TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739986 P. falciparum 3D7 GENOMIC chr12 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2271477 ACGTcount: A:0.41, C:0.10, G:0.10, T:0.40 Found at i: i:587468 original size:12 final size:12 Alignment explanation
Indices: 587451--587483 Score: 45 Period size: 12 Copynumber: 2.8 Consensus size: 12 587441 TGATATATTT * * 587451 TTTTTTTTTTTC 1 TTTTTTTATTCC 587463 TTTTTTTATTCC 1 TTTTTTTATTCC * 587475 TTTTTATAT 1 TTTTTTTAT 587484 GTGCATCAAA Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 12 18 1.00 ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82 Consensus pattern (12 bp): TTTTTTTATTCC Left flanking sequence: Indices 586951 -- 587450 TGATAGAAAATATGACCCAACTTGGCACTGTGTTGTAGGAAGAAATTTTGGATCTTATGTTACTC ACGAAACCAAAAATTTTATATATTTTTATATTGGACAAGTAGCTATATTATTATTTAAATCGGGA TGAAGTATAACCTTTATAATAATGACATGACCGATTTTATCTTTAAATCGATTTCCCATTTAAAT AAAACAATATATATATATATAAATATATATATATATGTTATATACAACATTCAAAAAGAAGAACA AATTAAGAATAAATTTTTATTTATAAAAAGTTTATTATTCTTTTCTTTTTTTTTTATAACTTAAT TTTTTTTTTTTCTTTTTCTTCCAAAACTTATTTATTTATATACACATATAAAAAATATATATGTA TTAAAATACGTATGACTATTTTTATATAAATATTTTTGTCTATATGTCTTAATATTTATTGATAT TAATAACATTTATTTTTCTATTTTTATCGTTTTATTGATATATTT Right flanking sequence: Indices 587484 -- 587983 GTGCATCAAAAATGAACATCATTTGAAAAGTTATACATTTATATATAACACATATATGTATTCTC CCACTTATTTTATTTTTTTTTTTTCTTTATTCTTTTTAAATAAGTATGAATACTTGCAAAAAAAA AAAATATATATATATATATATATACATTATATAATATGATATAAATAAAATAATATATCAATATA AGGAATATTATAATCATACCATTTCTATCTTTTAAATATTCCATTTATTTCATATTAATATGATG ATTCCAAAATATACTAATAAAAGTATTTTTAATTATTAATGGTTTATAAGATTTTTTACTAAATC ATAAACGACAACTATATGTATAAAAAAAAAAAAAAAAAAATTAATTTTAAATGTATACACATTTG TTACAATAAACATAAAAACTAAACAAAATATAAAATAAAATAAGGATAAAATAATATTTTATTTA TTTTTACAAATTAAAAATATAATTTTTGACTAAAAAGAAAAAAAA Found at i:587646 original size:19 final size:18 Alignment explanation
Indices: 587622--587671 Score: 61 Period size: 19 Copynumber: 2.7 Consensus size: 18 587612 AAAAAATATA * 587622 TATATATATATATATACAT 1 TATATA-ATATATATAAAT 587641 TATATAATATGATATAAAT 1 TATATAATAT-ATATAAAT * * 587660 AAAATAATATAT 1 TATATAATATAT 587672 CAATATAAGG Statistics Matches: 27, Mismatches: 3, Indels: 3 0.82 0.09 0.09 Matches are distributed among these distances: 18 6 0.22 19 21 0.78 ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42 Consensus pattern (18 bp): TATATAATATATATAAAT Left flanking sequence: Indices 587122 -- 587621 TTTAAATCGATTTCCCATTTAAATAAAACAATATATATATATATAAATATATATATATATGTTAT ATACAACATTCAAAAAGAAGAACAAATTAAGAATAAATTTTTATTTATAAAAAGTTTATTATTCT TTTCTTTTTTTTTTATAACTTAATTTTTTTTTTTTCTTTTTCTTCCAAAACTTATTTATTTATAT ACACATATAAAAAATATATATGTATTAAAATACGTATGACTATTTTTATATAAATATTTTTGTCT ATATGTCTTAATATTTATTGATATTAATAACATTTATTTTTCTATTTTTATCGTTTTATTGATAT ATTTTTTTTTTTTTTCTTTTTTTATTCCTTTTTATATGTGCATCAAAAATGAACATCATTTGAAA AGTTATACATTTATATATAACACATATATGTATTCTCCCACTTATTTTATTTTTTTTTTTTCTTT ATTCTTTTTAAATAAGTATGAATACTTGCAAAAAAAAAAAATATA Right flanking sequence: Indices 587672 -- 588171 CAATATAAGGAATATTATAATCATACCATTTCTATCTTTTAAATATTCCATTTATTTCATATTAA TATGATGATTCCAAAATATACTAATAAAAGTATTTTTAATTATTAATGGTTTATAAGATTTTTTA CTAAATCATAAACGACAACTATATGTATAAAAAAAAAAAAAAAAAAATTAATTTTAAATGTATAC ACATTTGTTACAATAAACATAAAAACTAAACAAAATATAAAATAAAATAAGGATAAAATAATATT TTATTTATTTTTACAAATTAAAAATATAATTTTTGACTAAAAAGAAAAAAAAAAAAAAAAAAAAT TATAAAGCCAATAAAATTAAAATGCTAAAAGCAGCGCACCAATTTTGCGTCTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTGTTCTAGCTGTTTATAAGAACTAGCTAAAAAGGGTAAAGTTTTTATTC TCTTGTTCTTTCAATATCTATATTTTTGGTTAGTAAATATATTTT Found at i:588719 original size:21 final size:21 Alignment explanation
Indices: 588693--588733 Score: 61 Period size: 21 Copynumber: 2.0 Consensus size: 21 588683 AAAAAAAAAA * 588693 TATATATATATATTAAATAAT 1 TATATAAATATATTAAATAAT * * 588714 TATATAAATATTTTTAATAA 1 TATATAAATATATTAAATAA 588734 AATAACTACA Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 21 17 1.00 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (21 bp): TATATAAATATATTAAATAAT Left flanking sequence: Indices 588193 -- 588692 AATGAATTGTTTATCAGTAGTCAGTGCCATCATTAATCCTCCAAAGGAAGCATATACAGTCCTAA AAGAAATTGATAAAAATATGAAATAAATAAATATATATATATATATATGTATATAATAAATGCTA CCACTTAACAATGTAACATTTTTAATAGACAAATATATGTATGGTACAGGTTAAAAAATTATAAA TTTATATAAATGTCCATTAAAAAAAAAAAAAAAAAAAAATACATAATTAAATACATATAAAAATA TTTTATTATATAATACATATACACATTAATACATTAATATTTATATATTCTTCATATTTATAGGG AAATATTAAATTATACCTTCTTTCAGATGATAATTCCTCAAATTTAAAAATTCTTCCACTCATAA TATATTCAATATTATTTAATGGAACATTTTCATTTTGTTCCCAACCCTTTTCATCATTTCGATTT AACAATTTATCTTGAAGTGCTAAATAAATAGCCTGAAAAAAAAAA Right flanking sequence: Indices 588734 -- 589233 AATAACTACATAAATAAATAAGTAGAACTATACAGATAATAAAATAATGCCTTTATTTTTCTTTT CTCTTTTTTAAATATTACCTTCTTTTCTTCAACCTTGAACAATTCAGAATGAACATCAAGTATTA ACTCTGCATCATAACCTGTACTTTTTGCTTTAATTCTACTCACTTTTTCAAATTTTGAATTATCT ACACTACTTATAACAAAGCGATCTTCAAATAAAATGTTTGATGCCATTGTTCTTTATATCATTAA TATATATATATATATATATATATATATTTTAAGTTAATATAAAAATTTTACAAATTATATACAGT TTTTTATTAAACAATATTTTACATTTATTTCATAATTTTTTTTATAGATTCATAATACTATATAA AATTTGGAAATTTTTAAACAAAACTCATTATATAATATTTATTCTTATTTCAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAATCGGATTCCTAATGTTTT Found at i:590096 original size:17 final size:17 Alignment explanation
Indices: 590074--590164 Score: 102 Period size: 17 Copynumber: 5.2 Consensus size: 17 590064 TATAATAATG 590074 ATAAAAAAAAAAAATAA 1 ATAAAAAAAAAAAATAA * 590091 ATAAAAAAAAAAAAAAA 1 ATAAAAAAAAAAAATAA * 590108 ACGTAAAAAATAAAAAT-A 1 A--TAAAAAAAAAAAATAA 590126 ATAAAAAAATAAAAAT-A 1 ATAAAAAAA-AAAAATAA * 590143 ATAAAAATAATAAAAATAT 1 ATAAAAA-AA-AAAAATAA 590162 ATA 1 ATA 590165 TTTAATAATA Statistics Matches: 64, Mismatches: 5, Indels: 8 0.83 0.06 0.10 Matches are distributed among these distances: 16 7 0.11 17 31 0.48 18 11 0.17 19 15 0.23 ACGTcount: A:0.81, C:0.01, G:0.01, T:0.16 Consensus pattern (17 bp): ATAAAAAAAAAAAATAA Left flanking sequence: Indices 589574 -- 590073 AACAAAAATTATATTAAGATTAAAATTTTTTTTTTAATTTATATAAAATATGCTTACATAAATAT TTTGAATATTTTGAAGAAATAAGTTGTTATTTTATTATTTTTTTTTTTTTTTTTTTGTCTTCACT TTTGCTTTCTTTAATTATTTATAAAGCGTAAATAATTACTAAAACTTTTTAAGAAACATACTAAT TTTATAAACATAAATATTCTCATATATTAAAAATATTGTTTATATAACAATTACATTACTTTTAA TTTTTAATTTAAAAACGTGTATATCTAAAAAAATAGAAAAGATAAACCATGCAACTAAGTTGTAA TGTCTTGAAATTTTGTTAATAAAAAAAATATAGTAATAATATTAACAAGAATGAAAAATGAATGA TGTAAATATCTTCAAATATAAATGTTTTTATATATTATTGAATTTTAAATGAAAAATGGGGTACA TATATACAAATATATATAAGAATATATGTATCATATATAATAATG Right flanking sequence: Indices 590165 -- 590664 TTTAATAATATATCATTTCATTTTAATAACTTCTACCAAATAAACACCATCTTTTAGCTGGTTTC CCTGACCAGAAACATTTCATATTTGGTGGCATAGGTGGTTGATCTAACGGGATACATAAAGGTTT CATAGCACCAGATAATGTCGTTTCACTGTTTGTTTGGTTTAATGATAATCTTTGAGTTTCTTTTT TAATTTCTTCTTCTGTTGCAATATCTTCACACCATGGTGCAAGTACCATTTTCTTTTTATTTAAT GCATTCATGACTTCACTAAAACTCGTAACTTGAACAATTGAATCGTCTAATTTTTTCTTTGCTTT TAAGAAGAGGTTTTTATGAATATCAACAAGCATTTGTTGTGTTTCTAATAATACGGATTCTTTTT TGACATTACATTTTTCGTTATTATCTCTTCTAACAATAACACAAGAATTATTTTGTAAATCTTTA GGTCCAACTTCTATTCTTATGGGAATACCTCTTAATTCCCAATGA Found at i:590176 original size:14 final size:15 Alignment explanation
Indices: 590153--590182 Score: 46 Period size: 14 Copynumber: 2.1 Consensus size: 15 590143 ATAAAAATAA 590153 TAAAAATATAT-ATT 1 TAAAAATATATCATT * 590167 TAATAATATATCATT 1 TAAAAATATATCATT 590182 T 1 T 590183 CATTTTAATA Statistics Matches: 14, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 14 10 0.71 15 4 0.29 ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47 Consensus pattern (15 bp): TAAAAATATATCATT Left flanking sequence: Indices 589653 -- 590152 AGAAATAAGTTGTTATTTTATTATTTTTTTTTTTTTTTTTTTGTCTTCACTTTTGCTTTCTTTAA TTATTTATAAAGCGTAAATAATTACTAAAACTTTTTAAGAAACATACTAATTTTATAAACATAAA TATTCTCATATATTAAAAATATTGTTTATATAACAATTACATTACTTTTAATTTTTAATTTAAAA ACGTGTATATCTAAAAAAATAGAAAAGATAAACCATGCAACTAAGTTGTAATGTCTTGAAATTTT GTTAATAAAAAAAATATAGTAATAATATTAACAAGAATGAAAAATGAATGATGTAAATATCTTCA AATATAAATGTTTTTATATATTATTGAATTTTAAATGAAAAATGGGGTACATATATACAAATATA TATAAGAATATATGTATCATATATAATAATGATAAAAAAAAAAAATAAATAAAAAAAAAAAAAAA ACGTAAAAAATAAAAATAATAAAAAAATAAAAATAATAAAAATAA Right flanking sequence: Indices 590183 -- 590682 CATTTTAATAACTTCTACCAAATAAACACCATCTTTTAGCTGGTTTCCCTGACCAGAAACATTTC ATATTTGGTGGCATAGGTGGTTGATCTAACGGGATACATAAAGGTTTCATAGCACCAGATAATGT CGTTTCACTGTTTGTTTGGTTTAATGATAATCTTTGAGTTTCTTTTTTAATTTCTTCTTCTGTTG CAATATCTTCACACCATGGTGCAAGTACCATTTTCTTTTTATTTAATGCATTCATGACTTCACTA AAACTCGTAACTTGAACAATTGAATCGTCTAATTTTTTCTTTGCTTTTAAGAAGAGGTTTTTATG AATATCAACAAGCATTTGTTGTGTTTCTAATAATACGGATTCTTTTTTGACATTACATTTTTCGT TATTATCTCTTCTAACAATAACACAAGAATTATTTTGTAAATCTTTAGGTCCAACTTCTATTCTT ATGGGAATACCTCTTAATTCCCAATGATTGAATTTATAACCAGGA Found at i:590741 original size:11 final size:11 Alignment explanation
Indices: 590725--590757 Score: 52 Period size: 11 Copynumber: 3.0 Consensus size: 11 590715 AATTTGTGCA 590725 TTTTTCAATAT 1 TTTTTCAATAT 590736 TTTTTCAATAT 1 TTTTTCAATAT * * 590747 CTTTACAATAT 1 TTTTTCAATAT 590758 GAGTGTATAG Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 20 1.00 ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58 Consensus pattern (11 bp): TTTTTCAATAT Left flanking sequence: Indices 590225 -- 590724 GTTTCCCTGACCAGAAACATTTCATATTTGGTGGCATAGGTGGTTGATCTAACGGGATACATAAA GGTTTCATAGCACCAGATAATGTCGTTTCACTGTTTGTTTGGTTTAATGATAATCTTTGAGTTTC TTTTTTAATTTCTTCTTCTGTTGCAATATCTTCACACCATGGTGCAAGTACCATTTTCTTTTTAT TTAATGCATTCATGACTTCACTAAAACTCGTAACTTGAACAATTGAATCGTCTAATTTTTTCTTT GCTTTTAAGAAGAGGTTTTTATGAATATCAACAAGCATTTGTTGTGTTTCTAATAATACGGATTC TTTTTTGACATTACATTTTTCGTTATTATCTCTTCTAACAATAACACAAGAATTATTTTGTAAAT CTTTAGGTCCAACTTCTATTCTTATGGGAATACCTCTTAATTCCCAATGATTGAATTTATAACCA GGAGAATAAGATGCTCTATCATCATAAACACAATTAATTTGTGCA Right flanking sequence: Indices 590758 -- 591257 GAGTGTATAGCATTTTCATCTGTTGTTTTATAGAAGATAGGTACAATAACAACTTTATATTTAGA AACATTTGGTGGTAGAACTAATCCTTTATCATCACCATGTGTCATTATCATAATACCAATAGATC TAGTGGTACAACCCCATGATGTTTGATGAACATATTGTTTAACTTCATTTTCATCTTCAAATTCA ATTTTAAACATTTTTGCAAAATTTGTTCCAAGATAATGAGATGTAGCTGCTTGTATGGCTCTTCC ATTTTCGCTTATAAAAGCTTCAGCAGTAGAAGTAAAATTTGCACCTCCAAATTTTTCTCCTTCAC TTTTTATTCCTTTAATAATAGGTACAGCTAGATATTCTTCATACCATCTCCTATACAAATCTAGA ATATCAAAGACTAATTTTACAGCTTCTTCTTCATTTTTGTGAGCTGTATGTCCTTCTTGCCATAA AAATTCTCGAGTTCTAATAAATGGAGTTGGTTGTTTAAATTCCCA Found at i:593111 original size:11 final size:11 Alignment explanation
Indices: 593095--593117 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 593085 ACTAACAACA 593095 ATAAAATACAT 1 ATAAAATACAT * 593106 ATAAAATATAT 1 ATAAAATACAT 593117 A 1 A 593118 CATAAGATAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30 Consensus pattern (11 bp): ATAAAATACAT Left flanking sequence: Indices 592595 -- 593094 ATATATATATATATATATATATATATATTTATATATTTATATATTTATATTTATTTATTTATTTA AGTACAAATAATGAATTCTTTTTCATACAACAAATATTAAAATGCAACTAAAAAGAAAAAGAAAA GAAAATTGTTATATATATTATATATAATTGAATATTCTTATATGTGTGTAGAAATTATAAAATCA TATTAGAATTTAATTCGAAAAAATAAAATAAATTAAAATGAAATAAATATGTGACATTAAATAAT AAAGGATAAATGAAATATATCATTTTACATTTTTTACTTTTTAGCATATTATGTTAATATATATA TATATATATATAAATATATATATATTATAAAAAGGAAAATGAACAAGAAGAATATGAGGTAATAA GAATTCTCACTAAGCTGATAAATAATATATATATTATATATATATATATATATATATATATATAT ATACATATATTTATTTATTTATTTATTTATTTATTACTAACAACA Right flanking sequence: Indices 593118 -- 593617 CATAAGATAAAATATTTATATTAATCATATATAATACTTTGACTTGTTGAACTTTTAAAGATATC ATAAAATATAAAAAAATATATAATTCATTTTAAATGGTTTTATATATAAGTGTATTTTTTTTTTT TTTATAAATAATAGAATTTTTATATATTCATTTTATATAAAAAAAAATATAACTGTAAAATTGTT TTATAACTTGTAATAAAACTATTATATAATGGTATTTATTATATGTACTGTTTATTCTTAATATT TTTTATTATATAATTTATATAATAATATTTTTATCAATATTATGAATAAAATTATATTCCTTCAT ATATTTTTTTTCTCTTTCATATGGTATTATTATTTATATAATTTATTTATTTATTAACTTTTTAT TTTTTATTATATTTTTAAATCTACCTACAAATAAAAATAAATATATATATAATATATAATATATA TATTTATATATAACTAATCGCATGTATATTTTCTTTATCAACATA Found at i:593492 original size:17 final size:15 Alignment explanation
Indices: 593472--593513 Score: 52 Period size: 15 Copynumber: 2.7 Consensus size: 15 593462 TATGGTATTA * 593472 TTATTTATATAATTTAT 1 TTATTTAT-TAACTT-T 593489 TTATTTATTAACTTT 1 TTATTTATTAACTTT * 593504 TTATTTTTTA 1 TTATTTATTA 593514 TTATATTTTT Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 15 10 0.43 16 5 0.22 17 8 0.35 ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69 Consensus pattern (15 bp): TTATTTATTAACTTT Left flanking sequence: Indices 592972 -- 593471 TATGAGGTAATAAGAATTCTCACTAAGCTGATAAATAATATATATATTATATATATATATATATA TATATATATATATATACATATATTTATTTATTTATTTATTTATTTATTACTAACAACAATAAAAT ACATATAAAATATATACATAAGATAAAATATTTATATTAATCATATATAATACTTTGACTTGTTG AACTTTTAAAGATATCATAAAATATAAAAAAATATATAATTCATTTTAAATGGTTTTATATATAA GTGTATTTTTTTTTTTTTTATAAATAATAGAATTTTTATATATTCATTTTATATAAAAAAAAATA TAACTGTAAAATTGTTTTATAACTTGTAATAAAACTATTATATAATGGTATTTATTATATGTACT GTTTATTCTTAATATTTTTTATTATATAATTTATATAATAATATTTTTATCAATATTATGAATAA AATTATATTCCTTCATATATTTTTTTTCTCTTTCATATGGTATTA Right flanking sequence: Indices 593514 -- 594013 TTATATTTTTAAATCTACCTACAAATAAAAATAAATATATATATAATATATAATATATATATTTA TATATAACTAATCGCATGTATATTTTCTTTATCAACATAATATCTTTTTGAGAACATGAAAATTA TTTTTATTAATAAATAAAATATATATTATAATCCTTCATAGGATATATAAATTTTTTTTACTAGT ATAATATATATATATATATATATTATATATAATATATATATAATATATATATAAATTCATCTTAT ATATAATACAATATAATAACAATATGCCCTATTTTTATATGCGATTTTTATTTAAAAAAAACAAA AAGAAATGAATACTTATTTTTTTTATTATGTATTATTTATTTTTTTTTTTTTTTATATGCCAACA TCTTTTTATTATATATTATATACAAGTGTATTTTATGACTGAAGGTTATATATATATATATTCCT TTATTTTGGTATGACAAATTAAAAAAAAAAAAAAAAAAGAGAATA Found at i:593515 original size:18 final size:19 Alignment explanation
Indices: 593484--593524 Score: 61 Period size: 18 Copynumber: 2.2 Consensus size: 19 593474 ATTTATATAA * 593484 TTTATTTATTTATTAACTT 1 TTTATTTATTTATTAAATT * 593503 TTTATTT-TTTATTATATT 1 TTTATTTATTTATTAAATT 593521 TTTA 1 TTTA 593525 AATCTACCTA Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 18 13 0.65 19 7 0.35 ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73 Consensus pattern (19 bp): TTTATTTATTTATTAAATT Left flanking sequence: Indices 592984 -- 593483 AGAATTCTCACTAAGCTGATAAATAATATATATATTATATATATATATATATATATATATATATA TATACATATATTTATTTATTTATTTATTTATTTATTACTAACAACAATAAAATACATATAAAATA TATACATAAGATAAAATATTTATATTAATCATATATAATACTTTGACTTGTTGAACTTTTAAAGA TATCATAAAATATAAAAAAATATATAATTCATTTTAAATGGTTTTATATATAAGTGTATTTTTTT TTTTTTTATAAATAATAGAATTTTTATATATTCATTTTATATAAAAAAAAATATAACTGTAAAAT TGTTTTATAACTTGTAATAAAACTATTATATAATGGTATTTATTATATGTACTGTTTATTCTTAA TATTTTTTATTATATAATTTATATAATAATATTTTTATCAATATTATGAATAAAATTATATTCCT TCATATATTTTTTTTCTCTTTCATATGGTATTATTATTTATATAA Right flanking sequence: Indices 593525 -- 594024 AATCTACCTACAAATAAAAATAAATATATATATAATATATAATATATATATTTATATATAACTAA TCGCATGTATATTTTCTTTATCAACATAATATCTTTTTGAGAACATGAAAATTATTTTTATTAAT AAATAAAATATATATTATAATCCTTCATAGGATATATAAATTTTTTTTACTAGTATAATATATAT ATATATATATATTATATATAATATATATATAATATATATATAAATTCATCTTATATATAATACAA TATAATAACAATATGCCCTATTTTTATATGCGATTTTTATTTAAAAAAAACAAAAAGAAATGAAT ACTTATTTTTTTTATTATGTATTATTTATTTTTTTTTTTTTTTATATGCCAACATCTTTTTATTA TATATTATATACAAGTGTATTTTATGACTGAAGGTTATATATATATATATTCCTTTATTTTGGTA TGACAAATTAAAAAAAAAAAAAAAAAAGAGAATAAAATAATATAT Found at i:593753 original size:39 final size:38 Alignment explanation
Indices: 593708--593791 Score: 124 Period size: 39 Copynumber: 2.2 Consensus size: 38 593698 TTTTTACTAG * * * 593708 TATAATATATATATATATATATATTATATATAATATATA 1 TATAATATATATATAAATACATATTATATATAATACA-A * * 593747 TATAATATATATATAAATTCATCTTATATATAATACAA 1 TATAATATATATATAAATACATATTATATATAATACAA 593785 TATAATA 1 TATAATA 593792 ACAATATGCC Statistics Matches: 40, Mismatches: 5, Indels: 1 0.87 0.11 0.02 Matches are distributed among these distances: 38 8 0.20 39 32 0.80 ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45 Consensus pattern (38 bp): TATAATATATATATAAATACATATTATATATAATACAA Left flanking sequence: Indices 593208 -- 593707 CATTTTAAATGGTTTTATATATAAGTGTATTTTTTTTTTTTTTATAAATAATAGAATTTTTATAT ATTCATTTTATATAAAAAAAAATATAACTGTAAAATTGTTTTATAACTTGTAATAAAACTATTAT ATAATGGTATTTATTATATGTACTGTTTATTCTTAATATTTTTTATTATATAATTTATATAATAA TATTTTTATCAATATTATGAATAAAATTATATTCCTTCATATATTTTTTTTCTCTTTCATATGGT ATTATTATTTATATAATTTATTTATTTATTAACTTTTTATTTTTTATTATATTTTTAAATCTACC TACAAATAAAAATAAATATATATATAATATATAATATATATATTTATATATAACTAATCGCATGT ATATTTTCTTTATCAACATAATATCTTTTTGAGAACATGAAAATTATTTTTATTAATAAATAAAA TATATATTATAATCCTTCATAGGATATATAAATTTTTTTTACTAG Right flanking sequence: Indices 593792 -- 594291 ACAATATGCCCTATTTTTATATGCGATTTTTATTTAAAAAAAACAAAAAGAAATGAATACTTATT TTTTTTATTATGTATTATTTATTTTTTTTTTTTTTTATATGCCAACATCTTTTTATTATATATTA TATACAAGTGTATTTTATGACTGAAGGTTATATATATATATATTCCTTTATTTTGGTATGACAAA TTAAAAAAAAAAAAAAAAAAGAGAATAAAATAATATATTATTATATTAAATAGATAAAAATTTTA AAATCTTATTATAAGTAAAAAATAAGTCTCAATATGTTTTTTGAAAATTCATGAAAATATGTAAA AATACGAAGAAAAATATTACCAAAAAAAAAAAAAAAAGGAAATAAAAAAAGAAAAAAAAAAAAAA AAAAAATTTTAAATATCACAAAGTATTTTAAATTTATAATAATATATTCATTTTATATTATTTAT TTGGCCATTGTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTAATA Found at i:593789 original size:10 final size:11 Alignment explanation
Indices: 593774--593798 Score: 43 Period size: 10 Copynumber: 2.4 Consensus size: 11 593764 TTCATCTTAT 593774 ATATAAT-ACA 1 ATATAATAACA 593784 ATATAATAACA 1 ATATAATAACA 593795 ATAT 1 ATAT 593799 GCCCTATTTT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 10 7 0.50 11 7 0.50 ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32 Consensus pattern (11 bp): ATATAATAACA Left flanking sequence: Indices 593274 -- 593773 TTCATTTTATATAAAAAAAAATATAACTGTAAAATTGTTTTATAACTTGTAATAAAACTATTATA TAATGGTATTTATTATATGTACTGTTTATTCTTAATATTTTTTATTATATAATTTATATAATAAT ATTTTTATCAATATTATGAATAAAATTATATTCCTTCATATATTTTTTTTCTCTTTCATATGGTA TTATTATTTATATAATTTATTTATTTATTAACTTTTTATTTTTTATTATATTTTTAAATCTACCT ACAAATAAAAATAAATATATATATAATATATAATATATATATTTATATATAACTAATCGCATGTA TATTTTCTTTATCAACATAATATCTTTTTGAGAACATGAAAATTATTTTTATTAATAAATAAAAT ATATATTATAATCCTTCATAGGATATATAAATTTTTTTTACTAGTATAATATATATATATATATA TATTATATATAATATATATATAATATATATATAAATTCATCTTAT Right flanking sequence: Indices 593799 -- 594298 GCCCTATTTTTATATGCGATTTTTATTTAAAAAAAACAAAAAGAAATGAATACTTATTTTTTTTA TTATGTATTATTTATTTTTTTTTTTTTTTATATGCCAACATCTTTTTATTATATATTATATACAA GTGTATTTTATGACTGAAGGTTATATATATATATATTCCTTTATTTTGGTATGACAAATTAAAAA AAAAAAAAAAAAAGAGAATAAAATAATATATTATTATATTAAATAGATAAAAATTTTAAAATCTT ATTATAAGTAAAAAATAAGTCTCAATATGTTTTTTGAAAATTCATGAAAATATGTAAAAATACGA AGAAAAATATTACCAAAAAAAAAAAAAAAAGGAAATAAAAAAAGAAAAAAAAAAAAAAAAAAAAT TTTAAATATCACAAAGTATTTTAAATTTATAATAATATATTCATTTTATATTATTTATTTGGCCA TTGTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTAATAACATACA Found at i:594274 original size:12 final size:12 Alignment explanation
Indices: 594257--594287 Score: 55 Period size: 12 Copynumber: 2.6 Consensus size: 12 594247 TTGGCCATTG 594257 TTTCTTTTTTTT 1 TTTCTTTTTTTT 594269 TTTCTTTTTTTT 1 TTTCTTTTTTTT * 594281 TTTTTTT 1 TTTCTTT 594288 AATAACATAC Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 12 18 1.00 ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94 Consensus pattern (12 bp): TTTCTTTTTTTT Left flanking sequence: Indices 593757 -- 594256 ATATAAATTCATCTTATATATAATACAATATAATAACAATATGCCCTATTTTTATATGCGATTTT TATTTAAAAAAAACAAAAAGAAATGAATACTTATTTTTTTTATTATGTATTATTTATTTTTTTTT TTTTTTATATGCCAACATCTTTTTATTATATATTATATACAAGTGTATTTTATGACTGAAGGTTA TATATATATATATTCCTTTATTTTGGTATGACAAATTAAAAAAAAAAAAAAAAAAGAGAATAAAA TAATATATTATTATATTAAATAGATAAAAATTTTAAAATCTTATTATAAGTAAAAAATAAGTCTC AATATGTTTTTTGAAAATTCATGAAAATATGTAAAAATACGAAGAAAAATATTACCAAAAAAAAA AAAAAAAGGAAATAAAAAAAGAAAAAAAAAAAAAAAAAAAATTTTAAATATCACAAAGTATTTTA AATTTATAATAATATATTCATTTTATATTATTTATTTGGCCATTG Right flanking sequence: Indices 594288 -- 594787 AATAACATACATTATTAAAATATATATATATAATATATATGTAAAATTTTATAATATCAATAATA TATATTATATATACTCATAAAAACATATATTTATATAATAAAATATAGGAAGCACAAAAAAATAG ATTCAATTTAATTATACATTTAAAAAAAGAAGCAAAAAAAAGTAATATAACACATGAACATAAAT AAATAAATAAATAAATAAATATATATATATATATATATATATATATATATATATCATATGTAAAC CATAAATATAAATAATAAATAAAAATATAATAAAAATTGATACAAAGGGAAAAATAAAATACATC AATATAAAGTATATATATTAATAAAGAATAATAGAGAAGCAGACATATATACCATTTTAACAAAA TAAAAAAAAAAAAATATAAAACAATAATAAAAATAATAATAACAAAATAATAAAAAAAAACTATA AAACAATTAATAAAAATAATAATAACAAAATAATAACAAAATATT Found at i:594494 original size:12 final size:12 Alignment explanation
Indices: 594477--594581 Score: 94 Period size: 12 Copynumber: 8.8 Consensus size: 12 594467 ACACATGAAC * * 594477 ATAAATAAATAA 1 ATATATAAATAT * * 594489 ATAAATAAATAA 1 ATATATAAATAT * 594501 ATATATATATAT 1 ATATATAAATAT * 594513 ATATATATATAT 1 ATATATAAATAT * 594525 ATATATATATAT 1 ATATATAAATAT * * 594537 CATATGTAAACCAT 1 -ATATATAAA-TAT * 594551 AAATATAAATA- 1 ATATATAAATAT * * 594562 ATAAATAAAAAT 1 ATATATAAATAT 594574 ATA-ATAAA 1 ATATATAAA 594582 AATTGATACA Statistics Matches: 78, Mismatches: 12, Indels: 7 0.80 0.12 0.07 Matches are distributed among these distances: 11 13 0.17 12 49 0.63 13 14 0.18 14 2 0.03 ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34 Consensus pattern (12 bp): ATATATAAATAT Left flanking sequence: Indices 593977 -- 594476 GTATGACAAATTAAAAAAAAAAAAAAAAAAGAGAATAAAATAATATATTATTATATTAAATAGAT AAAAATTTTAAAATCTTATTATAAGTAAAAAATAAGTCTCAATATGTTTTTTGAAAATTCATGAA AATATGTAAAAATACGAAGAAAAATATTACCAAAAAAAAAAAAAAAAGGAAATAAAAAAAGAAAA AAAAAAAAAAAAAAAATTTTAAATATCACAAAGTATTTTAAATTTATAATAATATATTCATTTTA TATTATTTATTTGGCCATTGTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTAATAACATACATTA TTAAAATATATATATATAATATATATGTAAAATTTTATAATATCAATAATATATATTATATATAC TCATAAAAACATATATTTATATAATAAAATATAGGAAGCACAAAAAAATAGATTCAATTTAATTA TACATTTAAAAAAAGAAGCAAAAAAAAGTAATATAACACATGAAC Right flanking sequence: Indices 594582 -- 595081 AATTGATACAAAGGGAAAAATAAAATACATCAATATAAAGTATATATATTAATAAAGAATAATAG AGAAGCAGACATATATACCATTTTAACAAAATAAAAAAAAAAAAATATAAAACAATAATAAAAAT AATAATAACAAAATAATAAAAAAAAACTATAAAACAATTAATAAAAATAATAATAACAAAATAAT AACAAAATATTAACACACATAACATATTATAAAAGGGTATAAAATTAAAAGAAAGGGGGGAAATA ATAAATTCACACTTACCCAAATCGTAAGCTTTCTCTAAATAGTAACTATATACATATATTTTTTT CCCCCTTACACAAAATAAATACAAAAAATCAACAAATTATTATAATACATTATATTGTACTATAT TATAATAAATTATGTTTTTTTTTTTTTATATATACGCCTTGTAGTGATATAATATATATATATAT ATATATATATATATATATATATTTATTTATACTCCCTTTTTAATA Found at i:594559 original size:13 final size:13 Alignment explanation
Indices: 594543--594572 Score: 39 Period size: 13 Copynumber: 2.3 Consensus size: 13 594533 ATATCATATG * 594543 TAAACCATAAATA 1 TAAACAATAAATA * 594556 TAAATAATAAATA 1 TAAACAATAAATA * 594569 AAAA 1 TAAA 594573 TATAATAAAA Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 13 14 1.00 ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23 Consensus pattern (13 bp): TAAACAATAAATA Left flanking sequence: Indices 594043 -- 594542 AAAATTTTAAAATCTTATTATAAGTAAAAAATAAGTCTCAATATGTTTTTTGAAAATTCATGAAA ATATGTAAAAATACGAAGAAAAATATTACCAAAAAAAAAAAAAAAAGGAAATAAAAAAAGAAAAA AAAAAAAAAAAAAAATTTTAAATATCACAAAGTATTTTAAATTTATAATAATATATTCATTTTAT ATTATTTATTTGGCCATTGTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTAATAACATACATTAT TAAAATATATATATATAATATATATGTAAAATTTTATAATATCAATAATATATATTATATATACT CATAAAAACATATATTTATATAATAAAATATAGGAAGCACAAAAAAATAGATTCAATTTAATTAT ACATTTAAAAAAAGAAGCAAAAAAAAGTAATATAACACATGAACATAAATAAATAAATAAATAAA TAAATATATATATATATATATATATATATATATATATATCATATG Right flanking sequence: Indices 594573 -- 595072 TATAATAAAAATTGATACAAAGGGAAAAATAAAATACATCAATATAAAGTATATATATTAATAAA GAATAATAGAGAAGCAGACATATATACCATTTTAACAAAATAAAAAAAAAAAAATATAAAACAAT AATAAAAATAATAATAACAAAATAATAAAAAAAAACTATAAAACAATTAATAAAAATAATAATAA CAAAATAATAACAAAATATTAACACACATAACATATTATAAAAGGGTATAAAATTAAAAGAAAGG GGGGAAATAATAAATTCACACTTACCCAAATCGTAAGCTTTCTCTAAATAGTAACTATATACATA TATTTTTTTCCCCCTTACACAAAATAAATACAAAAAATCAACAAATTATTATAATACATTATATT GTACTATATTATAATAAATTATGTTTTTTTTTTTTTATATATACGCCTTGTAGTGATATAATATA TATATATATATATATATATATATATATATATTTATTTATACTCCC Found at i:594723 original size:47 final size:48 Alignment explanation
Indices: 594670--594783 Score: 200 Period size: 48 Copynumber: 2.4 Consensus size: 48 594660 TATACCATTT * 594670 TAACAAAATAAAAAAAAAAAAATATAAAACAA-TAATAAAAATAATAA 1 TAACAAAATAATAAAAAAAAAATATAAAACAATTAATAAAAATAATAA * 594717 TAACAAAATAATAAAAAAAAACTATAAAACAATTAATAAAAATAATAA 1 TAACAAAATAATAAAAAAAAAATATAAAACAATTAATAAAAATAATAA * 594765 TAACAAAATAATAACAAAA 1 TAACAAAATAATAAAAAAA 594784 TATTAACACA Statistics Matches: 63, Mismatches: 3, Indels: 1 0.94 0.04 0.01 Matches are distributed among these distances: 47 30 0.48 48 33 0.52 ACGTcount: A:0.75, C:0.06, G:0.00, T:0.18 Consensus pattern (48 bp): TAACAAAATAATAAAAAAAAAATATAAAACAATTAATAAAAATAATAA Left flanking sequence: Indices 594170 -- 594669 AAAAAAAAAAAAAAAAAATTTTAAATATCACAAAGTATTTTAAATTTATAATAATATATTCATTT TATATTATTTATTTGGCCATTGTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTAATAACATACAT TATTAAAATATATATATATAATATATATGTAAAATTTTATAATATCAATAATATATATTATATAT ACTCATAAAAACATATATTTATATAATAAAATATAGGAAGCACAAAAAAATAGATTCAATTTAAT TATACATTTAAAAAAAGAAGCAAAAAAAAGTAATATAACACATGAACATAAATAAATAAATAAAT AAATAAATATATATATATATATATATATATATATATATATATCATATGTAAACCATAAATATAAA TAATAAATAAAAATATAATAAAAATTGATACAAAGGGAAAAATAAAATACATCAATATAAAGTAT ATATATTAATAAAGAATAATAGAGAAGCAGACATATATACCATTT Right flanking sequence: Indices 594784 -- 595283 TATTAACACACATAACATATTATAAAAGGGTATAAAATTAAAAGAAAGGGGGGAAATAATAAATT CACACTTACCCAAATCGTAAGCTTTCTCTAAATAGTAACTATATACATATATTTTTTTCCCCCTT ACACAAAATAAATACAAAAAATCAACAAATTATTATAATACATTATATTGTACTATATTATAATA AATTATGTTTTTTTTTTTTTATATATACGCCTTGTAGTGATATAATATATATATATATATATATA TATATATATATATATTTATTTATACTCCCTTTTTAATACCAATTGTTCAACATTTGCATAATAAA AAATGTGCCATATTTATTTATCATATTGCCATTTTTTTTTTTATTATTTGATTATTCATCTGCTA ACCACTCAGCAAAAGCTTTTAATCGCATGTTGTTTTTCAAAAACTCATCCGATTGATTTTTATTT ATCCACCTATAAATAAATATAAAAATATACACATATATGTATGTA Found at i:594973 original size:15 final size:15 Alignment explanation
Indices: 594944--594975 Score: 43 Period size: 15 Copynumber: 2.1 Consensus size: 15 594934 ATCAACAAAT 594944 TATTATAATACATTA 1 TATTATAATACATTA * * * 594959 TATTGTACTATATTA 1 TATTATAATACATTA 594974 TA 1 TA 594976 ATAAATTATG Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 15 14 1.00 ACGTcount: A:0.41, C:0.06, G:0.03, T:0.50 Consensus pattern (15 bp): TATTATAATACATTA Left flanking sequence: Indices 594444 -- 594943 AAGAAGCAAAAAAAAGTAATATAACACATGAACATAAATAAATAAATAAATAAATAAATATATAT ATATATATATATATATATATATATATATCATATGTAAACCATAAATATAAATAATAAATAAAAAT ATAATAAAAATTGATACAAAGGGAAAAATAAAATACATCAATATAAAGTATATATATTAATAAAG AATAATAGAGAAGCAGACATATATACCATTTTAACAAAATAAAAAAAAAAAAATATAAAACAATA ATAAAAATAATAATAACAAAATAATAAAAAAAAACTATAAAACAATTAATAAAAATAATAATAAC AAAATAATAACAAAATATTAACACACATAACATATTATAAAAGGGTATAAAATTAAAAGAAAGGG GGGAAATAATAAATTCACACTTACCCAAATCGTAAGCTTTCTCTAAATAGTAACTATATACATAT ATTTTTTTCCCCCTTACACAAAATAAATACAAAAAATCAACAAAT Right flanking sequence: Indices 594976 -- 595475 ATAAATTATGTTTTTTTTTTTTTATATATACGCCTTGTAGTGATATAATATATATATATATATAT ATATATATATATATATATTTATTTATACTCCCTTTTTAATACCAATTGTTCAACATTTGCATAAT AAAAAATGTGCCATATTTATTTATCATATTGCCATTTTTTTTTTTATTATTTGATTATTCATCTG CTAACCACTCAGCAAAAGCTTTTAATCGCATGTTGTTTTTCAAAAACTCATCCGATTGATTTTTA TTTATCCACCTATAAATAAATATAAAAATATACACATATATGTATGTACATATTTAAACATATAT ACATGTAAATACATATATAGCATTTTTATAATACATAATCACATAATTTGATACATAAAAATATT AAGTTGTCTTTGTAATTTTTTTTTTCTTTTTTATTTTTTTTTCTTTTTTATTTTTTTTTTTTCTT TTTGTATTACTCGTTGAAATAGTTAAATTCGAATATGTCCGAGTG Found at i:595401 original size:18 final size:18 Alignment explanation
Indices: 595372--595425 Score: 87 Period size: 17 Copynumber: 3.1 Consensus size: 18 595362 TATTAAGTTG * * 595372 TCTTTGTAATTTTTTTTT 1 TCTTTTTTATTTTTTTTT 595390 TCTTTTTTA-TTTTTTTT 1 TCTTTTTTATTTTTTTTT 595407 TCTTTTTTATTTTTTTTT 1 TCTTTTTTATTTTTTTTT 595425 T 1 T 595426 TTCTTTTTGT Statistics Matches: 33, Mismatches: 2, Indels: 2 0.89 0.05 0.05 Matches are distributed among these distances: 17 17 0.52 18 16 0.48 ACGTcount: A:0.07, C:0.06, G:0.02, T:0.85 Consensus pattern (18 bp): TCTTTTTTATTTTTTTTT Left flanking sequence: Indices 594872 -- 595371 TTCTCTAAATAGTAACTATATACATATATTTTTTTCCCCCTTACACAAAATAAATACAAAAAATC AACAAATTATTATAATACATTATATTGTACTATATTATAATAAATTATGTTTTTTTTTTTTTATA TATACGCCTTGTAGTGATATAATATATATATATATATATATATATATATATATATATTTATTTAT ACTCCCTTTTTAATACCAATTGTTCAACATTTGCATAATAAAAAATGTGCCATATTTATTTATCA TATTGCCATTTTTTTTTTTATTATTTGATTATTCATCTGCTAACCACTCAGCAAAAGCTTTTAAT CGCATGTTGTTTTTCAAAAACTCATCCGATTGATTTTTATTTATCCACCTATAAATAAATATAAA AATATACACATATATGTATGTACATATTTAAACATATATACATGTAAATACATATATAGCATTTT TATAATACATAATCACATAATTTGATACATAAAAATATTAAGTTG Right flanking sequence: Indices 595426 -- 595925 TTCTTTTTGTATTACTCGTTGAAATAGTTAAATTCGAATATGTCCGAGTGATAGATATACTCGAA TGCATTACACAATTTATCAGATCCAAAGATATTATTTTTTATATTAGAAGTTAGATACTGCTTTT TTGAATAATCTAATATTAAATCATATAAAGTTTCATAATAACATTGATCTTCTAATAGGAAGGAT GAAAATAACATATCTAACTTTGCATTATCAAAGTTTTCTATCCAAGATTCTTTATCAAATGGTAA TTGATTTATATATTCCCATATTATAGGGAAGATACCCACAAGGACATCAAGATCTGTATAATTTA ATGAAAGTCTAAAACTTTTCATTTCTAGGATTTTATGACTCATAAATTGTGGTTTATTAATAGCT TCTTTACATAATAAAGAGATTTCTTTAGAGAAAATATTCTTTTCATTATCCATATTAATATCATT AAAATGTTTATTAATATCACTCATATTTACTGAATCTTCATTAAA Found at i:595406 original size:20 final size:20 Alignment explanation
Indices: 595381--595438 Score: 86 Period size: 17 Copynumber: 3.0 Consensus size: 20 595371 GTCTTTGTAA 595381 TTTTTTTTTTCTTTTTTA-- 1 TTTTTTTTTTCTTTTTTATT 595399 -TTTTTTTTTCTTTTTTATT 1 TTTTTTTTTTCTTTTTTATT 595418 TTTTTTTTTTCTTTTTGTATT 1 TTTTTTTTTTCTTTTT-TATT 595439 ACTCGTTGAA Statistics Matches: 36, Mismatches: 0, Indels: 5 0.88 0.00 0.12 Matches are distributed among these distances: 17 17 0.47 20 15 0.42 21 4 0.11 ACGTcount: A:0.05, C:0.05, G:0.02, T:0.88 Consensus pattern (20 bp): TTTTTTTTTTCTTTTTTATT Left flanking sequence: Indices 594881 -- 595380 TAGTAACTATATACATATATTTTTTTCCCCCTTACACAAAATAAATACAAAAAATCAACAAATTA TTATAATACATTATATTGTACTATATTATAATAAATTATGTTTTTTTTTTTTTATATATACGCCT TGTAGTGATATAATATATATATATATATATATATATATATATATATATTTATTTATACTCCCTTT TTAATACCAATTGTTCAACATTTGCATAATAAAAAATGTGCCATATTTATTTATCATATTGCCAT TTTTTTTTTTATTATTTGATTATTCATCTGCTAACCACTCAGCAAAAGCTTTTAATCGCATGTTG TTTTTCAAAAACTCATCCGATTGATTTTTATTTATCCACCTATAAATAAATATAAAAATATACAC ATATATGTATGTACATATTTAAACATATATACATGTAAATACATATATAGCATTTTTATAATACA TAATCACATAATTTGATACATAAAAATATTAAGTTGTCTTTGTAA Right flanking sequence: Indices 595439 -- 595938 ACTCGTTGAAATAGTTAAATTCGAATATGTCCGAGTGATAGATATACTCGAATGCATTACACAAT TTATCAGATCCAAAGATATTATTTTTTATATTAGAAGTTAGATACTGCTTTTTTGAATAATCTAA TATTAAATCATATAAAGTTTCATAATAACATTGATCTTCTAATAGGAAGGATGAAAATAACATAT CTAACTTTGCATTATCAAAGTTTTCTATCCAAGATTCTTTATCAAATGGTAATTGATTTATATAT TCCCATATTATAGGGAAGATACCCACAAGGACATCAAGATCTGTATAATTTAATGAAAGTCTAAA ACTTTTCATTTCTAGGATTTTATGACTCATAAATTGTGGTTTATTAATAGCTTCTTTACATAATA AAGAGATTTCTTTAGAGAAAATATTCTTTTCATTATCCATATTAATATCATTAAAATGTTTATTA ATATCACTCATATTTACTGAATCTTCATTAAATAATTCTGCTCCT Found at i:597089 original size:18 final size:18 Alignment explanation
Indices: 597048--597091 Score: 53 Period size: 18 Copynumber: 2.4 Consensus size: 18 597038 TTATAATTTT *** 597048 ACAATTTTTTCCTATCTT 1 ACAATTTTTTCCTATAAC 597066 ACAATTTTTTCCTATAAC 1 ACAATTTTTTCCTATAAC ** 597084 TGAATTTT 1 ACAATTTT 597092 CAATAGTACT Statistics Matches: 21, Mismatches: 5, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 18 21 1.00 ACGTcount: A:0.27, C:0.18, G:0.02, T:0.52 Consensus pattern (18 bp): ACAATTTTTTCCTATAAC Left flanking sequence: Indices 596548 -- 597047 TCTCTTTTTATATTTTCCTGATCATTCAGAATGTTACTATTAGCTACCTCCTTAGGATTATCAAA ACTTTTCTCATCAATAATTACATAATCATTTTCTTCCCTTTGCATATGTTGATGGCATATAATAT CAGAAACTTCCTTTTCATTTTCAAAAGTATCTTGATTATCTATAGTGTCTTCTTCCTTAACATTG GTTATGTCATTTTGTGATTCTTCGATTTCACGAACTTTTCGATGTTCTTCTAATAGTATATCTTC TTCTTTATTTTTTTTTTCTAATTGTAATTTATCTTTAACATTATTTGTATAATATGCACTCAGTC TAGTATATTTCGGAATTTCGATATTACATGGTATATTTATATTCTTTCCAAGAACACAACATTCA TCAATAAATACGTTCTCATTTATAATTACGTTTTCATAAATAAATGAACTTAATATACTAACATT ATCCTTAATAATACAATTATTAGCTATTACGGTATTTATAATTTT Right flanking sequence: Indices 597092 -- 597591 CAATAGTACTATTATCTAATATTTCACTAAATTTCTCTACTAAAACAATTTTATATAATTTACAT GTATCATGAACTATTGCATTTTTGTGTTTATAAAAACCTGGTTCAGTCAAAACGCGTTTTGGCTG TTCAGGAAGTAAATGATAAGCATTAGCAAGAAAAGGATGTACATTTCTTTCAATTAACATTTTAA AAAATTTAAAATATATTCGAAAATCTGATAAAGTAGTAATGATATTATTACATTCGGTATAATTA TAATCACCATTTATTTCATGAACATATATCTCCTCTATTTTTATTTCTTGTTTAAGTATATTATA TATAAAATCTTTTTTTATACATTGATAATCAAAATTATCTTCAAATAATTTCAGAACTTGTGGAG TAATTATAAATATATTTGGTATTATAAGATCATATGAAATGATAATTGAATTTGAACAAGCATTT AGGATGAAAGAAGCACGCCTATTCCTACTATAATGATGAATATCT Found at i:597125 original size:10 final size:11 Alignment explanation
Indices: 597107--597130 Score: 34 Period size: 10 Copynumber: 2.3 Consensus size: 11 597097 GTACTATTAT 597107 CTAATATTTCA 1 CTAATATTTCA * 597118 CTAA-ATTTCT 1 CTAATATTTCA 597128 CTA 1 CTA 597131 CTAAAACAAT Statistics Matches: 12, Mismatches: 1, Indels: 1 0.86 0.07 0.07 Matches are distributed among these distances: 10 8 0.67 11 4 0.33 ACGTcount: A:0.33, C:0.21, G:0.00, T:0.46 Consensus pattern (11 bp): CTAATATTTCA Left flanking sequence: Indices 596607 -- 597106 ATCAAAACTTTTCTCATCAATAATTACATAATCATTTTCTTCCCTTTGCATATGTTGATGGCATA TAATATCAGAAACTTCCTTTTCATTTTCAAAAGTATCTTGATTATCTATAGTGTCTTCTTCCTTA ACATTGGTTATGTCATTTTGTGATTCTTCGATTTCACGAACTTTTCGATGTTCTTCTAATAGTAT ATCTTCTTCTTTATTTTTTTTTTCTAATTGTAATTTATCTTTAACATTATTTGTATAATATGCAC TCAGTCTAGTATATTTCGGAATTTCGATATTACATGGTATATTTATATTCTTTCCAAGAACACAA CATTCATCAATAAATACGTTCTCATTTATAATTACGTTTTCATAAATAAATGAACTTAATATACT AACATTATCCTTAATAATACAATTATTAGCTATTACGGTATTTATAATTTTACAATTTTTTCCTA TCTTACAATTTTTTCCTATAACTGAATTTTCAATAGTACTATTAT Right flanking sequence: Indices 597131 -- 597630 CTAAAACAATTTTATATAATTTACATGTATCATGAACTATTGCATTTTTGTGTTTATAAAAACCT GGTTCAGTCAAAACGCGTTTTGGCTGTTCAGGAAGTAAATGATAAGCATTAGCAAGAAAAGGATG TACATTTCTTTCAATTAACATTTTAAAAAATTTAAAATATATTCGAAAATCTGATAAAGTAGTAA TGATATTATTACATTCGGTATAATTATAATCACCATTTATTTCATGAACATATATCTCCTCTATT TTTATTTCTTGTTTAAGTATATTATATATAAAATCTTTTTTTATACATTGATAATCAAAATTATC TTCAAATAATTTCAGAACTTGTGGAGTAATTATAAATATATTTGGTATTATAAGATCATATGAAA TGATAATTGAATTTGAACAAGCATTTAGGATGAAAGAAGCACGCCTATTCCTACTATAATGATGA ATATCTATGTCATGATAATTATTAAAAAGTTCACGATAATCCATA Found at i:597665 original size:36 final size:36 Alignment explanation
Indices: 597625--597702 Score: 89 Period size: 36 Copynumber: 2.2 Consensus size: 36 597615 TTCACGATAA 597625 TCCATACCATGAGAATTTGTACG-TAAG-TTATGACAT 1 TCCATACCATGAGAATTT-T-CGATAAGATTATGACAT * * *** 597661 TCCATATCTTGATGGTTTTCGATAAGATTATGACAT 1 TCCATACCATGAGAATTTTCGATAAGATTATGACAT 597697 TCCATA 1 TCCATA 597703 TTATGAAGAT Statistics Matches: 35, Mismatches: 5, Indels: 4 0.80 0.11 0.09 Matches are distributed among these distances: 34 2 0.06 35 5 0.14 36 28 0.80 ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37 Consensus pattern (36 bp): TCCATACCATGAGAATTTTCGATAAGATTATGACAT Left flanking sequence: Indices 597125 -- 597624 TCTCTACTAAAACAATTTTATATAATTTACATGTATCATGAACTATTGCATTTTTGTGTTTATAA AAACCTGGTTCAGTCAAAACGCGTTTTGGCTGTTCAGGAAGTAAATGATAAGCATTAGCAAGAAA AGGATGTACATTTCTTTCAATTAACATTTTAAAAAATTTAAAATATATTCGAAAATCTGATAAAG TAGTAATGATATTATTACATTCGGTATAATTATAATCACCATTTATTTCATGAACATATATCTCC TCTATTTTTATTTCTTGTTTAAGTATATTATATATAAAATCTTTTTTTATACATTGATAATCAAA ATTATCTTCAAATAATTTCAGAACTTGTGGAGTAATTATAAATATATTTGGTATTATAAGATCAT ATGAAATGATAATTGAATTTGAACAAGCATTTAGGATGAAAGAAGCACGCCTATTCCTACTATAA TGATGAATATCTATGTCATGATAATTATTAAAAAGTTCACGATAA Right flanking sequence: Indices 597703 -- 598202 TTATGAAGATTATCCATATGGTAATTATTACTTCTATGATAAATGCTCTCCCTTGGGTATATACT ACCCCTTGTATATATACTGTCTCTTGGGTATATGCTGTCTCTTGGGTATATACTATCTCTTGGAT ATATACTATCTCTTGGATATATGCTGTCTCTTGGGAAAATACTATCTCTGGTGTAAAAACTATCT CTTGGAAAAACACTATCCCTATGATAAACAGTACCCCTTGAATAAAGACTACCTCTACGATTATT ATTATTATTATTATTATTATTATTATTATTATTATTATACATATTATTATATCCATCAACATTAT GATCATCGTCCATATTAACATAGTGATGGTGATGATGATGATTATTAATTAAATCCTTATTTCCT CCTTTGAATAAACCCTTTTCTTCATATCTACAACCTTTTCTATCTTTTATATTTATATCTTTAAA TATATCATTTGTTAATGTAAAATGTTTCTTTTTTTTTAATGGTTC Found at i:597775 original size:18 final size:18 Alignment explanation
Indices: 597754--597902 Score: 179 Period size: 18 Copynumber: 8.3 Consensus size: 18 597744 AATGCTCTCC * * 597754 CTTGGGTATATACTACCC 1 CTTGGGTATATACTATCT ** * 597772 CTTGTATATATACTGTCT 1 CTTGGGTATATACTATCT * * 597790 CTTGGGTATATGCTGTCT 1 CTTGGGTATATACTATCT 597808 CTTGGGTATATACTATCT 1 CTTGGGTATATACTATCT * 597826 CTTGGATATATACTATCT 1 CTTGGGTATATACTATCT * * * 597844 CTTGGATATATGCTGTCT 1 CTTGGGTATATACTATCT * * 597862 CTTGGGAAAATACTATCT 1 CTTGGGTATATACTATCT * * * * 597880 CTGGTGTAAAAACTATCT 1 CTTGGGTATATACTATCT 597898 CTTGG 1 CTTGG 597903 AAAAACACTA Statistics Matches: 107, Mismatches: 24, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 18 107 1.00 ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41 Consensus pattern (18 bp): CTTGGGTATATACTATCT Left flanking sequence: Indices 597254 -- 597753 AAGGATGTACATTTCTTTCAATTAACATTTTAAAAAATTTAAAATATATTCGAAAATCTGATAAA GTAGTAATGATATTATTACATTCGGTATAATTATAATCACCATTTATTTCATGAACATATATCTC CTCTATTTTTATTTCTTGTTTAAGTATATTATATATAAAATCTTTTTTTATACATTGATAATCAA AATTATCTTCAAATAATTTCAGAACTTGTGGAGTAATTATAAATATATTTGGTATTATAAGATCA TATGAAATGATAATTGAATTTGAACAAGCATTTAGGATGAAAGAAGCACGCCTATTCCTACTATA ATGATGAATATCTATGTCATGATAATTATTAAAAAGTTCACGATAATCCATACCATGAGAATTTG TACGTAAGTTATGACATTCCATATCTTGATGGTTTTCGATAAGATTATGACATTCCATATTATGA AGATTATCCATATGGTAATTATTACTTCTATGATAAATGCTCTCC Right flanking sequence: Indices 597903 -- 598402 AAAAACACTATCCCTATGATAAACAGTACCCCTTGAATAAAGACTACCTCTACGATTATTATTAT TATTATTATTATTATTATTATTATTATTATTATACATATTATTATATCCATCAACATTATGATCA TCGTCCATATTAACATAGTGATGGTGATGATGATGATTATTAATTAAATCCTTATTTCCTCCTTT GAATAAACCCTTTTCTTCATATCTACAACCTTTTCTATCTTTTATATTTATATCTTTAAATATAT CATTTGTTAATGTAAAATGTTTCTTTTTTTTTAATGGTTCAAATAATAAAAGTTTAAATGTAAAA TTATCATATGCTAAAACATAATCATCATTGTGCGATTTATTTTCCGAACTACAATGTGATAAAAT TAACGTCATAATTTGATTTTTACATTTTTCTTTATTAGTAAAATGAGCTTTAATAATGTCTTTCA CATTAGCTATTGGAATAGTATCTGAAAGTAATAATAATATATCAT Found at i:597835 original size:54 final size:54 Alignment explanation
Indices: 597740--597903 Score: 230 Period size: 54 Copynumber: 3.0 Consensus size: 54 597730 TTACTTCTAT * * * * * * 597740 GATAAATGCTCTCCCTTGGGTATATACTACCCCTTGTATATATACTGTCTCTTG 1 GATATATGCTGTCTCTTGGGTATATACTATCTCTTGTATATATACTATCTCTTG * * 597794 GGTATATGCTGTCTCTTGGGTATATACTATCTCTTGGATATATACTATCTCTTG 1 GATATATGCTGTCTCTTGGGTATATACTATCTCTTGTATATATACTATCTCTTG * * * * * * 597848 GATATATGCTGTCTCTTGGGAAAATACTATCTCTGGTGTAAAAACTATCTCTTG 1 GATATATGCTGTCTCTTGGGTATATACTATCTCTTGTATATATACTATCTCTTG 597902 GA 1 GA 597904 AAAACACTAT Statistics Matches: 94, Mismatches: 16, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 54 94 1.00 ACGTcount: A:0.24, C:0.19, G:0.18, T:0.40 Consensus pattern (54 bp): GATATATGCTGTCTCTTGGGTATATACTATCTCTTGTATATATACTATCTCTTG Left flanking sequence: Indices 597240 -- 597739 AGCATTAGCAAGAAAAGGATGTACATTTCTTTCAATTAACATTTTAAAAAATTTAAAATATATTC GAAAATCTGATAAAGTAGTAATGATATTATTACATTCGGTATAATTATAATCACCATTTATTTCA TGAACATATATCTCCTCTATTTTTATTTCTTGTTTAAGTATATTATATATAAAATCTTTTTTTAT ACATTGATAATCAAAATTATCTTCAAATAATTTCAGAACTTGTGGAGTAATTATAAATATATTTG GTATTATAAGATCATATGAAATGATAATTGAATTTGAACAAGCATTTAGGATGAAAGAAGCACGC CTATTCCTACTATAATGATGAATATCTATGTCATGATAATTATTAAAAAGTTCACGATAATCCAT ACCATGAGAATTTGTACGTAAGTTATGACATTCCATATCTTGATGGTTTTCGATAAGATTATGAC ATTCCATATTATGAAGATTATCCATATGGTAATTATTACTTCTAT Right flanking sequence: Indices 597904 -- 598403 AAAACACTATCCCTATGATAAACAGTACCCCTTGAATAAAGACTACCTCTACGATTATTATTATT ATTATTATTATTATTATTATTATTATTATTATACATATTATTATATCCATCAACATTATGATCAT CGTCCATATTAACATAGTGATGGTGATGATGATGATTATTAATTAAATCCTTATTTCCTCCTTTG AATAAACCCTTTTCTTCATATCTACAACCTTTTCTATCTTTTATATTTATATCTTTAAATATATC ATTTGTTAATGTAAAATGTTTCTTTTTTTTTAATGGTTCAAATAATAAAAGTTTAAATGTAAAAT TATCATATGCTAAAACATAATCATCATTGTGCGATTTATTTTCCGAACTACAATGTGATAAAATT AACGTCATAATTTGATTTTTACATTTTTCTTTATTAGTAAAATGAGCTTTAATAATGTCTTTCAC ATTAGCTATTGGAATAGTATCTGAAAGTAATAATAATATATCATT Found at i:598817 original size:24 final size:24 Alignment explanation
Indices: 598774--598864 Score: 108 Period size: 24 Copynumber: 3.9 Consensus size: 24 598764 TTTCATTTTC 598774 AAAAAAAAAA-AAA-AA-A-AAAA 1 AAAAAAAAAATAAATAATATAAAA * 598794 AAAAAAAAATTAAATAATATAAAA 1 AAAAAAAAAATAAATAATATAAAA * * 598818 AAAAAAAAAATAAAAAAAATAAAA 1 AAAAAAAAAATAAATAATATAAAA * 598842 AAATAAATAAATAAATAAATATA 1 AAA-AAAAAAATAAAT-AATATA 598865 TATATATATA Statistics Matches: 58, Mismatches: 7, Indels: 6 0.82 0.10 0.08 Matches are distributed among these distances: 20 9 0.16 21 3 0.05 22 2 0.03 23 1 0.02 24 28 0.48 25 10 0.17 26 5 0.09 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (24 bp): AAAAAAAAAATAAATAATATAAAA Left flanking sequence: Indices 598274 -- 598773 AACTACAATGTGATAAAATTAACGTCATAATTTGATTTTTACATTTTTCTTTATTAGTAAAATGA GCTTTAATAATGTCTTTCACATTAGCTATTGGAATAGTATCTGAAAGTAATAATAATATATCATT GTATACTTCAACACTCTTTTTAAAGTCTCTTAATGCATCTCCTAAAGTTTTTACTTTCTTATTCA TTTTTATTATTTCAATATCTAAATCATTATATCTCTTCTTACTTCTTTGAAACTTCTCTATATAA TCCAATAATTCATTTTCATGATGAGTTACAACGACATATATCTTCTTTACATTATTCTGTTTAAA AAAATGTAACTGGTAATCAATTAAACATAAACCATTCATAGGTAAAAAAAAACGAAGACTTTCGC TAGTCAAGGGTTCAAATACTTCATCAAAATTGTTTTCAATTAATAACCCTATTAAATTTTTCTTC TCTTCTTCATAACATAGGTTAAAATCGACTTCCTTTTTCATTTTC Right flanking sequence: Indices 598865 -- 599364 TATATATATAACAGAAAAAAGAAAAATCTAATTATATATATAAATACTAATTATTTCTTTTGTCA TCTATAAATTATTCTTTTATTTCTTATTATTTGGAAAATTTTTATTCATCTAAATATGCAAATAA TGCATAATGTATATATTGAAATATATATATATATATATATATATATATGTATATATTTATGTATT TATTTATTTTTTTTTTTTCTTGTCCTTGATATATAGGTCAATGGGTAATAATATTTCCCAAATAT ATATTTTACGTAATTAAAAAAATATATAATATATATATAATAAATATATTATATTTTCTTGTTTT TTTTTTGCTATTTGCTCGTTATATATTATGAAGAAGGCCTTAAAAATATATAATCAATTAATTTT ATATTTATATCTTTTTACATATATATAATTTTTTTTAACTCTTCATTGTTTCTCCTCGCTTTAAA AAAAAAGAAAAAATAATAATAATAATAAATTTGTTAAAAAGTTAT Found at i:598823 original size:34 final size:32 Alignment explanation
Indices: 598774--598860 Score: 116 Period size: 33 Copynumber: 2.7 Consensus size: 32 598764 TTTCATTTTC * 598774 AAAAAAA-AAAAAAAAAAAAAAAAAAAAAATT 1 AAAAAAATAAAAAAAAAAAAAAAAAAAAAAAT * * 598805 AAATAATATAAAAAAAAAAAAAATAAAAAAAAT 1 AAA-AAAATAAAAAAAAAAAAAAAAAAAAAAAT * * * 598838 AAAAAAATAAATAAATAAATAAA 1 AAAAAAATAAAAAAAAAAAAAAA 598861 TATATATATA Statistics Matches: 46, Mismatches: 8, Indels: 3 0.81 0.14 0.05 Matches are distributed among these distances: 31 3 0.07 32 18 0.39 33 25 0.54 ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13 Consensus pattern (32 bp): AAAAAAATAAAAAAAAAAAAAAAAAAAAAAAT Left flanking sequence: Indices 598274 -- 598773 AACTACAATGTGATAAAATTAACGTCATAATTTGATTTTTACATTTTTCTTTATTAGTAAAATGA GCTTTAATAATGTCTTTCACATTAGCTATTGGAATAGTATCTGAAAGTAATAATAATATATCATT GTATACTTCAACACTCTTTTTAAAGTCTCTTAATGCATCTCCTAAAGTTTTTACTTTCTTATTCA TTTTTATTATTTCAATATCTAAATCATTATATCTCTTCTTACTTCTTTGAAACTTCTCTATATAA TCCAATAATTCATTTTCATGATGAGTTACAACGACATATATCTTCTTTACATTATTCTGTTTAAA AAAATGTAACTGGTAATCAATTAAACATAAACCATTCATAGGTAAAAAAAAACGAAGACTTTCGC TAGTCAAGGGTTCAAATACTTCATCAAAATTGTTTTCAATTAATAACCCTATTAAATTTTTCTTC TCTTCTTCATAACATAGGTTAAAATCGACTTCCTTTTTCATTTTC Right flanking sequence: Indices 598861 -- 599360 TATATATATATATAACAGAAAAAAGAAAAATCTAATTATATATATAAATACTAATTATTTCTTTT GTCATCTATAAATTATTCTTTTATTTCTTATTATTTGGAAAATTTTTATTCATCTAAATATGCAA ATAATGCATAATGTATATATTGAAATATATATATATATATATATATATATATGTATATATTTATG TATTTATTTATTTTTTTTTTTTCTTGTCCTTGATATATAGGTCAATGGGTAATAATATTTCCCAA ATATATATTTTACGTAATTAAAAAAATATATAATATATATATAATAAATATATTATATTTTCTTG TTTTTTTTTTGCTATTTGCTCGTTATATATTATGAAGAAGGCCTTAAAAATATATAATCAATTAA TTTTATATTTATATCTTTTTACATATATATAATTTTTTTTAACTCTTCATTGTTTCTCCTCGCTT TAAAAAAAAAGAAAAAATAATAATAATAATAAATTTGTTAAAAAG Found at