATATATATATATATACAAGCTTATTATTGAA AATATTAAAAAAAGAATTTTAAAATTTCATTTGTAGAAATTTTACACTTTCATATAATAACAATA TAATAAATTTGTGTTGTAACAAAATGTACGAGCTTGATGTAGAAT Right flanking sequence: Indices 705794 -- 706293 GAGAGAGAGAGAGTGATTTACTTTTTCCACATCTTTTAAAATTACAAAAATTTAAAAACAAATAA AAAACAATACGTTTTAAATAAAAATTAAATTGTTAAAAAGAAATTTTAAACTTAGGTGTTCATAG AGTACAAATAAAAAAATAAGAAAAAATAAATAAATAATTATAAATAAATCTATACATATATATAT ATATATATATATATATATATATATATATATATATATATGTATATAATTAAGGATTTGCTTTTTTT TTTTTTAAATTATACGCATAAATATAATAAAATTATAATGTAGTAGAAAATTACATATATTTTTT TATTCTTTTTTAAGTATGCTATAAAAAAAATGAATATATATATATAATATATATTATATATAAAT ATATAATCATTAACATTTTATATACAATTATTTGTAAGAGAATTTTTTTACCCTTTTTTGCTTTT TTTTTTTTTTTTTTCTCCAACGCCCCAATTTTTCTTATATGCATA Found at i:705798 original size:2 final size:2 Alignment explanation
Indices: 705793--705806 Score: 28 Period size: 2 Copynumber: 7.0 Consensus size: 2 705783 ATATATATAT 705793 AG AG AG AG AG AG AG 1 AG AG AG AG AG AG AG 705807 TGATTTACTT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 12 1.00 ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00 Consensus pattern (2 bp): AG Left flanking sequence: Indices 705293 -- 705792 ATATATATATATATATTTATTTATTTATTTATTTATTATATGTATATATTATTTTTTTCTCCTAT ACATCTTTATGCTTAAGGTTAACCCAAATTACACTTTCATATGTAATTCTCCTATACAAAAATGT TAACCCTTTATGCTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATA TATATATTGTTTTATATAGAACACACATAAAAATATATATGTTTTACATATAAATATATATAATT ATTATATTTCTTTATAAACAATATATATAAAAAAAATAACAAATTAATAAAAAACACAATATATT ATATATATATATATACAAGCTTATTATTGAAAATATTAAAAAAAGAATTTTAAAATTTCATTTGT AGAAATTTTACACTTTCATATAATAACAATATAATAAATTTGTGTTGTAACAAAATGTACGAGCT TGATGTAGAATTATATAAATACATATGTAATATATATATATATAT Right flanking sequence: Indices 705807 -- 706306 TGATTTACTTTTTCCACATCTTTTAAAATTACAAAAATTTAAAAACAAATAAAAAACAATACGTT TTAAATAAAAATTAAATTGTTAAAAAGAAATTTTAAACTTAGGTGTTCATAGAGTACAAATAAAA AAATAAGAAAAAATAAATAAATAATTATAAATAAATCTATACATATATATATATATATATATATA TATATATATATATATATATATATATGTATATAATTAAGGATTTGCTTTTTTTTTTTTTAAATTAT ACGCATAAATATAATAAAATTATAATGTAGTAGAAAATTACATATATTTTTTTATTCTTTTTTAA GTATGCTATAAAAAAAATGAATATATATATATAATATATATTATATATAAATATATAATCATTAA CATTTTATATACAATTATTTGTAAGAGAATTTTTTTACCCTTTTTTGCTTTTTTTTTTTTTTTTT TCTCCAACGCCCCAATTTTTCTTATATGCATATATATATTATATA Found at i:705970 original size:4 final size:4 Alignment explanation
Indices: 705962--706033 Score: 109 Period size: 4 Copynumber: 18.0 Consensus size: 4 705952 AATAAATAAT * * * * 705962 TATA AATA AATC TATA CATA TATA TATA TATA TATA TATA TATA TATA 1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA * 706010 TATA TATA TATA TATA TGTA TATA 1 TATA TATA TATA TATA TATA TATA 706034 ATTAAGGATT Statistics Matches: 60, Mismatches: 8, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 4 60 1.00 ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46 Consensus pattern (4 bp): TATA Left flanking sequence: Indices 705462 -- 705961 AAAAAAAAAATATATATATATATATATATATATTGTTTTATATAGAACACACATAAAAATATATA TGTTTTACATATAAATATATATAATTATTATATTTCTTTATAAACAATATATATAAAAAAAATAA CAAATTAATAAAAAACACAATATATTATATATATATATATACAAGCTTATTATTGAAAATATTAA AAAAAGAATTTTAAAATTTCATTTGTAGAAATTTTACACTTTCATATAATAACAATATAATAAAT TTGTGTTGTAACAAAATGTACGAGCTTGATGTAGAATTATATAAATACATATGTAATATATATAT ATATATAGAGAGAGAGAGAGTGATTTACTTTTTCCACATCTTTTAAAATTACAAAAATTTAAAAA CAAATAAAAAACAATACGTTTTAAATAAAAATTAAATTGTTAAAAAGAAATTTTAAACTTAGGTG TTCATAGAGTACAAATAAAAAAATAAGAAAAAATAAATAAATAAT Right flanking sequence: Indices 706034 -- 706533 ATTAAGGATTTGCTTTTTTTTTTTTTAAATTATACGCATAAATATAATAAAATTATAATGTAGTA GAAAATTACATATATTTTTTTATTCTTTTTTAAGTATGCTATAAAAAAAATGAATATATATATAT AATATATATTATATATAAATATATAATCATTAACATTTTATATACAATTATTTGTAAGAGAATTT TTTTACCCTTTTTTGCTTTTTTTTTTTTTTTTTTCTCCAACGCCCCAATTTTTCTTATATGCATA TATATATTATATATATATATATATATATATATATAATATAATAACTTTTTTTTTTTTTCTTTTTT TTTTTTTACCCATATTAATATAGTACTTATAGAAAAAAAGTATACCTTATAAAATATTGATGTTA TTTAATTTGTATATAATAATATATTTATTAAAATATATAATAAGTTAAAAAAAAAAAAAAAATAT ATATATTAAAGTATATTTTATAATATATATAAAAAAATTTGATGT Found at i:705983 original size:6 final size:6 Alignment explanation
Indices: 705962--706033 Score: 109 Period size: 6 Copynumber: 12.0 Consensus size: 6 705952 AATAAATAAT * * * * 705962 TATAAA TAAATC TATACA TATATA TATATA TATATA TATATA TATATA 1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA * 706010 TATATA TATATA TATATG TATATA 1 TATATA TATATA TATATA TATATA 706034 ATTAAGGATT Statistics Matches: 57, Mismatches: 9, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 6 57 1.00 ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46 Consensus pattern (6 bp): TATATA Left flanking sequence: Indices 705462 -- 705961 AAAAAAAAAATATATATATATATATATATATATTGTTTTATATAGAACACACATAAAAATATATA TGTTTTACATATAAATATATATAATTATTATATTTCTTTATAAACAATATATATAAAAAAAATAA CAAATTAATAAAAAACACAATATATTATATATATATATATACAAGCTTATTATTGAAAATATTAA AAAAAGAATTTTAAAATTTCATTTGTAGAAATTTTACACTTTCATATAATAACAATATAATAAAT TTGTGTTGTAACAAAATGTACGAGCTTGATGTAGAATTATATAAATACATATGTAATATATATAT ATATATAGAGAGAGAGAGAGTGATTTACTTTTTCCACATCTTTTAAAATTACAAAAATTTAAAAA CAAATAAAAAACAATACGTTTTAAATAAAAATTAAATTGTTAAAAAGAAATTTTAAACTTAGGTG TTCATAGAGTACAAATAAAAAAATAAGAAAAAATAAATAAATAAT Right flanking sequence: Indices 706034 -- 706533 ATTAAGGATTTGCTTTTTTTTTTTTTAAATTATACGCATAAATATAATAAAATTATAATGTAGTA GAAAATTACATATATTTTTTTATTCTTTTTTAAGTATGCTATAAAAAAAATGAATATATATATAT AATATATATTATATATAAATATATAATCATTAACATTTTATATACAATTATTTGTAAGAGAATTT TTTTACCCTTTTTTGCTTTTTTTTTTTTTTTTTTCTCCAACGCCCCAATTTTTCTTATATGCATA TATATATTATATATATATATATATATATATATATAATATAATAACTTTTTTTTTTTTTCTTTTTT TTTTTTTACCCATATTAATATAGTACTTATAGAAAAAAAGTATACCTTATAAAATATTGATGTTA TTTAATTTGTATATAATAATATATTTATTAAAATATATAATAAGTTAAAAAAAAAAAAAAAATAT ATATATTAAAGTATATTTTATAATATATATAAAAAAATTTGATGT Found at i:706053 original size:1 final size:1 Alignment explanation
Indices: 706047--706059 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 706037 AAGGATTTGC 706047 TTTTTTTTTTTTT 1 TTTTTTTTTTTTT 706060 AAATTATACG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 705547 -- 706046 ATAATTATTATATTTCTTTATAAACAATATATATAAAAAAAATAACAAATTAATAAAAAACACAA TATATTATATATATATATATACAAGCTTATTATTGAAAATATTAAAAAAAGAATTTTAAAATTTC ATTTGTAGAAATTTTACACTTTCATATAATAACAATATAATAAATTTGTGTTGTAACAAAATGTA CGAGCTTGATGTAGAATTATATAAATACATATGTAATATATATATATATATAGAGAGAGAGAGAG TGATTTACTTTTTCCACATCTTTTAAAATTACAAAAATTTAAAAACAAATAAAAAACAATACGTT TTAAATAAAAATTAAATTGTTAAAAAGAAATTTTAAACTTAGGTGTTCATAGAGTACAAATAAAA AAATAAGAAAAAATAAATAAATAATTATAAATAAATCTATACATATATATATATATATATATATA TATATATATATATATATATATATATGTATATAATTAAGGATTTGC Right flanking sequence: Indices 706060 -- 706559 AAATTATACGCATAAATATAATAAAATTATAATGTAGTAGAAAATTACATATATTTTTTTATTCT TTTTTAAGTATGCTATAAAAAAAATGAATATATATATATAATATATATTATATATAAATATATAA TCATTAACATTTTATATACAATTATTTGTAAGAGAATTTTTTTACCCTTTTTTGCTTTTTTTTTT TTTTTTTTCTCCAACGCCCCAATTTTTCTTATATGCATATATATATTATATATATATATATATAT ATATATATAATATAATAACTTTTTTTTTTTTTCTTTTTTTTTTTTTACCCATATTAATATAGTAC TTATAGAAAAAAAGTATACCTTATAAAATATTGATGTTATTTAATTTGTATATAATAATATATTT ATTAAAATATATAATAAGTTAAAAAAAAAAAAAAAATATATATATTAAAGTATATTTTATAATAT ATATAAAAAAATTTGATGTTTTTTTATAATACCTATATTTTATAA Found at i:706207 original size:2 final size:2 Alignment explanation
Indices: 706152--706188 Score: 53 Period size: 2 Copynumber: 19.5 Consensus size: 2 706142 AAAAAAATGA * 706152 AT AT AT AT AT AT A- AT AT AT AT -T AT AT AT AA AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 706189 ATCATTAACA Statistics Matches: 31, Mismatches: 2, Indels: 4 0.84 0.05 0.11 Matches are distributed among these distances: 1 2 0.06 2 29 0.94 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (2 bp): AT Left flanking sequence: Indices 705652 -- 706151 ATTAAAAAAAGAATTTTAAAATTTCATTTGTAGAAATTTTACACTTTCATATAATAACAATATAA TAAATTTGTGTTGTAACAAAATGTACGAGCTTGATGTAGAATTATATAAATACATATGTAATATA TATATATATATAGAGAGAGAGAGAGTGATTTACTTTTTCCACATCTTTTAAAATTACAAAAATTT AAAAACAAATAAAAAACAATACGTTTTAAATAAAAATTAAATTGTTAAAAAGAAATTTTAAACTT AGGTGTTCATAGAGTACAAATAAAAAAATAAGAAAAAATAAATAAATAATTATAAATAAATCTAT ACATATATATATATATATATATATATATATATATATATATATATATATATGTATATAATTAAGGA TTTGCTTTTTTTTTTTTTAAATTATACGCATAAATATAATAAAATTATAATGTAGTAGAAAATTA CATATATTTTTTTATTCTTTTTTAAGTATGCTATAAAAAAAATGA Right flanking sequence: Indices 706189 -- 706688 ATCATTAACATTTTATATACAATTATTTGTAAGAGAATTTTTTTACCCTTTTTTGCTTTTTTTTT TTTTTTTTTCTCCAACGCCCCAATTTTTCTTATATGCATATATATATTATATATATATATATATA TATATATATAATATAATAACTTTTTTTTTTTTTCTTTTTTTTTTTTTACCCATATTAATATAGTA CTTATAGAAAAAAAGTATACCTTATAAAATATTGATGTTATTTAATTTGTATATAATAATATATT TATTAAAATATATAATAAGTTAAAAAAAAAAAAAAAATATATATATTAAAGTATATTTTATAATA TATATAAAAAAATTTGATGTTTTTTTATAATACCTATATTTTATAATTATTTATTTTTTAAAGTA TGAAGTATATATTTATAAATATTATTATTATATATTTTTTTTTATATTTGTAGAAAAAATAGCTT TCATTTTTTTTAACCATATCAAAAATTTCAAATATTCACTTTTGT Found at i:706281 original size:1 final size:1 Alignment explanation
Indices: 706237--706262 Score: 38 Period size: 1 Copynumber: 26.0 Consensus size: 1 706227 TTTTTTACCC ** 706237 TTTTTTGCTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTT 706263 CTCCAACGCC Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 1 22 1.00 ACGTcount: A:0.00, C:0.04, G:0.04, T:0.92 Consensus pattern (1 bp): T Left flanking sequence: Indices 705737 -- 706236 ATGTACGAGCTTGATGTAGAATTATATAAATACATATGTAATATATATATATATATAGAGAGAGA GAGAGTGATTTACTTTTTCCACATCTTTTAAAATTACAAAAATTTAAAAACAAATAAAAAACAAT ACGTTTTAAATAAAAATTAAATTGTTAAAAAGAAATTTTAAACTTAGGTGTTCATAGAGTACAAA TAAAAAAATAAGAAAAAATAAATAAATAATTATAAATAAATCTATACATATATATATATATATAT ATATATATATATATATATATATATATATATGTATATAATTAAGGATTTGCTTTTTTTTTTTTTAA ATTATACGCATAAATATAATAAAATTATAATGTAGTAGAAAATTACATATATTTTTTTATTCTTT TTTAAGTATGCTATAAAAAAAATGAATATATATATATAATATATATTATATATAAATATATAATC ATTAACATTTTATATACAATTATTTGTAAGAGAATTTTTTTACCC Right flanking sequence: Indices 706263 -- 706762 CTCCAACGCCCCAATTTTTCTTATATGCATATATATATTATATATATATATATATATATATATAT AATATAATAACTTTTTTTTTTTTTCTTTTTTTTTTTTTACCCATATTAATATAGTACTTATAGAA AAAAAGTATACCTTATAAAATATTGATGTTATTTAATTTGTATATAATAATATATTTATTAAAAT ATATAATAAGTTAAAAAAAAAAAAAAAATATATATATTAAAGTATATTTTATAATATATATAAAA AAATTTGATGTTTTTTTATAATACCTATATTTTATAATTATTTATTTTTTAAAGTATGAAGTATA TATTTATAAATATTATTATTATATATTTTTTTTTATATTTGTAGAAAAAATAGCTTTCATTTTTT TTAACCATATCAAAAATTTCAAATATTCACTTTTGTATAAAAATATAACATTATATTGTACTACA TTAATAAAAAAAATGTAGTGTTAATTTATTTTTTTTAGTATTAAT Found at