TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739984 P. falciparum 3D7 GENOMIC chr10 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1694445 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Warning! 85 characters in sequence are not A, C, G, or T Found at i: i:1018231 original size:5 final size:5 Alignment explanation
Indices: 1018173--1018276 Score: 73 Period size: 5 Copynumber: 21.8 Consensus size: 5 1018163 TAAAACATAG * * 1018173 AAACA AAA-A AAAAA AAATA AAAT- AAAT- AAAT- AAATA AAA-A AAATA 1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA * * * * * * * * * 1018218 GAATA AAATA AAATT ATATC ATATT ATATC AAATA AAATA AAA-C AAATA 1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA * 1018267 ACAACA AAAT 1 A-AATA AAAT 1018277 TATCATAATG Statistics Matches: 80, Mismatches: 14, Indels: 10 0.77 0.13 0.10 Matches are distributed among these distances: 4 23 0.29 5 53 0.66 6 4 0.05 ACGTcount: A:0.73, C:0.06, G:0.01, T:0.20 Consensus pattern (5 bp): AAATA Left flanking sequence: Indices 1017673 -- 1018172 TAGAGATTTTAATTTTTTATTTTTTTTAACAAACATTTTTTCAATTAAACATGACCTTCCTTATT TTTGTAATGCTGTTAAAGATGTCAATAATTCTGTAGATATACCAGACCATTATTTGCACATTTTA CAAAATCTATCCAATAACGCAAACATGTTAAATTAAAATATAATACATATATATATATATATATA TATATATATAGATAGATAGATATATAGATAATATTTATATTTAATGTATGGGTTTATTGTGTTTC TTTTATTTATTCATTTTACTTTTCTTATAATTCTCAAAACTGATGTTCCATTTTGTTTTCTTTTT TTTACGTTACACAAAAATATGTACATATATACATATATATATATATATATATATATATATATTTA TTTATTTATGTTCTTATAATTTTTTGGAAAATTAAAAATTAAAATTTAAAAATTAATATATAGGT TTATTTATAAGCCCTATTTATAATTTGTTTAATTATAAAACATAG Right flanking sequence: Indices 1018277 -- 1018776 TATCATAATGATAAATATTATAATTTTAATGATGGTGTTATTGTTATATTATACCTTATTAGTTA AAATTGTGGAAAATATAACGAAGAAACAAAAAAAGAAAAAAGAGGGATACACACAAACATATATA TATATATATATATATATATGTATACTTAATATATGTTTATTTAGAAATTAAAGTACCGACTGCTT CACTTATCCTCAAAGGGTAGCTTGCTTTATCATTAAGTAGTAATTCCCGATTTAATGTTACATTC CAATGTTTTTGTTTAGTCATAGGAAAGTTGTATGAAGGAGCATGCTCCTTGTAAGTACTCATAAC ATTTTGTTTATCATGTATACAACAAGAATTTAATATTGTACACATAATTTTGTTTGTTATAATAT TAATCTTTCTCAAGGGAATATAAGAAGAAACTTCATTATTATAATAGTGGGAATAATTATTATAA ATATTATCATTACTGGTTAAGGAATGATATATATGACAACAATTC Found at i:1018440 original size:2 final size:2 Alignment explanation
Indices: 1018400--1018430 Score: 55 Period size: 2 Copynumber: 15.5 Consensus size: 2 1018390 ACACACAAAC * 1018400 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1018431 CTTAATATAT Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 2 27 1.00 ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48 Consensus pattern (2 bp): AT Left flanking sequence: Indices 1017900 -- 1018399 ATTTATATTTAATGTATGGGTTTATTGTGTTTCTTTTATTTATTCATTTTACTTTTCTTATAATT CTCAAAACTGATGTTCCATTTTGTTTTCTTTTTTTTACGTTACACAAAAATATGTACATATATAC ATATATATATATATATATATATATATATATTTATTTATTTATGTTCTTATAATTTTTTGGAAAAT TAAAAATTAAAATTTAAAAATTAATATATAGGTTTATTTATAAGCCCTATTTATAATTTGTTTAA TTATAAAACATAGAAACAAAAAAAAAAAAATAAAATAAATAAATAAATAAAAAAAATAGAATAAA ATAAAATTATATCATATTATATCAAATAAAATAAAACAAATAACAACAAAATTATCATAATGATA AATATTATAATTTTAATGATGGTGTTATTGTTATATTATACCTTATTAGTTAAAATTGTGGAAAA TATAACGAAGAAACAAAAAAAGAAAAAAGAGGGATACACACAAAC Right flanking sequence: Indices 1018431 -- 1018930 CTTAATATATGTTTATTTAGAAATTAAAGTACCGACTGCTTCACTTATCCTCAAAGGGTAGCTTG CTTTATCATTAAGTAGTAATTCCCGATTTAATGTTACATTCCAATGTTTTTGTTTAGTCATAGGA AAGTTGTATGAAGGAGCATGCTCCTTGTAAGTACTCATAACATTTTGTTTATCATGTATACAACA AGAATTTAATATTGTACACATAATTTTGTTTGTTATAATATTAATCTTTCTCAAGGGAATATAAG AAGAAACTTCATTATTATAATAGTGGGAATAATTATTATAAATATTATCATTACTGGTTAAGGAA TGATATATATGACAACAATTCATTTGATCATCATCATTATTATTATTATTACTACTAGTAGTAGT AGTAGTAGTATTAGTAGTAGTAATAAAATTATTGATATTCTTCATTTTTCTTTTATGTGTTGTTT GGTTTTCTTTATTTTTTTCCATTTGTTTCATTTTTTCTCTTAACA Found at i:1018797 original size:3 final size:3 Alignment explanation
Indices: 1018791--1018806 Score: 32 Period size: 3 Copynumber: 5.3 Consensus size: 3 1018781 GATCATCATC 1018791 ATT ATT ATT ATT ATT A 1 ATT ATT ATT ATT ATT A 1018807 CTACTAGTAG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 13 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (3 bp): ATT Left flanking sequence: Indices 1018291 -- 1018790 ATATTATAATTTTAATGATGGTGTTATTGTTATATTATACCTTATTAGTTAAAATTGTGGAAAAT ATAACGAAGAAACAAAAAAAGAAAAAAGAGGGATACACACAAACATATATATATATATATATATA TATATGTATACTTAATATATGTTTATTTAGAAATTAAAGTACCGACTGCTTCACTTATCCTCAAA GGGTAGCTTGCTTTATCATTAAGTAGTAATTCCCGATTTAATGTTACATTCCAATGTTTTTGTTT AGTCATAGGAAAGTTGTATGAAGGAGCATGCTCCTTGTAAGTACTCATAACATTTTGTTTATCAT GTATACAACAAGAATTTAATATTGTACACATAATTTTGTTTGTTATAATATTAATCTTTCTCAAG GGAATATAAGAAGAAACTTCATTATTATAATAGTGGGAATAATTATTATAAATATTATCATTACT GGTTAAGGAATGATATATATGACAACAATTCATTTGATCATCATC Right flanking sequence: Indices 1018807 -- 1019306 CTACTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAATAAAATTATTGATATTCTTCATTTTTCT TTTATGTGTTGTTTGGTTTTCTTTATTTTTTTCCATTTGTTTCATTTTTTCTCTTAACATAAGTA ATTTATTCTGATCTGTCCACTGTCGAAGTTTTTGAAAAACCTGATATTCATTGCAAACATAACTA TGAGGAGAATTATAAAATAATATACTGTAGATTTTTTGTTTTTCATAATCGTCATTATATAATAT ATCATTATTTAAAAATGTATTATAAAATATATTTTTCTTATTATCATTATAATAATAATTATTAT AATTTTTGGTAATATTATTTTTTATGGTATTATTTTCTTGGTTGATACGTTTTTGTATTTCTTGT TTTTTTTTTATACGCGATATAAAACTACTACTATGATCATCTCTTTCAAAACATTTTGTTATATT TTCCATATTTATCTCCTTTTTCATTTTACTAATTATTTTATCAAA Found at i:1018817 original size:3 final size:3 Alignment explanation
Indices: 1018811--1018842 Score: 57 Period size: 3 Copynumber: 10.7 Consensus size: 3 1018801 TTATTACTAC * 1018811 TAG TAG TAG TAG TAG TAG TAT TAG TAG TAG TA 1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA 1018843 ATAAAATTAT Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 3 27 1.00 ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38 Consensus pattern (3 bp): TAG Left flanking sequence: Indices 1018311 -- 1018810 GTGTTATTGTTATATTATACCTTATTAGTTAAAATTGTGGAAAATATAACGAAGAAACAAAAAAA GAAAAAAGAGGGATACACACAAACATATATATATATATATATATATATATGTATACTTAATATAT GTTTATTTAGAAATTAAAGTACCGACTGCTTCACTTATCCTCAAAGGGTAGCTTGCTTTATCATT AAGTAGTAATTCCCGATTTAATGTTACATTCCAATGTTTTTGTTTAGTCATAGGAAAGTTGTATG AAGGAGCATGCTCCTTGTAAGTACTCATAACATTTTGTTTATCATGTATACAACAAGAATTTAAT ATTGTACACATAATTTTGTTTGTTATAATATTAATCTTTCTCAAGGGAATATAAGAAGAAACTTC ATTATTATAATAGTGGGAATAATTATTATAAATATTATCATTACTGGTTAAGGAATGATATATAT GACAACAATTCATTTGATCATCATCATTATTATTATTATTACTAC Right flanking sequence: Indices 1018843 -- 1019342 ATAAAATTATTGATATTCTTCATTTTTCTTTTATGTGTTGTTTGGTTTTCTTTATTTTTTTCCAT TTGTTTCATTTTTTCTCTTAACATAAGTAATTTATTCTGATCTGTCCACTGTCGAAGTTTTTGAA AAACCTGATATTCATTGCAAACATAACTATGAGGAGAATTATAAAATAATATACTGTAGATTTTT TGTTTTTCATAATCGTCATTATATAATATATCATTATTTAAAAATGTATTATAAAATATATTTTT CTTATTATCATTATAATAATAATTATTATAATTTTTGGTAATATTATTTTTTATGGTATTATTTT CTTGGTTGATACGTTTTTGTATTTCTTGTTTTTTTTTTATACGCGATATAAAACTACTACTATGA TCATCTCTTTCAAAACATTTTGTTATATTTTCCATATTTATCTCCTTTTTCATTTTACTAATTAT TTTATCAAATATGTGTATAATCAATTTAATACATTCCATTTCAAA Found at i:1019165 original size:3 final size:3 Alignment explanation
Indices: 1019096--1019150 Score: 33 Period size: 3 Copynumber: 18.3 Consensus size: 3 1019086 TTATAAAATA * * * * * * * * ** * 1019096 TAT TTT TCT TAT TAT CAT TAT AAT AAT AAT TAT TAT AAT TTT TGG TAA 1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT 1019144 TAT TAT T 1 TAT TAT T 1019151 TTTTATGGTA Statistics Matches: 37, Mismatches: 15, Indels: 0 0.71 0.29 0.00 Matches are distributed among these distances: 3 37 1.00 ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58 Consensus pattern (3 bp): TAT Left flanking sequence: Indices 1018596 -- 1019095 CATAACATTTTGTTTATCATGTATACAACAAGAATTTAATATTGTACACATAATTTTGTTTGTTA TAATATTAATCTTTCTCAAGGGAATATAAGAAGAAACTTCATTATTATAATAGTGGGAATAATTA TTATAAATATTATCATTACTGGTTAAGGAATGATATATATGACAACAATTCATTTGATCATCATC ATTATTATTATTATTACTACTAGTAGTAGTAGTAGTAGTATTAGTAGTAGTAATAAAATTATTGA TATTCTTCATTTTTCTTTTATGTGTTGTTTGGTTTTCTTTATTTTTTTCCATTTGTTTCATTTTT TCTCTTAACATAAGTAATTTATTCTGATCTGTCCACTGTCGAAGTTTTTGAAAAACCTGATATTC ATTGCAAACATAACTATGAGGAGAATTATAAAATAATATACTGTAGATTTTTTGTTTTTCATAAT CGTCATTATATAATATATCATTATTTAAAAATGTATTATAAAATA Right flanking sequence: Indices 1019151 -- 1019650 TTTTATGGTATTATTTTCTTGGTTGATACGTTTTTGTATTTCTTGTTTTTTTTTTATACGCGATA TAAAACTACTACTATGATCATCTCTTTCAAAACATTTTGTTATATTTTCCATATTTATCTCCTTT TTCATTTTACTAATTATTTTATCAAATATGTGTATAATCAATTTAATACATTCCATTTCAAAATA TTCACATTTAAATAATTTTTTCAGTGGCCTAATAACATTTGTACTGTTTTTCATTTTTTCTTTTT TATTTTTTTTAACATAAGAATCAAAAAAAAACAAAATGTCATGACAGTTATCTTCTAAATTTTTA TTTGAAGAAAAAACATTTATTATATCAATATTAAATTTTTTTTCTTTTATATCTAATAATACTAT ATTATCACCTTCGAAAAAGGGATAACATGTCTTATGATTTTTATTATATTTATTAATATCTTCAT TTTTATTCTTATCCTCTTCTCTCATTTCTATATATTTCTTTAATA Found at i:1019403 original size:1 final size:1 Alignment explanation
Indices: 1019399--1019420 Score: 30 Period size: 1 Copynumber: 22.0 Consensus size: 1 1019389 CTGTTTTTCA * * 1019399 TTTTTTCTTTTTTATTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTT 1019421 AACATAAGAA Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 1 17 1.00 ACGTcount: A:0.05, C:0.05, G:0.00, T:0.91 Consensus pattern (1 bp): T Left flanking sequence: Indices 1018899 -- 1019398 TTTTTCCATTTGTTTCATTTTTTCTCTTAACATAAGTAATTTATTCTGATCTGTCCACTGTCGAA GTTTTTGAAAAACCTGATATTCATTGCAAACATAACTATGAGGAGAATTATAAAATAATATACTG TAGATTTTTTGTTTTTCATAATCGTCATTATATAATATATCATTATTTAAAAATGTATTATAAAA TATATTTTTCTTATTATCATTATAATAATAATTATTATAATTTTTGGTAATATTATTTTTTATGG TATTATTTTCTTGGTTGATACGTTTTTGTATTTCTTGTTTTTTTTTTATACGCGATATAAAACTA CTACTATGATCATCTCTTTCAAAACATTTTGTTATATTTTCCATATTTATCTCCTTTTTCATTTT ACTAATTATTTTATCAAATATGTGTATAATCAATTTAATACATTCCATTTCAAAATATTCACATT TAAATAATTTTTTCAGTGGCCTAATAACATTTGTACTGTTTTTCA Right flanking sequence: Indices 1019421 -- 1019920 AACATAAGAATCAAAAAAAAACAAAATGTCATGACAGTTATCTTCTAAATTTTTATTTGAAGAAA AAACATTTATTATATCAATATTAAATTTTTTTTCTTTTATATCTAATAATACTATATTATCACCT TCGAAAAAGGGATAACATGTCTTATGATTTTTATTATATTTATTAATATCTTCATTTTTATTCTT ATCCTCTTCTCTCATTTCTATATATTTCTTTAATATCTCATCAGCTAGTATCCTTTTCTCATTCA TTTCTTGAGTGTTCTTATGAACATGTTCTGATTTATCACTGAACAAATTTTGGTTTATATTATTT GTCTCTTTTTTAACATTATTGTGTTCATCAGGTACTATTATAACATTCTCTTTTTTTTTTTTTTT TTTCTCAGGGGCATCTTTTATTTTTATATGTCTCTCTTTTGATTTTATATCTTTATTTCTGTCCT TTATTTGAGACTTCATCTGGAATCTGGTTTTTTTCTTTATGGTTG Found at i:1019802 original size:1 final size:1 Alignment explanation
Indices: 1019796--1019813 Score: 36 Period size: 1 Copynumber: 18.0 Consensus size: 1 1019786 TAACATTCTC 1019796 TTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTT 1019814 CTCAGGGGCA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 17 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 1019296 -- 1019795 ATTTTATCAAATATGTGTATAATCAATTTAATACATTCCATTTCAAAATATTCACATTTAAATAA TTTTTTCAGTGGCCTAATAACATTTGTACTGTTTTTCATTTTTTCTTTTTTATTTTTTTTAACAT AAGAATCAAAAAAAAACAAAATGTCATGACAGTTATCTTCTAAATTTTTATTTGAAGAAAAAACA TTTATTATATCAATATTAAATTTTTTTTCTTTTATATCTAATAATACTATATTATCACCTTCGAA AAAGGGATAACATGTCTTATGATTTTTATTATATTTATTAATATCTTCATTTTTATTCTTATCCT CTTCTCTCATTTCTATATATTTCTTTAATATCTCATCAGCTAGTATCCTTTTCTCATTCATTTCT TGAGTGTTCTTATGAACATGTTCTGATTTATCACTGAACAAATTTTGGTTTATATTATTTGTCTC TTTTTTAACATTATTGTGTTCATCAGGTACTATTATAACATTCTC Right flanking sequence: Indices 1019814 -- 1020313 CTCAGGGGCATCTTTTATTTTTATATGTCTCTCTTTTGATTTTATATCTTTATTTCTGTCCTTTA TTTGAGACTTCATCTGGAATCTGGTTTTTTTCTTTATGGTTGTTTTTTCTCCAGCATATGTTTCT TCTATAATTTTATTTGAATCTGCAATACTTTGTTTATCCCCATTGGTTTGATTATCCAATTTGAC TTGTGTATCATCACTAGTTTGTTTATCATAATTACATTTTTTATCATCACTACTTTGTTTATCAT CACTACTTTGTTTATCATCACTACTTTGTTTATCATCACTACTTTGTTTATCATAATTGCATTTT TTATCATAATTACATTTTTTATCATCACTACTTTGTTTATCATCACTACTTTGTTTATCATCACT ACTTTGTTTATCATCACTACTTTGTTTATCATAATTGCATTTTTTATCATCACTACTTTGTTTAT CATAATTGCATTTTTTATCATAATTACATTTTTTATCATAATTGC Found at i:1020493 original size:1 final size:1 Alignment explanation
Indices: 1020487--1020515 Score: 51 Period size: 1 Copynumber: 29.0 Consensus size: 1 1020477 ATGATGTTGG * 1020487 TTTTTTTTTTTTTTTTTTTTTTTCTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1020516 GAATATATCA Statistics Matches: 26, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 1 26 1.00 ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97 Consensus pattern (1 bp): T Left flanking sequence: Indices 1019987 -- 1020486 TGGTTTGATTATCCAATTTGACTTGTGTATCATCACTAGTTTGTTTATCATAATTACATTTTTTA TCATCACTACTTTGTTTATCATCACTACTTTGTTTATCATCACTACTTTGTTTATCATCACTACT TTGTTTATCATAATTGCATTTTTTATCATAATTACATTTTTTATCATCACTACTTTGTTTATCAT CACTACTTTGTTTATCATCACTACTTTGTTTATCATCACTACTTTGTTTATCATAATTGCATTTT TTATCATCACTACTTTGTTTATCATAATTGCATTTTTTATCATAATTACATTTTTTATCATAATT GCATTTTTTATCATCACTACTTTTTTTATCCACAACATCTAGCTGTTCCTTTTTTTGTTCTTCTC CTTTTTCCGTTTTACTTTTTCCTTTTCTTACAAGTTGTTGATTATGCTCTTTTATCTTTTTCTCC AGGATATTTTTATTCGCACGTTTTGAAATATCCATATGATGTTGG Right flanking sequence: Indices 1020516 -- 1021015 GAATATATCACTGAATTTTATTTCCTTCGATTTTAAATTAACTTTCTTTATATAATTTGTATAGT TTATATCTTTTACATAATTAAGATTTTTGAAAAATTCATTATTATTATTATTATTATTATTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTACGTTATTATTTATATGTTGTTTTTTTTTTAT TATTTTATTTCTTTTTTTTTTTTTGGCTTTTTTTTTTTTCTCATTTGTGAGATTATTTATTGTTT TCAAAAAAGAAGTGTGTGTACTTTTAGCATGTTTAAATTGTAAAATGTGAGTATTTTTATTTTTT AATTCTGTTGATGAGTTCATTAATAAATTTGATTTTTGTTTATCATGAGAAATATATATGTTTTC TTTCTTATATGATTGACTGTTCATTTTATTTTGATCATAATTTGAAAGAATTAATTGTTCTTCAG CTTTTATTTGAAGGTTCAAATTGTTAAGACTATTTTGTTTAGTAA Found at i:1020626 original size:3 final size:3 Alignment explanation
Indices: 1020618--1020641 Score: 48 Period size: 3 Copynumber: 8.0 Consensus size: 3 1020608 TGAAAAATTC 1020618 ATT ATT ATT ATT ATT ATT ATT ATT 1 ATT ATT ATT ATT ATT ATT ATT ATT 1020642 GTTGTTGTTG Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 21 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (3 bp): ATT Left flanking sequence: Indices 1020118 -- 1020617 TGTTTATCATAATTGCATTTTTTATCATAATTACATTTTTTATCATCACTACTTTGTTTATCATC ACTACTTTGTTTATCATCACTACTTTGTTTATCATCACTACTTTGTTTATCATAATTGCATTTTT TATCATCACTACTTTGTTTATCATAATTGCATTTTTTATCATAATTACATTTTTTATCATAATTG CATTTTTTATCATCACTACTTTTTTTATCCACAACATCTAGCTGTTCCTTTTTTTGTTCTTCTCC TTTTTCCGTTTTACTTTTTCCTTTTCTTACAAGTTGTTGATTATGCTCTTTTATCTTTTTCTCCA GGATATTTTTATTCGCACGTTTTGAAATATCCATATGATGTTGGTTTTTTTTTTTTTTTTTTTTT TTCTTTTTGAATATATCACTGAATTTTATTTCCTTCGATTTTAAATTAACTTTCTTTATATAATT TGTATAGTTTATATCTTTTACATAATTAAGATTTTTGAAAAATTC Right flanking sequence: Indices 1020642 -- 1021141 GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTACGTTATTATTTATATGTTGTTTTTTTT TTATTATTTTATTTCTTTTTTTTTTTTTGGCTTTTTTTTTTTTCTCATTTGTGAGATTATTTATT GTTTTCAAAAAAGAAGTGTGTGTACTTTTAGCATGTTTAAATTGTAAAATGTGAGTATTTTTATT TTTTAATTCTGTTGATGAGTTCATTAATAAATTTGATTTTTGTTTATCATGAGAAATATATATGT TTTCTTTCTTATATGATTGACTGTTCATTTTATTTTGATCATAATTTGAAAGAATTAATTGTTCT TCAGCTTTTATTTGAAGGTTCAAATTGTTAAGACTATTTTGTTTAGTAACATCATCTTTTATTGC TTCTTTAATTTCATCAAATAAATTATTTTCATACTTTTTTTTATTCTTTATATGATCATTAATAA TATGATCATTAATAATATGATCATTTGATGTTTTGTTCTTTTCTT Found at i:1020646 original size:3 final size:3 Alignment explanation
Indices: 1020640--1020677 Score: 76 Period size: 3 Copynumber: 12.7 Consensus size: 3 1020630 ATTATTATTA 1020640 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT 1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT 1020678 TACGTTATTA Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 35 1.00 ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68 Consensus pattern (3 bp): TTG Left flanking sequence: Indices 1020140 -- 1020639 TATCATAATTACATTTTTTATCATCACTACTTTGTTTATCATCACTACTTTGTTTATCATCACTA CTTTGTTTATCATCACTACTTTGTTTATCATAATTGCATTTTTTATCATCACTACTTTGTTTATC ATAATTGCATTTTTTATCATAATTACATTTTTTATCATAATTGCATTTTTTATCATCACTACTTT TTTTATCCACAACATCTAGCTGTTCCTTTTTTTGTTCTTCTCCTTTTTCCGTTTTACTTTTTCCT TTTCTTACAAGTTGTTGATTATGCTCTTTTATCTTTTTCTCCAGGATATTTTTATTCGCACGTTT TGAAATATCCATATGATGTTGGTTTTTTTTTTTTTTTTTTTTTTTCTTTTTGAATATATCACTGA ATTTTATTTCCTTCGATTTTAAATTAACTTTCTTTATATAATTTGTATAGTTTATATCTTTTACA TAATTAAGATTTTTGAAAAATTCATTATTATTATTATTATTATTA Right flanking sequence: Indices 1020678 -- 1021177 TACGTTATTATTTATATGTTGTTTTTTTTTTATTATTTTATTTCTTTTTTTTTTTTTGGCTTTTT TTTTTTTCTCATTTGTGAGATTATTTATTGTTTTCAAAAAAGAAGTGTGTGTACTTTTAGCATGT TTAAATTGTAAAATGTGAGTATTTTTATTTTTTAATTCTGTTGATGAGTTCATTAATAAATTTGA TTTTTGTTTATCATGAGAAATATATATGTTTTCTTTCTTATATGATTGACTGTTCATTTTATTTT GATCATAATTTGAAAGAATTAATTGTTCTTCAGCTTTTATTTGAAGGTTCAAATTGTTAAGACTA TTTTGTTTAGTAACATCATCTTTTATTGCTTCTTTAATTTCATCAAATAAATTATTTTCATACTT TTTTTTATTCTTTATATGATCATTAATAATATGATCATTAATAATATGATCATTTGATGTTTTGT TCTTTTCTTTTAAGGAGTTTTTTTTGTTAAAAGATTCAATTTGAT Found at i:1020705 original size:1 final size:1 Alignment explanation
Indices: 1020699--1020749 Score: 53 Period size: 1 Copynumber: 51.0 Consensus size: 1 1020689 TTATATGTTG * * * * *** 1020699 TTTTTTTTTTATTATTTTATTTCTTTTTTTTTTTTTGGCTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1020750 CTCATTTGTG Statistics Matches: 39, Mismatches: 11, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 1 39 1.00 ACGTcount: A:0.06, C:0.04, G:0.04, T:0.86 Consensus pattern (1 bp): T Left flanking sequence: Indices 1020199 -- 1020698 TCACTACTTTGTTTATCATCACTACTTTGTTTATCATAATTGCATTTTTTATCATCACTACTTTG TTTATCATAATTGCATTTTTTATCATAATTACATTTTTTATCATAATTGCATTTTTTATCATCAC TACTTTTTTTATCCACAACATCTAGCTGTTCCTTTTTTTGTTCTTCTCCTTTTTCCGTTTTACTT TTTCCTTTTCTTACAAGTTGTTGATTATGCTCTTTTATCTTTTTCTCCAGGATATTTTTATTCGC ACGTTTTGAAATATCCATATGATGTTGGTTTTTTTTTTTTTTTTTTTTTTTCTTTTTGAATATAT CACTGAATTTTATTTCCTTCGATTTTAAATTAACTTTCTTTATATAATTTGTATAGTTTATATCT TTTACATAATTAAGATTTTTGAAAAATTCATTATTATTATTATTATTATTATTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTTACGTTATTATTTATATGTTG Right flanking sequence: Indices 1020750 -- 1021249 CTCATTTGTGAGATTATTTATTGTTTTCAAAAAAGAAGTGTGTGTACTTTTAGCATGTTTAAATT GTAAAATGTGAGTATTTTTATTTTTTAATTCTGTTGATGAGTTCATTAATAAATTTGATTTTTGT TTATCATGAGAAATATATATGTTTTCTTTCTTATATGATTGACTGTTCATTTTATTTTGATCATA ATTTGAAAGAATTAATTGTTCTTCAGCTTTTATTTGAAGGTTCAAATTGTTAAGACTATTTTGTT TAGTAACATCATCTTTTATTGCTTCTTTAATTTCATCAAATAAATTATTTTCATACTTTTTTTTA TTCTTTATATGATCATTAATAATATGATCATTAATAATATGATCATTTGATGTTTTGTTCTTTTC TTTTAAGGAGTTTTTTTTGTTAAAAGATTCAATTTGATTACTATCCTTTTGAAAGATATTCATTT CTTTTACATCATTTATTTGATTATTGTTAGAATTATTAATTACAT Found at i:1020838 original size:6 final size:6 Alignment explanation
Indices: 1020827--1020839 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 1020817 AAAATGTGAG 1020827 TATTTT TATTTT T 1 TATTTT TATTTT T 1020840 TAATTCTGTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (6 bp): TATTTT Left flanking sequence: Indices 1020327 -- 1020826 ACTACTTTTTTTATCCACAACATCTAGCTGTTCCTTTTTTTGTTCTTCTCCTTTTTCCGTTTTAC TTTTTCCTTTTCTTACAAGTTGTTGATTATGCTCTTTTATCTTTTTCTCCAGGATATTTTTATTC GCACGTTTTGAAATATCCATATGATGTTGGTTTTTTTTTTTTTTTTTTTTTTTCTTTTTGAATAT ATCACTGAATTTTATTTCCTTCGATTTTAAATTAACTTTCTTTATATAATTTGTATAGTTTATAT CTTTTACATAATTAAGATTTTTGAAAAATTCATTATTATTATTATTATTATTATTGTTGTTGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTTACGTTATTATTTATATGTTGTTTTTTTTTTATTATTTT ATTTCTTTTTTTTTTTTTGGCTTTTTTTTTTTTCTCATTTGTGAGATTATTTATTGTTTTCAAAA AAGAAGTGTGTGTACTTTTAGCATGTTTAAATTGTAAAATGTGAG Right flanking sequence: Indices 1020840 -- 1021339 TAATTCTGTTGATGAGTTCATTAATAAATTTGATTTTTGTTTATCATGAGAAATATATATGTTTT CTTTCTTATATGATTGACTGTTCATTTTATTTTGATCATAATTTGAAAGAATTAATTGTTCTTCA GCTTTTATTTGAAGGTTCAAATTGTTAAGACTATTTTGTTTAGTAACATCATCTTTTATTGCTTC TTTAATTTCATCAAATAAATTATTTTCATACTTTTTTTTATTCTTTATATGATCATTAATAATAT GATCATTAATAATATGATCATTTGATGTTTTGTTCTTTTCTTTTAAGGAGTTTTTTTTGTTAAAA GATTCAATTTGATTACTATCCTTTTGAAAGATATTCATTTCTTTTACATCATTTATTTGATTATT GTTAGAATTATTAATTACATTATTATCAATATTTTTTTTTTTAATGATATTTTGATTTTCAATTA TCGTATCAGAACACTTTTCATTTAATTCATTGAATTCTTTTTCTT Found at i:1021393 original size:5 final size:5 Alignment explanation
Indices: 1021383--1021410 Score: 28 Period size: 5 Copynumber: 5.8 Consensus size: 5 1021373 TTTTAATGAC * * * 1021383 TTTTA TTTTA -TTAA TTTTT TTTTT TTTT 1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT 1021411 TTCTTCATAT Statistics Matches: 19, Mismatches: 3, Indels: 2 0.79 0.12 0.08 Matches are distributed among these distances: 4 3 0.16 5 16 0.84 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (5 bp): TTTTA Left flanking sequence: Indices 1020883 -- 1021382 TCATGAGAAATATATATGTTTTCTTTCTTATATGATTGACTGTTCATTTTATTTTGATCATAATT TGAAAGAATTAATTGTTCTTCAGCTTTTATTTGAAGGTTCAAATTGTTAAGACTATTTTGTTTAG TAACATCATCTTTTATTGCTTCTTTAATTTCATCAAATAAATTATTTTCATACTTTTTTTTATTC TTTATATGATCATTAATAATATGATCATTAATAATATGATCATTTGATGTTTTGTTCTTTTCTTT TAAGGAGTTTTTTTTGTTAAAAGATTCAATTTGATTACTATCCTTTTGAAAGATATTCATTTCTT TTACATCATTTATTTGATTATTGTTAGAATTATTAATTACATTATTATCAATATTTTTTTTTTTA ATGATATTTTGATTTTCAATTATCGTATCAGAACACTTTTCATTTAATTCATTGAATTCTTTTTC TTCTACAATTTGTTTCTCATTTGTTATGTTTCTTTTTTTAATGAC Right flanking sequence: Indices 1021411 -- 1021910 TTCTTCATATTTGTTCTCTTTTTCTTTCTTTCATCTTTATTATCATTTATTTGTTTATTTAGCTT TTTAATCCTCCCCCCTGGTATATTTTCCAAATAACTTTTTTTTTGTTTTTCATCAATACGATTAA TTCCCACGTATTTTAATTTGTCTATATTATCTATATGCTTCAATATTTTGTTGGAAATAATATAT TTCTTTTTCTTTTTCTTATATTCCTTTCTATTTGTTGACATATTTTTCTTGTCCTCCTTTTTGTC TATGTCTTTTTGTTTATCGATTTTTTCATCTTCTTGTTGTAGTACAACCATATTATCATCACTGA TCGATGTATGTGGTCTATTCATAATGGTAAAGATATGAATAAAAAAAATAATAAAATAAAAAAAA TATATATATATATATATATATATATATATTTATGTATTATAAAATTACGCAGAGGTATATTTTAA AACTATATTTGGTAAATTATATTAAAATATGGCACATATACATGT Found at i:1021403 original size:1 final size:1 Alignment explanation
Indices: 1021397--1021412 Score: 32 Period size: 1 Copynumber: 16.0 Consensus size: 1 1021387 ATTTTATTAA 1021397 TTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTT 1021413 CTTCATATTT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 15 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 1020897 -- 1021396 TATGTTTTCTTTCTTATATGATTGACTGTTCATTTTATTTTGATCATAATTTGAAAGAATTAATT GTTCTTCAGCTTTTATTTGAAGGTTCAAATTGTTAAGACTATTTTGTTTAGTAACATCATCTTTT ATTGCTTCTTTAATTTCATCAAATAAATTATTTTCATACTTTTTTTTATTCTTTATATGATCATT AATAATATGATCATTAATAATATGATCATTTGATGTTTTGTTCTTTTCTTTTAAGGAGTTTTTTT TGTTAAAAGATTCAATTTGATTACTATCCTTTTGAAAGATATTCATTTCTTTTACATCATTTATT TGATTATTGTTAGAATTATTAATTACATTATTATCAATATTTTTTTTTTTAATGATATTTTGATT TTCAATTATCGTATCAGAACACTTTTCATTTAATTCATTGAATTCTTTTTCTTCTACAATTTGTT TCTCATTTGTTATGTTTCTTTTTTTAATGACTTTTATTTTATTAA Right flanking sequence: Indices 1021413 -- 1021912 CTTCATATTTGTTCTCTTTTTCTTTCTTTCATCTTTATTATCATTTATTTGTTTATTTAGCTTTT TAATCCTCCCCCCTGGTATATTTTCCAAATAACTTTTTTTTTGTTTTTCATCAATACGATTAATT CCCACGTATTTTAATTTGTCTATATTATCTATATGCTTCAATATTTTGTTGGAAATAATATATTT CTTTTTCTTTTTCTTATATTCCTTTCTATTTGTTGACATATTTTTCTTGTCCTCCTTTTTGTCTA TGTCTTTTTGTTTATCGATTTTTTCATCTTCTTGTTGTAGTACAACCATATTATCATCACTGATC GATGTATGTGGTCTATTCATAATGGTAAAGATATGAATAAAAAAAATAATAAAATAAAAAAAATA TATATATATATATATATATATATATATTTATGTATTATAAAATTACGCAGAGGTATATTTTAAAA CTATATTTGGTAAATTATATTAAAATATGGCACATATACATGTTA Found at i:1021471 original size:4 final size:4 Alignment explanation
Indices: 1021455--1021471 Score: 27 Period size: 4 Copynumber: 4.2 Consensus size: 4 1021445 CTTTATTATC * 1021455 ATTT ATTT GTTT ATTT A 1 ATTT ATTT ATTT ATTT A 1021472 GCTTTTTAAT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 4 11 1.00 ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71 Consensus pattern (4 bp): ATTT Left flanking sequence: Indices 1020955 -- 1021454 ATTAATTGTTCTTCAGCTTTTATTTGAAGGTTCAAATTGTTAAGACTATTTTGTTTAGTAACATC ATCTTTTATTGCTTCTTTAATTTCATCAAATAAATTATTTTCATACTTTTTTTTATTCTTTATAT GATCATTAATAATATGATCATTAATAATATGATCATTTGATGTTTTGTTCTTTTCTTTTAAGGAG TTTTTTTTGTTAAAAGATTCAATTTGATTACTATCCTTTTGAAAGATATTCATTTCTTTTACATC ATTTATTTGATTATTGTTAGAATTATTAATTACATTATTATCAATATTTTTTTTTTTAATGATAT TTTGATTTTCAATTATCGTATCAGAACACTTTTCATTTAATTCATTGAATTCTTTTTCTTCTACA ATTTGTTTCTCATTTGTTATGTTTCTTTTTTTAATGACTTTTATTTTATTAATTTTTTTTTTTTT TTTCTTCATATTTGTTCTCTTTTTCTTTCTTTCATCTTTATTATC Right flanking sequence: Indices 1021472 -- 1021971 GCTTTTTAATCCTCCCCCCTGGTATATTTTCCAAATAACTTTTTTTTTGTTTTTCATCAATACGA TTAATTCCCACGTATTTTAATTTGTCTATATTATCTATATGCTTCAATATTTTGTTGGAAATAAT ATATTTCTTTTTCTTTTTCTTATATTCCTTTCTATTTGTTGACATATTTTTCTTGTCCTCCTTTT TGTCTATGTCTTTTTGTTTATCGATTTTTTCATCTTCTTGTTGTAGTACAACCATATTATCATCA CTGATCGATGTATGTGGTCTATTCATAATGGTAAAGATATGAATAAAAAAAATAATAAAATAAAA AAAATATATATATATATATATATATATATATATTTATGTATTATAAAATTACGCAGAGGTATATT TTAAAACTATATTTGGTAAATTATATTAAAATATGGCACATATACATGTTATGTACATCTAATCA CACGTGCAATATAACAACATCAAATAAATAAATATATAAAGAATT Found at i:1021616 original size:6 final size:6 Alignment explanation
Indices: 1021605--1021622 Score: 36 Period size: 6 Copynumber: 3.0 Consensus size: 6 1021595 AAATAATATA 1021605 TTTCTT TTTCTT TTTCTT 1 TTTCTT TTTCTT TTTCTT 1021623 ATATTCCTTT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83 Consensus pattern (6 bp): TTTCTT Left flanking sequence: Indices 1021105 -- 1021604 TTAATAATATGATCATTTGATGTTTTGTTCTTTTCTTTTAAGGAGTTTTTTTTGTTAAAAGATTC AATTTGATTACTATCCTTTTGAAAGATATTCATTTCTTTTACATCATTTATTTGATTATTGTTAG AATTATTAATTACATTATTATCAATATTTTTTTTTTTAATGATATTTTGATTTTCAATTATCGTA TCAGAACACTTTTCATTTAATTCATTGAATTCTTTTTCTTCTACAATTTGTTTCTCATTTGTTAT GTTTCTTTTTTTAATGACTTTTATTTTATTAATTTTTTTTTTTTTTTTCTTCATATTTGTTCTCT TTTTCTTTCTTTCATCTTTATTATCATTTATTTGTTTATTTAGCTTTTTAATCCTCCCCCCTGGT ATATTTTCCAAATAACTTTTTTTTTGTTTTTCATCAATACGATTAATTCCCACGTATTTTAATTT GTCTATATTATCTATATGCTTCAATATTTTGTTGGAAATAATATA Right flanking sequence: Indices 1021623 -- 1022122 ATATTCCTTTCTATTTGTTGACATATTTTTCTTGTCCTCCTTTTTGTCTATGTCTTTTTGTTTAT CGATTTTTTCATCTTCTTGTTGTAGTACAACCATATTATCATCACTGATCGATGTATGTGGTCTA TTCATAATGGTAAAGATATGAATAAAAAAAATAATAAAATAAAAAAAATATATATATATATATAT ATATATATATATTTATGTATTATAAAATTACGCAGAGGTATATTTTAAAACTATATTTGGTAAAT TATATTAAAATATGGCACATATACATGTTATGTACATCTAATCACACGTGCAATATAACAACATC AAATAAATAAATATATAAAGAATTATATATTCATTATTTTTTCAATAAACTACATAAAGGGTTAT AAAAAAAAAATATATATATGTATATATATATTTTATGTACATGTAATATTTTTTTATGTCATAAT TACCTGTACGGTCAGAAAAAAAAGCCGTTTTTTTTTTTTTTTTTT Found at i:1021782 original size:1 final size:1 Alignment explanation
Indices: 1021776--1021800 Score: 29 Period size: 1 Copynumber: 25.0 Consensus size: 1 1021766 AGATATGAAT * * * 1021776 AAAAAAAATAATAAAATAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAA 1021801 TATATATATA Statistics Matches: 18, Mismatches: 6, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 1 18 1.00 ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12 Consensus pattern (1 bp): A Left flanking sequence: Indices 1021276 -- 1021775 ATATTTTGATTTTCAATTATCGTATCAGAACACTTTTCATTTAATTCATTGAATTCTTTTTCTTC TACAATTTGTTTCTCATTTGTTATGTTTCTTTTTTTAATGACTTTTATTTTATTAATTTTTTTTT TTTTTTTCTTCATATTTGTTCTCTTTTTCTTTCTTTCATCTTTATTATCATTTATTTGTTTATTT AGCTTTTTAATCCTCCCCCCTGGTATATTTTCCAAATAACTTTTTTTTTGTTTTTCATCAATACG ATTAATTCCCACGTATTTTAATTTGTCTATATTATCTATATGCTTCAATATTTTGTTGGAAATAA TATATTTCTTTTTCTTTTTCTTATATTCCTTTCTATTTGTTGACATATTTTTCTTGTCCTCCTTT TTGTCTATGTCTTTTTGTTTATCGATTTTTTCATCTTCTTGTTGTAGTACAACCATATTATCATC ACTGATCGATGTATGTGGTCTATTCATAATGGTAAAGATATGAAT Right flanking sequence: Indices 1021801 -- 1022300 TATATATATATATATATATATATATATATTTATGTATTATAAAATTACGCAGAGGTATATTTTAA AACTATATTTGGTAAATTATATTAAAATATGGCACATATACATGTTATGTACATCTAATCACACG TGCAATATAACAACATCAAATAAATAAATATATAAAGAATTATATATTCATTATTTTTTCAATAA ACTACATAAAGGGTTATAAAAAAAAAATATATATATGTATATATATATTTTATGTACATGTAATA TTTTTTTATGTCATAATTACCTGTACGGTCAGAAAAAAAAGCCGTTTTTTTTTTTTTTTTTTTAT TCATTTGATATATATATATATATATATATATATATGTTTATATGTATATATATATTTTTTTTTTG GGTAGCCAAAATTTAAAATGTAATATATGAGCTATATTTTTTAATAGGAGATTAATTATTTAAAC AACTGAAACAATTGAGAATTATACGTGCAAAAAAAAAAAAAAAAA Found at i:1021788 original size:3 final size:3 Alignment explanation
Indices: 1021773--1021802 Score: 25 Period size: 3 Copynumber: 10.3 Consensus size: 3 1021763 TAAAGATATG * * * * 1021773 AAT AAA AAA AAT AAT AA- AAT AAA AAA AAT A 1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A 1021803 TATATATATA Statistics Matches: 22, Mismatches: 4, Indels: 2 0.79 0.14 0.07 Matches are distributed among these distances: 2 2 0.09 3 20 0.91 ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17 Consensus pattern (3 bp): AAT Left flanking sequence: Indices 1021273 -- 1021772 ATGATATTTTGATTTTCAATTATCGTATCAGAACACTTTTCATTTAATTCATTGAATTCTTTTTC TTCTACAATTTGTTTCTCATTTGTTATGTTTCTTTTTTTAATGACTTTTATTTTATTAATTTTTT TTTTTTTTTTCTTCATATTTGTTCTCTTTTTCTTTCTTTCATCTTTATTATCATTTATTTGTTTA TTTAGCTTTTTAATCCTCCCCCCTGGTATATTTTCCAAATAACTTTTTTTTTGTTTTTCATCAAT ACGATTAATTCCCACGTATTTTAATTTGTCTATATTATCTATATGCTTCAATATTTTGTTGGAAA TAATATATTTCTTTTTCTTTTTCTTATATTCCTTTCTATTTGTTGACATATTTTTCTTGTCCTCC TTTTTGTCTATGTCTTTTTGTTTATCGATTTTTTCATCTTCTTGTTGTAGTACAACCATATTATC ATCACTGATCGATGTATGTGGTCTATTCATAATGGTAAAGATATG Right flanking sequence: Indices 1021803 -- 1022302 TATATATATATATATATATATATATATTTATGTATTATAAAATTACGCAGAGGTATATTTTAAAA CTATATTTGGTAAATTATATTAAAATATGGCACATATACATGTTATGTACATCTAATCACACGTG CAATATAACAACATCAAATAAATAAATATATAAAGAATTATATATTCATTATTTTTTCAATAAAC TACATAAAGGGTTATAAAAAAAAAATATATATATGTATATATATATTTTATGTACATGTAATATT TTTTTATGTCATAATTACCTGTACGGTCAGAAAAAAAAGCCGTTTTTTTTTTTTTTTTTTTATTC ATTTGATATATATATATATATATATATATATATGTTTATATGTATATATATATTTTTTTTTTGGG TAGCCAAAATTTAAAATGTAATATATGAGCTATATTTTTTAATAGGAGATTAATTATTTAAACAA CTGAAACAATTGAGAATTATACGTGCAAAAAAAAAAAAAAAAAAA Found at i:1021805 original size:2 final size:2 Alignment explanation
Indices: 1021800--1021841 Score: 63 Period size: 2 Copynumber: 21.5 Consensus size: 2 1021790 AATAAAAAAA * * 1021800 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT GT AT -T AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1021841 A 1 A 1021842 AAATTACGCA Statistics Matches: 35, Mismatches: 4, Indels: 2 0.85 0.10 0.05 Matches are distributed among these distances: 1 1 0.03 2 34 0.97 ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52 Consensus pattern (2 bp): AT Left flanking sequence: Indices 1021300 -- 1021799 TCAGAACACTTTTCATTTAATTCATTGAATTCTTTTTCTTCTACAATTTGTTTCTCATTTGTTAT GTTTCTTTTTTTAATGACTTTTATTTTATTAATTTTTTTTTTTTTTTTCTTCATATTTGTTCTCT TTTTCTTTCTTTCATCTTTATTATCATTTATTTGTTTATTTAGCTTTTTAATCCTCCCCCCTGGT ATATTTTCCAAATAACTTTTTTTTTGTTTTTCATCAATACGATTAATTCCCACGTATTTTAATTT GTCTATATTATCTATATGCTTCAATATTTTGTTGGAAATAATATATTTCTTTTTCTTTTTCTTAT ATTCCTTTCTATTTGTTGACATATTTTTCTTGTCCTCCTTTTTGTCTATGTCTTTTTGTTTATCG ATTTTTTCATCTTCTTGTTGTAGTACAACCATATTATCATCACTGATCGATGTATGTGGTCTATT CATAATGGTAAAGATATGAATAAAAAAAATAATAAAATAAAAAAA Right flanking sequence: Indices 1021842 -- 1022341 AAATTACGCAGAGGTATATTTTAAAACTATATTTGGTAAATTATATTAAAATATGGCACATATAC ATGTTATGTACATCTAATCACACGTGCAATATAACAACATCAAATAAATAAATATATAAAGAATT ATATATTCATTATTTTTTCAATAAACTACATAAAGGGTTATAAAAAAAAAATATATATATGTATA TATATATTTTATGTACATGTAATATTTTTTTATGTCATAATTACCTGTACGGTCAGAAAAAAAAG CCGTTTTTTTTTTTTTTTTTTTATTCATTTGATATATATATATATATATATATATATATGTTTAT ATGTATATATATATTTTTTTTTTGGGTAGCCAAAATTTAAAATGTAATATATGAGCTATATTTTT TAATAGGAGATTAATTATTTAAACAACTGAAACAATTGAGAATTATACGTGCAAAAAAAAAAAAA AAAAAAATTAAAATTAACAAATAAATAAATAAATTTATACGTACA Found at i:1021957 original size:4 final size:4 Alignment explanation
Indices: 1021948--1021966 Score: 31 Period size: 4 Copynumber: 4.8 Consensus size: 4 1021938 TAACAACATC * 1021948 AAAT AAAT AAAT ATAT AAA 1 AAAT AAAT AAAT AAAT AAA 1021967 GAATTATATA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 4 13 1.00 ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26 Consensus pattern (4 bp): AAAT Left flanking sequence: Indices 1021448 -- 1021947 TATTATCATTTATTTGTTTATTTAGCTTTTTAATCCTCCCCCCTGGTATATTTTCCAAATAACTT TTTTTTTGTTTTTCATCAATACGATTAATTCCCACGTATTTTAATTTGTCTATATTATCTATATG CTTCAATATTTTGTTGGAAATAATATATTTCTTTTTCTTTTTCTTATATTCCTTTCTATTTGTTG ACATATTTTTCTTGTCCTCCTTTTTGTCTATGTCTTTTTGTTTATCGATTTTTTCATCTTCTTGT TGTAGTACAACCATATTATCATCACTGATCGATGTATGTGGTCTATTCATAATGGTAAAGATATG AATAAAAAAAATAATAAAATAAAAAAAATATATATATATATATATATATATATATATTTATGTAT TATAAAATTACGCAGAGGTATATTTTAAAACTATATTTGGTAAATTATATTAAAATATGGCACAT ATACATGTTATGTACATCTAATCACACGTGCAATATAACAACATC Right flanking sequence: Indices 1021967 -- 1022466 GAATTATATATTCATTATTTTTTCAATAAACTACATAAAGGGTTATAAAAAAAAAATATATATAT GTATATATATATTTTATGTACATGTAATATTTTTTTATGTCATAATTACCTGTACGGTCAGAAAA AAAAGCCGTTTTTTTTTTTTTTTTTTTATTCATTTGATATATATATATATATATATATATATATG TTTATATGTATATATATATTTTTTTTTTGGGTAGCCAAAATTTAAAATGTAATATATGAGCTATA TTTTTTAATAGGAGATTAATTATTTAAACAACTGAAACAATTGAGAATTATACGTGCAAAAAAAA AAAAAAAAAAAATTAAAATTAACAAATAAATAAATAAATTTATACGTACACATAATATATATATA TTAATATCAATTATGACTTAAGTGTATTGAATTTAAAATTAAAATATAAAAACCAAATTATCAAA AAGTTACACATAAAAAAAAAAAAAAAAATGTCCATGCATAAATAA Found at i:1022027 original size:2 final size:2 Alignment explanation
Indices: 1022022--1022043 Score: 37 Period size: 2 Copynumber: 11.0 Consensus size: 2 1022012 TAAAAAAAAA * 1022022 AT AT AT AT AT GT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT 1022044 TTTATGTACA Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 2 18 1.00 ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 1021522 -- 1022021 TTTTCATCAATACGATTAATTCCCACGTATTTTAATTTGTCTATATTATCTATATGCTTCAATAT TTTGTTGGAAATAATATATTTCTTTTTCTTTTTCTTATATTCCTTTCTATTTGTTGACATATTTT TCTTGTCCTCCTTTTTGTCTATGTCTTTTTGTTTATCGATTTTTTCATCTTCTTGTTGTAGTACA ACCATATTATCATCACTGATCGATGTATGTGGTCTATTCATAATGGTAAAGATATGAATAAAAAA AATAATAAAATAAAAAAAATATATATATATATATATATATATATATATTTATGTATTATAAAATT ACGCAGAGGTATATTTTAAAACTATATTTGGTAAATTATATTAAAATATGGCACATATACATGTT ATGTACATCTAATCACACGTGCAATATAACAACATCAAATAAATAAATATATAAAGAATTATATA TTCATTATTTTTTCAATAAACTACATAAAGGGTTATAAAAAAAAA Right flanking sequence: Indices 1022044 -- 1022543 TTTATGTACATGTAATATTTTTTTATGTCATAATTACCTGTACGGTCAGAAAAAAAAGCCGTTTT TTTTTTTTTTTTTTTATTCATTTGATATATATATATATATATATATATATATGTTTATATGTATA TATATATTTTTTTTTTGGGTAGCCAAAATTTAAAATGTAATATATGAGCTATATTTTTTAATAGG AGATTAATTATTTAAACAACTGAAACAATTGAGAATTATACGTGCAAAAAAAAAAAAAAAAAAAA TTAAAATTAACAAATAAATAAATAAATTTATACGTACACATAATATATATATATTAATATCAATT ATGACTTAAGTGTATTGAATTTAAAATTAAAATATAAAAACCAAATTATCAAAAAGTTACACATA AAAAAAAAAAAAAAAATGTCCATGCATAAATAAACATACATACATATATATATATATATATATAT ATATTTATTTATTTATTTATTTATTTATGCTTCCCTTATTGGTTG Found at i:1022109 original size:1 final size:1 Alignment explanation
Indices: 1022105--1022123 Score: 38 Period size: 1 Copynumber: 19.0 Consensus size: 1 1022095 AAAAAAGCCG 1022105 TTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTT 1022124 ATTCATTTGA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 18 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 1021605 -- 1022104 TTTCTTTTTCTTTTTCTTATATTCCTTTCTATTTGTTGACATATTTTTCTTGTCCTCCTTTTTGT CTATGTCTTTTTGTTTATCGATTTTTTCATCTTCTTGTTGTAGTACAACCATATTATCATCACTG ATCGATGTATGTGGTCTATTCATAATGGTAAAGATATGAATAAAAAAAATAATAAAATAAAAAAA ATATATATATATATATATATATATATATATTTATGTATTATAAAATTACGCAGAGGTATATTTTA AAACTATATTTGGTAAATTATATTAAAATATGGCACATATACATGTTATGTACATCTAATCACAC GTGCAATATAACAACATCAAATAAATAAATATATAAAGAATTATATATTCATTATTTTTTCAATA AACTACATAAAGGGTTATAAAAAAAAAATATATATATGTATATATATATTTTATGTACATGTAAT ATTTTTTTATGTCATAATTACCTGTACGGTCAGAAAAAAAAGCCG Right flanking sequence: Indices 1022124 -- 1022623 ATTCATTTGATATATATATATATATATATATATATATGTTTATATGTATATATATATTTTTTTTT TGGGTAGCCAAAATTTAAAATGTAATATATGAGCTATATTTTTTAATAGGAGATTAATTATTTAA ACAACTGAAACAATTGAGAATTATACGTGCAAAAAAAAAAAAAAAAAAAATTAAAATTAACAAAT AAATAAATAAATTTATACGTACACATAATATATATATATTAATATCAATTATGACTTAAGTGTAT TGAATTTAAAATTAAAATATAAAAACCAAATTATCAAAAAGTTACACATAAAAAAAAAAAAAAAA ATGTCCATGCATAAATAAACATACATACATATATATATATATATATATATATATTTATTTATTTA TTTATTTATTTATGCTTCCCTTATTGGTTGTCTTTTTTATATCTGTCCCTCATCAATGTTGTAAC ATGCTCTTTTACAGGTGTTATATTGTGATTATAAATATAATCCTG Found at i:1022138 original size:2 final size:2 Alignment explanation
Indices: 1022133--1022180 Score: 75 Period size: 2 Copynumber: 24.0 Consensus size: 2 1022123 TATTCATTTG * * * 1022133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT TT AT AT GT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1022175 AT AT AT 1 AT AT AT 1022181 TTTTTTTTTG Statistics Matches: 41, Mismatches: 5, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 2 41 1.00 ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52 Consensus pattern (2 bp): AT Left flanking sequence: Indices 1021633 -- 1022132 CTATTTGTTGACATATTTTTCTTGTCCTCCTTTTTGTCTATGTCTTTTTGTTTATCGATTTTTTC ATCTTCTTGTTGTAGTACAACCATATTATCATCACTGATCGATGTATGTGGTCTATTCATAATGG TAAAGATATGAATAAAAAAAATAATAAAATAAAAAAAATATATATATATATATATATATATATAT ATTTATGTATTATAAAATTACGCAGAGGTATATTTTAAAACTATATTTGGTAAATTATATTAAAA TATGGCACATATACATGTTATGTACATCTAATCACACGTGCAATATAACAACATCAAATAAATAA ATATATAAAGAATTATATATTCATTATTTTTTCAATAAACTACATAAAGGGTTATAAAAAAAAAA TATATATATGTATATATATATTTTATGTACATGTAATATTTTTTTATGTCATAATTACCTGTACG GTCAGAAAAAAAAGCCGTTTTTTTTTTTTTTTTTTTATTCATTTG Right flanking sequence: Indices 1022181 -- 1022680 TTTTTTTTTGGGTAGCCAAAATTTAAAATGTAATATATGAGCTATATTTTTTAATAGGAGATTAA TTATTTAAACAACTGAAACAATTGAGAATTATACGTGCAAAAAAAAAAAAAAAAAAAATTAAAAT TAACAAATAAATAAATAAATTTATACGTACACATAATATATATATATTAATATCAATTATGACTT AAGTGTATTGAATTTAAAATTAAAATATAAAAACCAAATTATCAAAAAGTTACACATAAAAAAAA AAAAAAAAATGTCCATGCATAAATAAACATACATACATATATATATATATATATATATATATTTA TTTATTTATTTATTTATTTATGCTTCCCTTATTGGTTGTCTTTTTTATATCTGTCCCTCATCAAT GTTGTAACATGCTCTTTTACAGGTGTTATATTGTGATTATAAATATAATCCTGGTAAATTTCCAC AAACCTGTCTCTTATATACTTCCTGTTCATAGCTTGACAAGCATT Found at i:1022290 original size:1 final size:1 Alignment explanation
Indices: 1022284--1022303 Score: 40 Period size: 1 Copynumber: 20.0 Consensus size: 1 1022274 TTATACGTGC 1022284 AAAAAAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAA 1022304 TTAAAATTAA Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 19 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 1021784 -- 1022283 TAATAAAATAAAAAAAATATATATATATATATATATATATATATATTTATGTATTATAAAATTAC GCAGAGGTATATTTTAAAACTATATTTGGTAAATTATATTAAAATATGGCACATATACATGTTAT GTACATCTAATCACACGTGCAATATAACAACATCAAATAAATAAATATATAAAGAATTATATATT CATTATTTTTTCAATAAACTACATAAAGGGTTATAAAAAAAAAATATATATATGTATATATATAT TTTATGTACATGTAATATTTTTTTATGTCATAATTACCTGTACGGTCAGAAAAAAAAGCCGTTTT TTTTTTTTTTTTTTTATTCATTTGATATATATATATATATATATATATATATGTTTATATGTATA TATATATTTTTTTTTTGGGTAGCCAAAATTTAAAATGTAATATATGAGCTATATTTTTTAATAGG AGATTAATTATTTAAACAACTGAAACAATTGAGAATTATACGTGC Right flanking sequence: Indices 1022304 -- 1022803 TTAAAATTAACAAATAAATAAATAAATTTATACGTACACATAATATATATATATTAATATCAATT ATGACTTAAGTGTATTGAATTTAAAATTAAAATATAAAAACCAAATTATCAAAAAGTTACACATA AAAAAAAAAAAAAAAATGTCCATGCATAAATAAACATACATACATATATATATATATATATATAT ATATTTATTTATTTATTTATTTATTTATGCTTCCCTTATTGGTTGTCTTTTTTATATCTGTCCCT CATCAATGTTGTAACATGCTCTTTTACAGGTGTTATATTGTGATTATAAATATAATCCTGGTAAA TTTCCACAAACCTGTCTCTTATATACTTCCTGTTCATAGCTTGACAAGCATTTCTGGCCTCTTCT TCATCATCGAAATACACATATGCATGCCCAGTGGGCTTATTCTTAATTCCTTTAATTATATGAAT GGGATATGCTTGTTTTGTTAATTGGAAATCTCTAAAGAAATTTTT Found at i:1022309 original size:6 final size:6 Alignment explanation
Indices: 1022300--1022313 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 1022290 AAAAAAAAAA 1022300 AAAATT AAAATT AA 1 AAAATT AAAATT AA 1022314 CAAATAAATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (6 bp): AAAATT Left flanking sequence: Indices 1021800 -- 1022299 ATATATATATATATATATATATATATATATTTATGTATTATAAAATTACGCAGAGGTATATTTTA AAACTATATTTGGTAAATTATATTAAAATATGGCACATATACATGTTATGTACATCTAATCACAC GTGCAATATAACAACATCAAATAAATAAATATATAAAGAATTATATATTCATTATTTTTTCAATA AACTACATAAAGGGTTATAAAAAAAAAATATATATATGTATATATATATTTTATGTACATGTAAT ATTTTTTTATGTCATAATTACCTGTACGGTCAGAAAAAAAAGCCGTTTTTTTTTTTTTTTTTTTA TTCATTTGATATATATATATATATATATATATATATGTTTATATGTATATATATATTTTTTTTTT GGGTAGCCAAAATTTAAAATGTAATATATGAGCTATATTTTTTAATAGGAGATTAATTATTTAAA CAACTGAAACAATTGAGAATTATACGTGCAAAAAAAAAAAAAAAA Right flanking sequence: Indices 1022314 -- 1022813 CAAATAAATAAATAAATTTATACGTACACATAATATATATATATTAATATCAATTATGACTTAAG TGTATTGAATTTAAAATTAAAATATAAAAACCAAATTATCAAAAAGTTACACATAAAAAAAAAAA AAAAAATGTCCATGCATAAATAAACATACATACATATATATATATATATATATATATATTTATTT ATTTATTTATTTATTTATGCTTCCCTTATTGGTTGTCTTTTTTATATCTGTCCCTCATCAATGTT GTAACATGCTCTTTTACAGGTGTTATATTGTGATTATAAATATAATCCTGGTAAATTTCCACAAA CCTGTCTCTTATATACTTCCTGTTCATAGCTTGACAAGCATTTCTGGCCTCTTCTTCATCATCGA AATACACATATGCATGCCCAGTGGGCTTATTCTTAATTCCTTTAATTATATGAATGGGATATGCT TGTTTTGTTAATTGGAAATCTCTAAAGAAATTTTTTATTTCTTCT Found at