TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739976 P. falciparum 3D7 GENOMIC pfal_chr4 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1204112 ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40 Found at i: i:600767 original size:48 final size:48 Alignment explanation
Indices: 600695--600837 Score: 224 Period size: 48 Copynumber: 2.9 Consensus size: 48 600685 ATTTAAATAA * 600695 ATTTTTTTATTTTTTTTTTATTTTATGATATATATATTTTTTTTTAAC 1 ATTTTTTTAATTTTTTTTTATTTTATGATATATATATTTTTTTTTAAC 600743 ATTTTTTTAATTTTTTTTTATTTTATGATATATAT-TTTTTTTTTAAC 1 ATTTTTTTAATTTTTTTTTATTTTATGATATATATATTTTTTTTTAAC *** 600790 ATTTTTTCCCTTTTCTTTTTATTTTATGATATATATATATATTTTTTT 1 ATTTTTTTAATTTT-TTTTTATTTTATGATATATATAT-T-TTTTTTT 600838 TTTAATGTTT Statistics Matches: 87, Mismatches: 4, Indels: 5 0.91 0.04 0.05 Matches are distributed among these distances: 47 23 0.26 48 55 0.63 49 1 0.01 50 1 0.01 51 7 0.08 ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71 Consensus pattern (48 bp): ATTTTTTTAATTTTTTTTTATTTTATGATATATATATTTTTTTTTAAC Left flanking sequence: Indices 600195 -- 600694 ACTACTATCTCCTTCCATATAAATATATGTTTTTCCTTTATATCGATCACTTGCATAGGGGATAT AACGATTGCTTGATTTCAATGTAGGTATATCATAATCACCTTTGGGTATTTGTAGTATTTGGAAT AAATTTCCAACAGATGCTTTGGTTTTTTTCTAAAAAAAAAAATGAACATATATGTGTAGGTATAT ATATGTATTTAGGTATATATTTATGTATGTATGTATGTAGTTATGGGTATATATATATATATGTA TGTGTAAATGTGTATGTAGTTATGGGTATATATATATATGTATGTGTATATGTGTACGTAGTTAT GGGTATATATATATATATGTGTAAATGTGTATGTAGTTATGGGTATAAATATATAATATATATAT GTATGTGTAAATGTGCATGTATTTAATTTTTTTATTTTTTTTTATTTAATTAAAATTTTTTATTT TTTTTTATTTCATTAAATTTTTTTAATTTTTTTTTATTTAAATAA Right flanking sequence: Indices 600838 -- 601337 TTTAATGTTTTTTTTTCTTCTTTTGTTTTTATTTAATAAATTTGTTTTTATTTTATTTCTAATAA ATTTTTTTTATAATCATTTTTTTTTTATATAAAATTTTTTTTTAATTTCTTTTTGATAATATTTT TTATTTTTTATTTTATCAAAATTTATATTTTTATTATAATTTTTATTATTTTTAAAATCTTTTTC TTTTTTTTTTTTTTTTTTTTTATTTTAATAAATTTGTTTTTATATTTCTTTTTTCTTTTTTTCTT TTTTAATATAAATATATATATATAAAATATATATAAAACACATACATATACACAAATATATATCC AAACATAATCACAAATACATATCCATAAAACACATATACATATATATATATCCAAACATACCCCA CAAATACATATAAAAAAAACACATCCACATATATAATTCCATTTACCTTTAGAAAAAAATATGTG AACGCAGCAAAACCAATACCCACACTCCACATGATCGTCGAAGAT Found at i:601200 original size:53 final size:54 Alignment explanation
Indices: 601122--601251 Score: 176 Period size: 53 Copynumber: 2.4 Consensus size: 54 601112 TATATATATA * * * * * 601122 AAATATATATAAAACACATACATATACACAAATATATATCCAAACATA-ATCAC 1 AAATACATATAAAAAAAACACATATACACAAATATATATCCAAACATACACCAC ** * * * * 601175 AAATACATATCCATAAAACACATATACATATATATATATCCAAACATACCCCAC 1 AAATACATATAAAAAAAACACATATACACAAATATATATCCAAACATACACCAC 601229 AAATACATATAAAAAAAACACAT 1 AAATACATATAAAAAAAACACAT 601252 CCACATATAT Statistics Matches: 62, Mismatches: 14, Indels: 1 0.81 0.18 0.01 Matches are distributed among these distances: 53 39 0.63 54 23 0.37 ACGTcount: A:0.56, C:0.21, G:0.00, T:0.23 Consensus pattern (54 bp): AAATACATATAAAAAAAACACATATACACAAATATATATCCAAACATACACCAC Left flanking sequence: Indices 600622 -- 601121 TTTTTTATTTAATTAAAATTTTTTATTTTTTTTTATTTCATTAAATTTTTTTAATTTTTTTTTAT TTAAATAAATTTTTTTATTTTTTTTTTATTTTATGATATATATATTTTTTTTTAACATTTTTTTA ATTTTTTTTTATTTTATGATATATATTTTTTTTTTAACATTTTTTCCCTTTTCTTTTTATTTTAT GATATATATATATATTTTTTTTTTAATGTTTTTTTTTCTTCTTTTGTTTTTATTTAATAAATTTG TTTTTATTTTATTTCTAATAAATTTTTTTTATAATCATTTTTTTTTTATATAAAATTTTTTTTTA ATTTCTTTTTGATAATATTTTTTATTTTTTATTTTATCAAAATTTATATTTTTATTATAATTTTT ATTATTTTTAAAATCTTTTTCTTTTTTTTTTTTTTTTTTTTTATTTTAATAAATTTGTTTTTATA TTTCTTTTTTCTTTTTTTCTTTTTTAATATAAATATATATATATA Right flanking sequence: Indices 601252 -- 601751 CCACATATATAATTCCATTTACCTTTAGAAAAAAATATGTGAACGCAGCAAAACCAATACCCACA CTCCACATGATCGTCGAAGATAACATGGCATTTTTTAATGCGGGTGGTAAGTCGGGTTTTGGTGG TTTTGGTTTTGGTAGAGGTCTTGGTGGTGATGGAGGCGCCGCAGGGGCCGGTGCTGGGGGGGTTT GTCTCTCACCACCTGCTGCTGCCGTTTCTTCTGCTGTTGTTTGTGCTGTTTCACACTTTTCTACT TCTTCCTCTATTTTTTTATCTTCCACTTGATTTGGACAAATGTTCGGTTGCGCCACTTGGTTTTC ATTTTCTTCAAGGAGTAAGTCCTCTTCATCATCAGGGTGGGTATCTTGACACTGTGCTGTGTTTT CATCACTCGGTTGGGTTTCGACACTATTTTGGGCCTGGTTCTTATTGCAGTCGTCAATTTTTTTT TGAAGTTTAGAAATTAAATTTGTTATAAAATCGCCCATATGACAT Found at i:602170 original size:12 final size:12 Alignment explanation
Indices: 602146--602171 Score: 38 Period size: 12 Copynumber: 2.2 Consensus size: 12 602136 TCATTAAACA * * 602146 CAATATCTTTAT 1 CAAAATCTATAT 602158 CAAAATCTATAT 1 CAAAATCTATAT 602170 CA 1 CA 602172 TTCGCAAATT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.42, C:0.19, G:0.00, T:0.38 Consensus pattern (12 bp): CAAAATCTATAT Left flanking sequence: Indices 601646 -- 602145 ACTCGGTTGGGTTTCGACACTATTTTGGGCCTGGTTCTTATTGCAGTCGTCAATTTTTTTTTGAA GTTTAGAAATTAAATTTGTTATAAAATCGCCCATATGACATTTTCCTGGATCCTCACCCTCCTTA AGATTGTCACCAGTACATCCCCATAATTTTTCTTTGTCACATGGTTTTTCAACCACTTCTTGGGC TTTCTTATAATCGTTGTCAAAGAGTCCCTGATCAACAAAATAACTTTTAACCCTAAAAGCAATCT CCTGATCAGAAATTTTTGAATATTGTTTATAAAGAGTTTTTATTTGAGTCCATTCTTGTTTCTTT TTACTTAACCATTCTTTCACACATTCACATTTATCATTACACCCTTGAGTACATTTATATGATTT TTCCTTTTCCTTTTCAGTTTCCTTTTTTGTACATGGATTAATCTTGTCTTTCAATTTATTATAAT CTTGTACAAAATATCTTAACCATCGTTGAAAGAATTCATTAAACA Right flanking sequence: Indices 602172 -- 602671 TTCGCAAATTTTGTTATTTTACACTGATCTATTCCCTTCTTCTTTTGGCAATTCCATTGTTCATA TCTGGCAACCTCAAAAAGACCTGTATTCTTACAAGCATCATGAAGATGCTTATCCTTGTCCTTTT CTTCTCCTTTGCGACCTAACACGAGCACTTCAATATTCTTAGGAATCGTATCGTTTTCCTTTTTT ACTCTACCTTTTTTGGACTTATAATCCTTTTCCTCATTAGGGATATAATTTCCCCCTATATACTT AACACCATAAACAGGACACGCTTTACAATACTTTGAAGGATTAAATGTCTTTTCAGGTTTATCAA AATTTATTTTATTATCTTGATCATTATTATCTTCACTAGGTTTGCAATGTTTCAATTCTTTCAAA AAATTTTCAGCACATTTATAACCTTCTAATTTTTTATCATCACTAGATTTATCTTTTGTTAATTT TCCATATTCATCTTTATATTTCTTTTCTTGGTTATGATATTCTAC Found at i:605366 original size:15 final size:15 Alignment explanation
Indices: 605343--605379 Score: 46 Period size: 15 Copynumber: 2.5 Consensus size: 15 605333 AAAGGTTCCT * * * 605343 TTATCTTTATTATTA 1 TTATTTTTATCATCA 605358 TTATTTTTATCATCA 1 TTATTTTTATCATCA * 605373 TTTTTTT 1 TTATTTT 605380 CAGTAAAATT Statistics Matches: 18, Mismatches: 4, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 15 18 1.00 ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70 Consensus pattern (15 bp): TTATTTTTATCATCA Left flanking sequence: Indices 604843 -- 605342 GTTTTTTTTTCCAATGTATGGAATCTTTTAACATATGTGCCACCCAATAGTAAAAAAAAGGATTG AATGTCTTTTGGATTTCATCATGGTCCTTTTCAGACGTATTTGCACCTTCTTCTTTATTTTTTTT TTGGTTTGGCAATATACATAATCCGCCTCCAGTTCTTACATCGTTGTCATAGTTTCGGTCATCCA CACCCTCTTCTTTTTCATCTTTCTCAAGCTGGTCAAATTGATAACATTGCCATGGATCATACAAA GAAGAATCACTATTACCACCATCTTTTTTATCACAAAACGCCTCTAATTTTTTTTCTATTTCTTC TTTTCCTTCACCACTTTTAAGGATTTTAATAGGAGTATGGGGTGCGTCCTTTTTAGGCTTATAAA GTTTTATATTGCATTGATCATTTTTCTTTTTCTCTTCCCATCCACTACCATTATATTTGACCCCA CAGTCGGGACATACTTGGCAATATTCCGATCGATAAAAGGTTCCT Right flanking sequence: Indices 605380 -- 605879 CAGTAAAATTAATTGTTCCTCCGTCATTGTCTTTAACAGCTTGGCATGATTTTTCTTTATTTAAT AATTTTAAAAAATCATCAACGGTTCCATAGTCGTCTTTCAGTATATTATAAAATTTACTTTCATA TCCATCATAATTACTACTACTACCAGTACTACGTGCACCCCGTTTTTGTCTCCTACTACTACGTG ATGCTTCGTTTATTTCGTCCGTGTATTTTTTTTTCTGTTTGTCAAATTGTTCTTTTTGTTTTTCT ATCCACTCAACGTAAGGATTACATGCATACAAGCAGTTAATGCAACCTTTATCTATAACAAAGTA ACCTTTTTTATATATAGTTTGTTCGCAATCGTAGCCATTACGACTACAATATCTTGGTACATCAT TGTAGACTCCACGACAATATTTTTTAACTATATCAACATATTTTTTCTTTTTTCTACAAAAGTCT TCGGCCCATTCCTCGAACCATCTCAAATATTGTGGCACATAATCG Found at i:605367 original size:12 final size:12 Alignment explanation
Indices: 605352--605381 Score: 39 Period size: 12 Copynumber: 2.5 Consensus size: 12 605342 TTTATCTTTA * * 605352 TTATTATTATTT 1 TTATCATCATTT 605364 TTATCATCATTT 1 TTATCATCATTT * 605376 TTTTCA 1 TTATCA 605382 GTAAAATTAA Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67 Consensus pattern (12 bp): TTATCATCATTT Left flanking sequence: Indices 604852 -- 605351 TCCAATGTATGGAATCTTTTAACATATGTGCCACCCAATAGTAAAAAAAAGGATTGAATGTCTTT TGGATTTCATCATGGTCCTTTTCAGACGTATTTGCACCTTCTTCTTTATTTTTTTTTTGGTTTGG CAATATACATAATCCGCCTCCAGTTCTTACATCGTTGTCATAGTTTCGGTCATCCACACCCTCTT CTTTTTCATCTTTCTCAAGCTGGTCAAATTGATAACATTGCCATGGATCATACAAAGAAGAATCA CTATTACCACCATCTTTTTTATCACAAAACGCCTCTAATTTTTTTTCTATTTCTTCTTTTCCTTC ACCACTTTTAAGGATTTTAATAGGAGTATGGGGTGCGTCCTTTTTAGGCTTATAAAGTTTTATAT TGCATTGATCATTTTTCTTTTTCTCTTCCCATCCACTACCATTATATTTGACCCCACAGTCGGGA CATACTTGGCAATATTCCGATCGATAAAAGGTTCCTTTATCTTTA Right flanking sequence: Indices 605382 -- 605881 GTAAAATTAATTGTTCCTCCGTCATTGTCTTTAACAGCTTGGCATGATTTTTCTTTATTTAATAA TTTTAAAAAATCATCAACGGTTCCATAGTCGTCTTTCAGTATATTATAAAATTTACTTTCATATC CATCATAATTACTACTACTACCAGTACTACGTGCACCCCGTTTTTGTCTCCTACTACTACGTGAT GCTTCGTTTATTTCGTCCGTGTATTTTTTTTTCTGTTTGTCAAATTGTTCTTTTTGTTTTTCTAT CCACTCAACGTAAGGATTACATGCATACAAGCAGTTAATGCAACCTTTATCTATAACAAAGTAAC CTTTTTTATATATAGTTTGTTCGCAATCGTAGCCATTACGACTACAATATCTTGGTACATCATTG TAGACTCCACGACAATATTTTTTAACTATATCAACATATTTTTTCTTTTTTCTACAAAAGTCTTC GGCCCATTCCTCGAACCATCTCAAATATTGTGGCACATAATCGAA Found at i:607197 original size:11 final size:11 Alignment explanation
Indices: 607181--607206 Score: 45 Period size: 11 Copynumber: 2.5 Consensus size: 11 607171 ATATATATAT 607181 TAATAAATTTA 1 TAATAAATTTA 607192 TAATAAATTTA 1 TAATAAATTTA 607203 -AATA 1 TAATA 607207 TTCTAACAAA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 10 4 0.27 11 11 0.73 ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42 Consensus pattern (11 bp): TAATAAATTTA Left flanking sequence: Indices 606681 -- 607180 AGTGTTGCACTGGTTAACAATCCTTTCAAATCACCATTACTCCGTTGTTTAGCTTCATTTTGTAC TTGGGCATGTACTCTTTTCCCTATGCTATCCAATGCATGTTTGGCACTTTCATCCTTCGTACCAC CACCACCACTTGTGGGCGCCATTTTCGTTATTGGTGCACTACATTATGTCATGCATACGTGGTTT ATATCGTGGCATACATGGTTTGGTGGTGTTTTGGTACGTACGTGGGTGTATGTATGTATGTATAT TACAGTAGTATTATAATATGGTAGAATAAGAATAATAACACTTTTGTGAATGTATATATATATGT AAGGTATAATTTATTTATTACAATATATATAAATATTGTATATATATATATATATATTAATAGTT GTACTATTATAATATTACAATATATGTATATGTTAAAAAAATAATATTTAATATGTATATAATAA TAATTATTAGTTTTATATATTTTTAAAAAAAATATATATATATAT Right flanking sequence: Indices 607207 -- 607706 TTCTAACAAAAAAAAAATATAATCAGAAATATTATATTTTATGTATTCCTTTATTTATCTATTTA ATTATATATATATTATTTTTTTTATGTTTTATTTATTATGTAAAATTATAAATGAGAAAAAAAAA ATACGAAAATACAAACATATAAAAAAGTATATATGCAACGTGTTTATATATTTAATTATTAACAT TAATATATGTATATTTTTTTTGACTTTATTTTAATTTATTATATATATGTATATTAGAGATAACA AAAGAGACAAATATGTTCTTCCGTTTCTCTCTATCTATATTATCTATCATATTTATATATTCATA TATATATATAATTGATATAGATACATATTCTTTGTATTGTTGTATTATATTAAAAGTAGTATATT ATTGTTTTTAATTTTTGTTGTTATATAATATAATTTATTATATAATAATATATATAGCATCAAAA AAAAAATGATAAATAAATAACAGGAAAAAAATATTATTATATTAT Found at i:607514 original size:13 final size:12 Alignment explanation
Indices: 607496--607532 Score: 40 Period size: 13 Copynumber: 2.8 Consensus size: 12 607486 TCCGTTTCTC 607496 TCTATCTATATTA 1 TCTATC-ATATTA 607509 TCTATCATATTTA 1 TCTATCATA-TTA * 607522 TATATTCATAT 1 TCTA-TCATAT 607533 ATATATATAA Statistics Matches: 21, Mismatches: 1, Indels: 4 0.81 0.04 0.15 Matches are distributed among these distances: 12 3 0.14 13 13 0.62 14 5 0.24 ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54 Consensus pattern (12 bp): TCTATCATATTA Left flanking sequence: Indices 606996 -- 607495 ATATATATGTAAGGTATAATTTATTTATTACAATATATATAAATATTGTATATATATATATATAT ATTAATAGTTGTACTATTATAATATTACAATATATGTATATGTTAAAAAAATAATATTTAATATG TATATAATAATAATTATTAGTTTTATATATTTTTAAAAAAAATATATATATATATTAATAAATTT ATAATAAATTTAAATATTCTAACAAAAAAAAAATATAATCAGAAATATTATATTTTATGTATTCC TTTATTTATCTATTTAATTATATATATATTATTTTTTTTATGTTTTATTTATTATGTAAAATTAT AAATGAGAAAAAAAAAATACGAAAATACAAACATATAAAAAAGTATATATGCAACGTGTTTATAT ATTTAATTATTAACATTAATATATGTATATTTTTTTTGACTTTATTTTAATTTATTATATATATG TATATTAGAGATAACAAAAGAGACAAATATGTTCTTCCGTTTCTC Right flanking sequence: Indices 607533 -- 608032 ATATATATAATTGATATAGATACATATTCTTTGTATTGTTGTATTATATTAAAAGTAGTATATTA TTGTTTTTAATTTTTGTTGTTATATAATATAATTTATTATATAATAATATATATAGCATCAAAAA AAAAATGATAAATAAATAACAGGAAAAAAATATTATTATATTATATTAATAAAAATGTTTTTATC ATTTGTTTTGTTGTATTTTTTTATGTATTTCATGCATTTTATGAATTTAAAAATTTTATTGTATA ATATAAAAAAATAAGTAAAAATACACATTATAAATATATATATTCAAATATGAGTTATTAATAAA ATGTTCATGTTCTATATATTTATATAAATGAAAATATTTGTTATAATATAAATACATATATGCTA CTATATAAATATTAATAATATCTTTAAAGTATATACTAAAATATATAAAAATGCATGTATAAAAA TAATATAAAATCATACATATATGTATATATATATATATATGCATA Found at i:607532 original size:14 final size:14 Alignment explanation
Indices: 607513--607540 Score: 49 Period size: 14 Copynumber: 2.0 Consensus size: 14 607503 ATATTATCTA * 607513 TCATATTTATATAT 1 TCATATATATATAT 607527 TCATATATATATAT 1 TCATATATATATAT 607541 AATTGATATA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54 Consensus pattern (14 bp): TCATATATATATAT Left flanking sequence: Indices 607013 -- 607512 AATTTATTTATTACAATATATATAAATATTGTATATATATATATATATATTAATAGTTGTACTAT TATAATATTACAATATATGTATATGTTAAAAAAATAATATTTAATATGTATATAATAATAATTAT TAGTTTTATATATTTTTAAAAAAAATATATATATATATTAATAAATTTATAATAAATTTAAATAT TCTAACAAAAAAAAAATATAATCAGAAATATTATATTTTATGTATTCCTTTATTTATCTATTTAA TTATATATATATTATTTTTTTTATGTTTTATTTATTATGTAAAATTATAAATGAGAAAAAAAAAA TACGAAAATACAAACATATAAAAAAGTATATATGCAACGTGTTTATATATTTAATTATTAACATT AATATATGTATATTTTTTTTGACTTTATTTTAATTTATTATATATATGTATATTAGAGATAACAA AAGAGACAAATATGTTCTTCCGTTTCTCTCTATCTATATTATCTA Right flanking sequence: Indices 607541 -- 608040 AATTGATATAGATACATATTCTTTGTATTGTTGTATTATATTAAAAGTAGTATATTATTGTTTTT AATTTTTGTTGTTATATAATATAATTTATTATATAATAATATATATAGCATCAAAAAAAAAATGA TAAATAAATAACAGGAAAAAAATATTATTATATTATATTAATAAAAATGTTTTTATCATTTGTTT TGTTGTATTTTTTTATGTATTTCATGCATTTTATGAATTTAAAAATTTTATTGTATAATATAAAA AAATAAGTAAAAATACACATTATAAATATATATATTCAAATATGAGTTATTAATAAAATGTTCAT GTTCTATATATTTATATAAATGAAAATATTTGTTATAATATAAATACATATATGCTACTATATAA ATATTAATAATATCTTTAAAGTATATACTAAAATATATAAAAATGCATGTATAAAAATAATATAA AATCATACATATATGTATATATATATATATATGCATATATGTAGA Found at i:607748 original size:12 final size:12 Alignment explanation
Indices: 607733--607757 Score: 36 Period size: 12 Copynumber: 2.1 Consensus size: 12 607723 TTATCATTTG * 607733 TTTTGTTGTATT 1 TTTTGATGTATT * 607745 TTTTTATGTATT 1 TTTTGATGTATT 607757 T 1 T 607758 CATGCATTTT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76 Consensus pattern (12 bp): TTTTGATGTATT Left flanking sequence: Indices 607233 -- 607732 AAATATTATATTTTATGTATTCCTTTATTTATCTATTTAATTATATATATATTATTTTTTTTATG TTTTATTTATTATGTAAAATTATAAATGAGAAAAAAAAAATACGAAAATACAAACATATAAAAAA GTATATATGCAACGTGTTTATATATTTAATTATTAACATTAATATATGTATATTTTTTTTGACTT TATTTTAATTTATTATATATATGTATATTAGAGATAACAAAAGAGACAAATATGTTCTTCCGTTT CTCTCTATCTATATTATCTATCATATTTATATATTCATATATATATATAATTGATATAGATACAT ATTCTTTGTATTGTTGTATTATATTAAAAGTAGTATATTATTGTTTTTAATTTTTGTTGTTATAT AATATAATTTATTATATAATAATATATATAGCATCAAAAAAAAAATGATAAATAAATAACAGGAA AAAAATATTATTATATTATATTAATAAAAATGTTTTTATCATTTG Right flanking sequence: Indices 607758 -- 608257 CATGCATTTTATGAATTTAAAAATTTTATTGTATAATATAAAAAAATAAGTAAAAATACACATTA TAAATATATATATTCAAATATGAGTTATTAATAAAATGTTCATGTTCTATATATTTATATAAATG AAAATATTTGTTATAATATAAATACATATATGCTACTATATAAATATTAATAATATCTTTAAAGT ATATACTAAAATATATAAAAATGCATGTATAAAAATAATATAAAATCATACATATATGTATATAT ATATATATATGCATATATGTAGAATAAATTTATTTATATTCCAAATACTGATATTGTTTTATATT TGTTATATTATAATAACAAAAAAGAACGACAAGAAGTAAAAAATAATAATAATAATAAAAGGATG ATATAATAAAACTAATTACCTATTAGTATAGTTTTAATGTCTTTATATATATATATATATATATA TATATATATATATATATATATATTTTATACAAGTATTATTCTTGT Found at i:610079 original size:18 final size:18 Alignment explanation
Indices: 610038--610079 Score: 56 Period size: 18 Copynumber: 2.4 Consensus size: 18 610028 GAATCCAAGG * 610038 TATAAAAAAATATAATAT 1 TATAAAAAAAAATAATAT * 610056 TATAAAAAAAAATTA-AT 1 TATAAAAAAAAATAATAT * 610073 TATTAAA 1 TATAAAA 610080 TGATCATAGC Statistics Matches: 21, Mismatches: 3, Indels: 1 0.84 0.12 0.04 Matches are distributed among these distances: 17 8 0.38 18 13 0.62 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (18 bp): TATAAAAAAAAATAATAT Left flanking sequence: Indices 609538 -- 610037 TCTTAAGATGAATACATATATATATGTTGATTATAATTTATGCTATCGTATACAATTAAATTTTA TTACAAATTAAACCAATTAAAAAAACTCTTAAATATTTTATTATATTATACTTTTTTTATAATAC AATACATATTCAGCTTCGAATAAGGAAATATATATTTGTATAATGAAAAGTTAATTGTGCCATAT TAAAAAATTATAATAACAACTTATATTAAACATTTTTTATAAATAAATAAAAAAAAAAAACATAC ATAAAATAAAATACATTATCATGTGTTAATTACTTTTTCAAATTTCTTACTTTTATATACATATA ACAATAAAAATGAAGTTCTATTAATTTAATATATTATTATGTTCTATTCTGTTCAATATGTTATT ATCATCATCACATTTATGCATCTAATAATGATTATTAATATATATATATATATATATAATTATAA TAATTAAATAATCATATAATAATAAAACAATGTAAGAATCCAAGG Right flanking sequence: Indices 610080 -- 610579 TGATCATAGCATATTAAATGAAAAATTCACAATACTTTAAATTATCGCGAATAGCTCGACATCGT ATATCTATTCCTTTAATAATTTTATATATTGCAATTTTTTCTTCATTTTTTTTTTTCTACGATAA CGTAATATTAAATAAATAATTACCATAACTAAAACTATAACCAATATCGCAGTTACTGAGTAAGT AATTGCACTGTACGTATTAGCACCTGCAGATGCTATTTTACTTAACTCTGCTTTGATCATTCCGG AAGTAGTTTCGTTAGCAGTTGTCTGAGCAGCTTGTGAAGCAACGTTGTCAGCATTTTTGAGAAGA GTTTTTACGCTTGATCTTATAACAGCTTCAGGTGAAGCAGATTTCCCTTGAACTAGGCCAGCTCT CATCCCATAAGCGCAAATTAATTTGTCATCCGTAGGCGTATTTACACACATACTTCCATATTCAA AATGTAGTGCTTTAGTAAGAATAGTGTCATCCTTAAGAGTTTCTA Found at i:611284 original size:22 final size:24 Alignment explanation
Indices: 611259--611314 Score: 61 Period size: 24 Copynumber: 2.4 Consensus size: 24 611249 TTAGTTTTAA * 611259 TTTATGATT-GTATA-TATATATT 1 TTTATAATTAGTATATTATATATT * 611281 TTTATAATTACGTATATTTTATA-T 1 TTTATAATTA-GTATATTATATATT * 611305 TTTATATTTA 1 TTTATAATTA 611315 CATAAATTAC Statistics Matches: 28, Mismatches: 3, Indels: 4 0.80 0.09 0.11 Matches are distributed among these distances: 22 8 0.29 24 15 0.54 25 5 0.18 ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61 Consensus pattern (24 bp): TTTATAATTAGTATATTATATATT Left flanking sequence: Indices 610759 -- 611258 ATAACAAGTCCACCGATTTCTCCTAATAAACCTAAAGATGGAGCCACACCAACACCTAATATACC ACCACATTTCAAACAAGTTTTTTCGACTTTATATCCTACGGATTTTTGACATGTACACGTAGGAA TGGCGTCACTTCGTATTTCTGTTTGTAATGCTCCCAACTTTTCTGTTAATTCTTTTTCGATTTTG TCTTTTAATATAATTTTTTGTATATCTTTCTCGCATTGTTCTTTACATTTTTGGCGGTTTTCTTG AATCCTTTTGTGATATTCATGAGATCGTTGTGATGTACGATCATCAAATTGTTGTTTGACTTTTT TCATTTCTGGGTCATTATCATAATTAGATGGTGCATACAATTCACATTCGCATAATGATCTACAT GTTTTTACAGATTTGGGGTTAGTTTTATGTGGTGTGAGGTATGGATTTTTTTGATTATATACCTA TAAAAAATATTCATATATATATATGTATGTGATATTTAGTTTTAA Right flanking sequence: Indices 611315 -- 611814 CATAAATTACAAAATTTTGTATATTATTATTATAAATGTCATTATTTCATGCATACCTGTGAAGA AGTTAACAATATATTTAATGGATGGGAAAACAATAATATACTAATATAATGGACCTTCATTTTTA TAATGATACATATATTATTTTATTCTTAATATTATAACTAAATAATTGATATAAAATAATGTATT TAACTTTATTAAAAAAAAAAAAATTTTATCTAAAGTATTATTATAGTTTATATAATATAATACAC AATTAACTTTCCATTATACAAATATATATTTTCTACTGGAACTATATTTGCCCTTTTAATCAGAA CAAAAAAAAAAAAAATAAAATAAAATAAAATAAAATAAAATAATTAATTCAATTTTTAAAAAAAT AATATAATAAAACATTTCCATATTTTTCACACCATAAATTATAATGATATTTTTTTTTTTTTTGT AAATTTTCATAACTCACAAAACTGTAGTTACAAATATCATATTTA Found at i:611307 original size:24 final size:25 Alignment explanation
Indices: 611275--611322 Score: 68 Period size: 24 Copynumber: 2.0 Consensus size: 25 611265 ATTGTATATA * * 611275 TATATTTTTATAATTACGTATATTT 1 TATATTTTTATAATTACATAAATTT * 611300 TATA-TTTTATATTTACATAAATT 1 TATATTTTTATAATTACATAAATT 611323 ACAAAATTTT Statistics Matches: 20, Mismatches: 3, Indels: 1 0.83 0.12 0.04 Matches are distributed among these distances: 24 16 0.80 25 4 0.20 ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58 Consensus pattern (25 bp): TATATTTTTATAATTACATAAATTT Left flanking sequence: Indices 610775 -- 611274 TTTCTCCTAATAAACCTAAAGATGGAGCCACACCAACACCTAATATACCACCACATTTCAAACAA GTTTTTTCGACTTTATATCCTACGGATTTTTGACATGTACACGTAGGAATGGCGTCACTTCGTAT TTCTGTTTGTAATGCTCCCAACTTTTCTGTTAATTCTTTTTCGATTTTGTCTTTTAATATAATTT TTTGTATATCTTTCTCGCATTGTTCTTTACATTTTTGGCGGTTTTCTTGAATCCTTTTGTGATAT TCATGAGATCGTTGTGATGTACGATCATCAAATTGTTGTTTGACTTTTTTCATTTCTGGGTCATT ATCATAATTAGATGGTGCATACAATTCACATTCGCATAATGATCTACATGTTTTTACAGATTTGG GGTTAGTTTTATGTGGTGTGAGGTATGGATTTTTTTGATTATATACCTATAAAAAATATTCATAT ATATATATGTATGTGATATTTAGTTTTAATTTATGATTGTATATA Right flanking sequence: Indices 611323 -- 611822 ACAAAATTTTGTATATTATTATTATAAATGTCATTATTTCATGCATACCTGTGAAGAAGTTAACA ATATATTTAATGGATGGGAAAACAATAATATACTAATATAATGGACCTTCATTTTTATAATGATA CATATATTATTTTATTCTTAATATTATAACTAAATAATTGATATAAAATAATGTATTTAACTTTA TTAAAAAAAAAAAAATTTTATCTAAAGTATTATTATAGTTTATATAATATAATACACAATTAACT TTCCATTATACAAATATATATTTTCTACTGGAACTATATTTGCCCTTTTAATCAGAACAAAAAAA AAAAAAATAAAATAAAATAAAATAAAATAAAATAATTAATTCAATTTTTAAAAAAATAATATAAT AAAACATTTCCATATTTTTCACACCATAAATTATAATGATATTTTTTTTTTTTTTGTAAATTTTC ATAACTCACAAAACTGTAGTTACAAATATCATATTTAATGTTTTA Found at i:612378 original size:13 final size:13 Alignment explanation
Indices: 612360--612390 Score: 48 Period size: 13 Copynumber: 2.4 Consensus size: 13 612350 AGATTCTAAG 612360 GTATATATAATAT 1 GTATATATAATAT * 612373 GTATATATATTAT 1 GTATATATAATAT * 612386 ATATA 1 GTATA 612391 ACTTTACATT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 13 16 1.00 ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48 Consensus pattern (13 bp): GTATATATAATAT Left flanking sequence: Indices 611860 -- 612359 GTGTATATCACATATAATTTACAACTGCTTAGAATATATATGTAAAATTGTTATTGAAACATGTA TATTTACAATCTTGCAATAATATAATAATTAGTAATAATTATTGTATATCATAATATATGGTATT AAAAACAAAACTAATAGAATATAAATTTTTATAACGGTTAAACATAATATATTTTAATAATTTAA TTTGGTTTCTTATATTTTGTGTTCGAAAAATTATTGTATGCTATACGTTCCCCTCTAATTTATCT AAAATTATACAAATTTAAATAAATAAATACGCAAATACATAAATATATATATATATATTAAAAAG TATATTAAAATTGTTTTCTATTAAAAAAAAATATATTGTATAATTACAACGGAAATAAAATATTC ATATTTATTATTAAAAAGAAAGTATAAATATATTAAAATACTATTGTATAGTTTTTTGTAGTATC GTAGGTTATACAAATATATTATATTCATAATTTAGAGATTCTAAG Right flanking sequence: Indices 612391 -- 612890 ACTTTACATTTTGTTAAATAATAATTGTATGATTACTAGTTGTAACAATATAGTTACAACTATAT ATTTTAATAATTATATTAATTGTTATTATGATATATTTTGAAAACATTATACGACTTTTTATAAT ATAATAAATGAAATAAAAAAATGTATTTTCATATAATGTTTAATTAACATTAATAAAAAAAAAAT AAAAATAATAAATTTATTCATAAGGAAAAAAAAAGAAAAAAAAAAAGAAGAAATTATATTATTAT CTATATGAAGTTATAAAATTATAGAATAATATAATTTGATATTAATATATATATATATATATATA TATATATATATAAATTCATTTGTAATTTATATTTATAATTATTATTATAATTAGTAAACAACTTG ATATATGAAATAATATATATATGCGTAAGATTTATTTATTAAATTCAATGGTTAAAATTTATACA TAATTTTATATATTTTCAGTAAGGTCAACGATAAATGGTTAAATA Found at i:612626 original size:12 final size:12 Alignment explanation
Indices: 612611--612638 Score: 49 Period size: 12 Copynumber: 2.3 Consensus size: 12 612601 ATTCATAAGG 612611 AAAAAAAAAGAA 1 AAAAAAAAAGAA 612623 AAAAAAAAAGAA 1 AAAAAAAAAGAA * 612635 GAAA 1 AAAA 612639 TTATATTATT Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00 Consensus pattern (12 bp): AAAAAAAAAGAA Left flanking sequence: Indices 612111 -- 612610 AATTTATCTAAAATTATACAAATTTAAATAAATAAATACGCAAATACATAAATATATATATATAT ATTAAAAAGTATATTAAAATTGTTTTCTATTAAAAAAAAATATATTGTATAATTACAACGGAAAT AAAATATTCATATTTATTATTAAAAAGAAAGTATAAATATATTAAAATACTATTGTATAGTTTTT TGTAGTATCGTAGGTTATACAAATATATTATATTCATAATTTAGAGATTCTAAGGTATATATAAT ATGTATATATATTATATATAACTTTACATTTTGTTAAATAATAATTGTATGATTACTAGTTGTAA CAATATAGTTACAACTATATATTTTAATAATTATATTAATTGTTATTATGATATATTTTGAAAAC ATTATACGACTTTTTATAATATAATAAATGAAATAAAAAAATGTATTTTCATATAATGTTTAATT AACATTAATAAAAAAAAAATAAAAATAATAAATTTATTCATAAGG Right flanking sequence: Indices 612639 -- 613138 TTATATTATTATCTATATGAAGTTATAAAATTATAGAATAATATAATTTGATATTAATATATATA TATATATATATATATATATATATAAATTCATTTGTAATTTATATTTATAATTATTATTATAATTA GTAAACAACTTGATATATGAAATAATATATATATGCGTAAGATTTATTTATTAAATTCAATGGTT AAAATTTATACATAATTTTATATATTTTCAGTAAGGTCAACGATAAATGGTTAAATACTTAAAAT TTAAAATTAGTATTAGAAAGATAAACATTTTCACGCTTCCTTTATTCACTTAAGATAAAATATAA TCATCCATTTCTATAATATGTTTATTCAATGTCTTCTCATAAATTATAATAATATTTTTTTGTAT TAATAAAAGAATATGATAACTATTCTAACAAGAATATGCTTATACAATTGTGAACACTACCGAAT AATATTTTTATATAAAAGAAATATATTTATATGTAGGAATTATAT Found at i:612627 original size:11 final size:11 Alignment explanation
Indices: 612607--612630 Score: 41 Period size: 11 Copynumber: 2.2 Consensus size: 11 612597 ATTTATTCAT * 612607 AAGGAAAAAAA 1 AAGAAAAAAAA 612618 AAGAAAAAAAA 1 AAGAAAAAAAA 612629 AA 1 AA 612631 AGAAGAAATT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00 Consensus pattern (11 bp): AAGAAAAAAAA Left flanking sequence: Indices 612107 -- 612606 CTCTAATTTATCTAAAATTATACAAATTTAAATAAATAAATACGCAAATACATAAATATATATAT ATATATTAAAAAGTATATTAAAATTGTTTTCTATTAAAAAAAAATATATTGTATAATTACAACGG AAATAAAATATTCATATTTATTATTAAAAAGAAAGTATAAATATATTAAAATACTATTGTATAGT TTTTTGTAGTATCGTAGGTTATACAAATATATTATATTCATAATTTAGAGATTCTAAGGTATATA TAATATGTATATATATTATATATAACTTTACATTTTGTTAAATAATAATTGTATGATTACTAGTT GTAACAATATAGTTACAACTATATATTTTAATAATTATATTAATTGTTATTATGATATATTTTGA AAACATTATACGACTTTTTATAATATAATAAATGAAATAAAAAAATGTATTTTCATATAATGTTT AATTAACATTAATAAAAAAAAAATAAAAATAATAAATTTATTCAT Right flanking sequence: Indices 612631 -- 613130 AGAAGAAATTATATTATTATCTATATGAAGTTATAAAATTATAGAATAATATAATTTGATATTAA TATATATATATATATATATATATATATATATAAATTCATTTGTAATTTATATTTATAATTATTAT TATAATTAGTAAACAACTTGATATATGAAATAATATATATATGCGTAAGATTTATTTATTAAATT CAATGGTTAAAATTTATACATAATTTTATATATTTTCAGTAAGGTCAACGATAAATGGTTAAATA CTTAAAATTTAAAATTAGTATTAGAAAGATAAACATTTTCACGCTTCCTTTATTCACTTAAGATA AAATATAATCATCCATTTCTATAATATGTTTATTCAATGTCTTCTCATAAATTATAATAATATTT TTTTGTATTAATAAAAGAATATGATAACTATTCTAACAAGAATATGCTTATACAATTGTGAACAC TACCGAATAATATTTTTATATAAAAGAAATATATTTATATGTAGG Found at i:614146 original size:38 final size:37 Alignment explanation
Indices: 614065--614155 Score: 115 Period size: 38 Copynumber: 2.4 Consensus size: 37 614055 ACACTTCTTA * * * 614065 ATATATATATTACATAATAATATAATATTAAGACCTT 1 ATATATATATGATATAATAATATAATATTAAGACCAT * *** 614102 AGATATATATGATATAATACATATAATATTAAGTTTAT 1 ATATATATATGATATAATA-ATATAATATTAAGACCAT 614140 ATATATATAGTGATAT 1 ATATATATA-TGATAT 614156 GTGATACATT Statistics Matches: 44, Mismatches: 8, Indels: 2 0.81 0.15 0.04 Matches are distributed among these distances: 37 16 0.36 38 22 0.50 39 6 0.14 ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42 Consensus pattern (37 bp): ATATATATATGATATAATAATATAATATTAAGACCAT Left flanking sequence: Indices 613565 -- 614064 TTATGTAATTGTAAATAAAAGGAATAACGTGATTTTTCAAAAATGTGCATTATTTATTTTCCTTT TTTTTTTATTTCGTTATTTTAATATTTTATCTATGCATAAAATATATTCTGAATGTTATGCGTAC ATATTAATCCTATTTATATATATCATATAGTGAAAAGACTAAAAATTTAATATGAATTTGTATTT TAAATAATCATAGATGTTATATATATAATACAAATATATGAACGTTCTATATTGAGTGTATATGT ATATACTATATATTATTATGTGTATATATTTATTTACATTAATTTACTTTGAAATATATGTATTT TATAAATATAAGAATAAAATATATATACATCCATGAAATAAAATATATATATATATATATATATA TATATAGTTTTTTTGTCGTATAATTTTTTTCATTTTCGTATAAAGAGAAATATAATTTTTTTTTT TTTATATTTATATTCACTATAACAATTATAAAATTACACTTCTTA Right flanking sequence: Indices 614156 -- 614655 GTGATACATTTAGCAATAAACCCTTATATTATATATTATAATTTTAACTAATTTATTTTTTATAT TATATTGAAAAAATTTTCAACAGATAATTATTTTTATATATTATAAATTAACATGAACAAATACA ATGTAAATTGTTGAAATTAATCCTTAATATTTAATTATTCTTTTTATAATATATATATATATAAA TGTATGTTCCATTATTATATCGTATATAGGATAAAATATTTTTATTATTATTTACACTTTTTATT TTATTTTATTCCTCTTTCCTTATTAAAATGATAATAATAATATTTCCTTATTACTCGTTCAATAG TAAAGAAAAAATGTGCATATATATATATGATGTGATAATTATATAAAATATTTTGGAAATTCGAA ATGATAGGGACATGTATATCGTAAAATATCTATATATATGTTTGTATAATAAATATAAATATAAA ACATATTTTTCTTATTATGTTAAATATAAAATTATAATTATATAT Found at i:615401 original size:12 final size:12 Alignment explanation
Indices: 615373--615406 Score: 54 Period size: 12 Copynumber: 2.8 Consensus size: 12 615363 ATACTTTTTA * 615373 ATATATATATGT 1 ATATTTATATGT 615385 ATATTTATATGT 1 ATATTTATATGT * 615397 ATATTCATAT 1 ATATTTATAT 615407 TACTATAATT Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 12 20 1.00 ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53 Consensus pattern (12 bp): ATATTTATATGT Left flanking sequence: Indices 614873 -- 615372 TTTTTTTTAATCCCCCTTTTTAGAATTATAATTATTCCATACACAAAAAATTTTCATAAATATTA TCAATTGTTTTTTTTATAATTAGTAAAAACCAATATTAAATTATATTATTTCTTATAATAATTAC TATAATTATATAATATCCTCCTACTTTTTACATATAATATATATATATATATATATATAATAACC ATTAATATAATATTATTATTAAACTTTATAGTTTTAATTATATCCTTACAACTAGTAATCATACA ATTAAAGTATCAATAAATTATAAAATAGTATACTATTTTAATAGTTAATATAATATATATTATCA AAATCATCCATTCTCTAAATCATGAATAGAACATATTTGCATGGCATACAACAATACAGAAAACT ATATAATATAGTATTTAATAATATTTACAATTTCTCTTTTCTTTAATATTTTTTTAATCATAAAT ATAAATATTTTTTTTAATACAGAACAATTTTTAAAATACTTTTTA Right flanking sequence: Indices 615407 -- 615906 TACTATAATTGTAGATACATTAGAGAGAAATGTATAACATATAATAAATTTAAAAATAAAAAATA ACAAAAAAATAAAATTATTAAAATACATTACATTTCATTAATTAATATTAAAATTTATATTCTAT TTCATTTACCTTTTATATCATATACTATGAACGATTTATTTAATTACATAATTCTTTTATATAAT TGCAATGATGTAAAATTATATCTTAGAATATATATTTTACATGTGTATGTTCTAAACAAATTGTA ATATATATTATATGTATTGCACACCTTCAACAACTACTTCTCTACACATTTTTATATTATTTACA ACAAAAAAAAACAAGTTGTAACTATATTGTTACTTTTTATGAATATGTATAATAATAAAATTCAA TTATGATTTATATTATTACATAAAATTAAAATGTTTTTAGAAATAAAATATAAAAAATATTATAT GTTTTATTATATAAACTTTTTTAATTTTAATTTTTTATTTTATTT Found at i:615901 original size:13 final size:13 Alignment explanation
Indices: 615879--615910 Score: 50 Period size: 13 Copynumber: 2.5 Consensus size: 13 615869 TATATAAACT * 615879 TTTTTAATTTTAA 1 TTTTTTATTTTAA * 615892 TTTTTTATTTTAT 1 TTTTTTATTTTAA 615905 TTTTTT 1 TTTTTT 615911 TTTCTTTTTT Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 13 17 1.00 ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81 Consensus pattern (13 bp): TTTTTTATTTTAA Left flanking sequence: Indices 615379 -- 615878 ATATGTATATTTATATGTATATTCATATTACTATAATTGTAGATACATTAGAGAGAAATGTATAA CATATAATAAATTTAAAAATAAAAAATAACAAAAAAATAAAATTATTAAAATACATTACATTTCA TTAATTAATATTAAAATTTATATTCTATTTCATTTACCTTTTATATCATATACTATGAACGATTT ATTTAATTACATAATTCTTTTATATAATTGCAATGATGTAAAATTATATCTTAGAATATATATTT TACATGTGTATGTTCTAAACAAATTGTAATATATATTATATGTATTGCACACCTTCAACAACTAC TTCTCTACACATTTTTATATTATTTACAACAAAAAAAAACAAGTTGTAACTATATTGTTACTTTT TATGAATATGTATAATAATAAAATTCAATTATGATTTATATTATTACATAAAATTAAAATGTTTT TAGAAATAAAATATAAAAAATATTATATGTTTTATTATATAAACT Right flanking sequence: Indices 615911 -- 616410 TTTCTTTTTTCTTTCTTTTAGTAACAGAAGAATCATTCAAATTTCAATAAAGTAATTTAATTTAT AATGGAAACTAAATTGTCGTATATTATAAAATTTCAATCATATTTTAAATTAAACATATGTAATT CTTTTAATAAAAAAAAATATATTACTATATATGAATTATTTAGTTATAAATTTAATAATAAAAAA ATATACGTATAACAATATAACAATAAAAAAAAATGAAACTCCATTATTTTAAAATATTATTATTG TTTGCTCATCCATTAAATATATTGTTATTATCGTCATCACATGTATTCACCAAATTATGATAATT TTAATAATACAATATACATATATGATTATATGCACATATATATGTTACGATACCCTCCATATAAT AATTATACCTATGTATATCGATATAACTTATATATAATCATAATATATGTCCATTCATTATATAT AATAATTATAACAAAAAATATATATATATAATAATAAACTAGAAC Found at i:615913 original size:11 final size:11 Alignment explanation
Indices: 615886--615929 Score: 51 Period size: 11 Copynumber: 3.9 Consensus size: 11 615876 ACTTTTTTAA * 615886 TTTTAATTTTT 1 TTTTTATTTTT 615897 TATTTTATTTTT 1 T-TTTTATTTTT * 615909 TTTTTCTTTTT 1 TTTTTATTTTT * * 615920 TCTTTCTTTT 1 TTTTTATTTT 615930 AGTAACAGAA Statistics Matches: 29, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 11 19 0.66 12 10 0.34 ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84 Consensus pattern (11 bp): TTTTTATTTTT Left flanking sequence: Indices 615386 -- 615885 TATTTATATGTATATTCATATTACTATAATTGTAGATACATTAGAGAGAAATGTATAACATATAA TAAATTTAAAAATAAAAAATAACAAAAAAATAAAATTATTAAAATACATTACATTTCATTAATTA ATATTAAAATTTATATTCTATTTCATTTACCTTTTATATCATATACTATGAACGATTTATTTAAT TACATAATTCTTTTATATAATTGCAATGATGTAAAATTATATCTTAGAATATATATTTTACATGT GTATGTTCTAAACAAATTGTAATATATATTATATGTATTGCACACCTTCAACAACTACTTCTCTA CACATTTTTATATTATTTACAACAAAAAAAAACAAGTTGTAACTATATTGTTACTTTTTATGAAT ATGTATAATAATAAAATTCAATTATGATTTATATTATTACATAAAATTAAAATGTTTTTAGAAAT AAAATATAAAAAATATTATATGTTTTATTATATAAACTTTTTTAA Right flanking sequence: Indices 615930 -- 616429 AGTAACAGAAGAATCATTCAAATTTCAATAAAGTAATTTAATTTATAATGGAAACTAAATTGTCG TATATTATAAAATTTCAATCATATTTTAAATTAAACATATGTAATTCTTTTAATAAAAAAAAATA TATTACTATATATGAATTATTTAGTTATAAATTTAATAATAAAAAAATATACGTATAACAATATA ACAATAAAAAAAAATGAAACTCCATTATTTTAAAATATTATTATTGTTTGCTCATCCATTAAATA TATTGTTATTATCGTCATCACATGTATTCACCAAATTATGATAATTTTAATAATACAATATACAT ATATGATTATATGCACATATATATGTTACGATACCCTCCATATAATAATTATACCTATGTATATC GATATAACTTATATATAATCATAATATATGTCCATTCATTATATATAATAATTATAACAAAAAAT ATATATATATAATAATAAACTAGAACTATTACATATATATATATA Found at i:616101 original size:12 final size:12 Alignment explanation
Indices: 616078--616102 Score: 36 Period size: 12 Copynumber: 2.1 Consensus size: 12 616068 TATATGAATT * * 616078 ATTTAGTTATAA 1 ATTTAATAATAA 616090 ATTTAATAATAA 1 ATTTAATAATAA 616102 A 1 A 616103 AAAATATACG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44 Consensus pattern (12 bp): ATTTAATAATAA Left flanking sequence: Indices 615578 -- 616077 AATTACATAATTCTTTTATATAATTGCAATGATGTAAAATTATATCTTAGAATATATATTTTACA TGTGTATGTTCTAAACAAATTGTAATATATATTATATGTATTGCACACCTTCAACAACTACTTCT CTACACATTTTTATATTATTTACAACAAAAAAAAACAAGTTGTAACTATATTGTTACTTTTTATG AATATGTATAATAATAAAATTCAATTATGATTTATATTATTACATAAAATTAAAATGTTTTTAGA AATAAAATATAAAAAATATTATATGTTTTATTATATAAACTTTTTTAATTTTAATTTTTTATTTT ATTTTTTTTTTCTTTTTTCTTTCTTTTAGTAACAGAAGAATCATTCAAATTTCAATAAAGTAATT TAATTTATAATGGAAACTAAATTGTCGTATATTATAAAATTTCAATCATATTTTAAATTAAACAT ATGTAATTCTTTTAATAAAAAAAAATATATTACTATATATGAATT Right flanking sequence: Indices 616103 -- 616602 AAAATATACGTATAACAATATAACAATAAAAAAAAATGAAACTCCATTATTTTAAAATATTATTA TTGTTTGCTCATCCATTAAATATATTGTTATTATCGTCATCACATGTATTCACCAAATTATGATA ATTTTAATAATACAATATACATATATGATTATATGCACATATATATGTTACGATACCCTCCATAT AATAATTATACCTATGTATATCGATATAACTTATATATAATCATAATATATGTCCATTCATTATA TATAATAATTATAACAAAAAATATATATATATAATAATAAACTAGAACTATTACATATATATATA TAAATATATATAATTCTTTATAGGTGCATAATAAAAAAAATCCATACATAATAACATCACATACA CCAAGCCAAGAATCTCTAAAAACATGTAGATCATTGTGCGAATGTGACCTATATACGTCAATTTA TGATAATGACCCGGAAATGCAAAAAGTCATACAAGAATTTGATAA Found at i:618007 original size:25 final size:27 Alignment explanation
Indices: 617953--618007 Score: 68 Period size: 25 Copynumber: 2.1 Consensus size: 27 617943 CGTATTATAT * ** 617953 ATATATATTTATTTATTTATTTTATTA 1 ATATATATTTATTTATTTATATTAAGA * 617980 ATATATATTT-TTT-TTTATATTCAGA 1 ATATATATTTATTTATTTATATTAAGA 618005 ATA 1 ATA 618008 CAAGGAATAT Statistics Matches: 24, Mismatches: 4, Indels: 2 0.80 0.13 0.07 Matches are distributed among these distances: 25 11 0.46 26 3 0.12 27 10 0.42 ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62 Consensus pattern (27 bp): ATATATATTTATTTATTTATATTAAGA Left flanking sequence: Indices 617453 -- 617952 TATTATATTATTTTGGTTGAATTTACATTTTTTTTTTATTATTATAAATATATATTTTTATATGT ATTAAGTTTTATATATATATATTTTTTATTTTGTTATATTTTTATGTATTCATTATTTATTAGGT TATTTATTCCTTATATAATATGTTATTTATTTAATTGTTTATTTTTTTTTCTCTTAAAAGGATTT TTATTTTTATAAAAAATTATATTTCTAATTTCTTTTAAATATTTCACTTATATATATAATTATAT TAAATTATTTTAAAATATAATGTGACATATATTTATTAAATACCTCATATAAAATGTTATAATAT GCAACATATAAGGTAACAAATATAAAATATAATATTGTTTTTATTATATATAGAAATATTATTCA AACGATAATTATATATATATATATATATATATATATATATATATATAATATTGTTTAATATAAAT AAATACATGATTGTTCATAATGTTTCTTCAAAATACGTATTATAT Right flanking sequence: Indices 618008 -- 618507 CAAGGAATATAAAAAGTACATAAAATACATAAAAATTAAACATATAATACATGTAATACGTTAAA TATATAAAAACATAAAATAATGCAAAAAAAAATAAAAAAAAGAACCAACAAATAAATAAATAAAA ATAAACATTATTTTATTAAATTATCTACAACATGTACTACATATATTTATTCGGATAGATACGCC ACAAATATATATATATATATATATATATATATATATATGTATTATTTCGGTATGTATTCTTTTTA TTTTCTATGTATCTATTAGTTCGTTTTGTTTTATTTTCTTTTATTTCAATTTTTCTTTTTTTTAT AAACATAACTTTATATATATTTATATAACTATATAAATTAATATAATATGAAATAATATATACAA CACTATATAAAGAAATATAATACAAAATAATATATAAAAATATGGAACAGTCAAGAAAAAAATAA TACAAAAAGAAATGAAAAAAAATACACATATACAAAAATACCAAA Found at i:619390 original size:12 final size:12 Alignment explanation
Indices: 619365--619390 Score: 38 Period size: 12 Copynumber: 2.2 Consensus size: 12 619355 AATGGTGTTA * * 619365 ATTGTAATACTT 1 ATTGTAAAAATT 619377 ATTGTAAAAATT 1 ATTGTAAAAATT 619389 AT 1 AT 619391 AAAAAAATTT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.42, C:0.04, G:0.08, T:0.46 Consensus pattern (12 bp): ATTGTAAAAATT Left flanking sequence: Indices 618865 -- 619364 GAACGAAATTTGCGGATGTCAAACGGAGGTCAGCAAAAAATATAACATCGATTTAGATCAATTTC GAAAACGGTACCATGAACATTATATGAATTTTTTAATAAAAGTTCTCATAATACAGATCATTTAT GTAAACTGTTAGATCGAACATATGATCCTTATAAAAATATATCAAAAGTTAAAGATATTGTACAA CAACATGTATTACAGGATATACAAAAAAAAAAAGGTTAAAAGTTATAGTGAAAAATTATTGGAGA AGAAGAAAAACTGGAAAAATTGTGGGAAAAACATTTTAAAGATAAAATAGAAGAGAAATTAAAAG AAGTGAAACAATTCTAAAAAGGATTCAAAAAGTTGAAATACATGTACTTTAGGTCGTTCGGAAGA ACAAACTTCTCAATGTTTGCGATACATGCAAAAATTTTTAGAATAGAAAACAATGATTGGGTAAC TTTTAGAAAATACTTGTAAAAGTAAACGAACTCGAAATGGTGTTA Right flanking sequence: Indices 619391 -- 619890 AAAAAAATTTTAAGTGGACGTAAAGATTGTTATGAAAAATATAAAACGGAGAATATCAAAAAAAT TTAAAAGATCACAATAAATACCGTTAGAAAAAGGTTTATTAATTAAAAGTGAAAGAAATCTAAAA AAAAAAAAAATTAAAGATATAATCCGATGTTGAGATAAATGTGGAAGTAACCATAACGTTAATTT AAATCCATTGTTTGATGAAAATGATCCTGTCACTAATAGGTCGTATTAGTGTCATTGTAGAGAAG GTAAGAAAAACAAAGGTACGTCTCCAGAATGCTCGAAACAAAAAGCAACTACTGTTTTGTCACAT AAAGGAAAATGAAAACAAGGTACACATAAGAACAAACAAAATATCGTAAATGTACCAAATAGTGT ATGCCTCCGAGACGTCACGAACTATGTATATCGAACATCAGAAAATTGGGAACAGCACATGTATC CAAATTTAATAGCGATAAATTATTTCTGGAAACAATGTTGGCAGC Found at i:619398 original size:11 final size:11 Alignment explanation
Indices: 619382--619403 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 619372 TACTTATTGT 619382 AAAAATTATAA 1 AAAAATTATAA * 619393 AAAAATTTTAA 1 AAAAATTATAA 619404 GTGGACGTAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (11 bp): AAAAATTATAA Left flanking sequence: Indices 618882 -- 619381 GTCAAACGGAGGTCAGCAAAAAATATAACATCGATTTAGATCAATTTCGAAAACGGTACCATGAA CATTATATGAATTTTTTAATAAAAGTTCTCATAATACAGATCATTTATGTAAACTGTTAGATCGA ACATATGATCCTTATAAAAATATATCAAAAGTTAAAGATATTGTACAACAACATGTATTACAGGA TATACAAAAAAAAAAAGGTTAAAAGTTATAGTGAAAAATTATTGGAGAAGAAGAAAAACTGGAAA AATTGTGGGAAAAACATTTTAAAGATAAAATAGAAGAGAAATTAAAAGAAGTGAAACAATTCTAA AAAGGATTCAAAAAGTTGAAATACATGTACTTTAGGTCGTTCGGAAGAACAAACTTCTCAATGTT TGCGATACATGCAAAAATTTTTAGAATAGAAAACAATGATTGGGTAACTTTTAGAAAATACTTGT AAAAGTAAACGAACTCGAAATGGTGTTAATTGTAATACTTATTGT Right flanking sequence: Indices 619404 -- 619903 GTGGACGTAAAGATTGTTATGAAAAATATAAAACGGAGAATATCAAAAAAATTTAAAAGATCACA ATAAATACCGTTAGAAAAAGGTTTATTAATTAAAAGTGAAAGAAATCTAAAAAAAAAAAAAATTA AAGATATAATCCGATGTTGAGATAAATGTGGAAGTAACCATAACGTTAATTTAAATCCATTGTTT GATGAAAATGATCCTGTCACTAATAGGTCGTATTAGTGTCATTGTAGAGAAGGTAAGAAAAACAA AGGTACGTCTCCAGAATGCTCGAAACAAAAAGCAACTACTGTTTTGTCACATAAAGGAAAATGAA AACAAGGTACACATAAGAACAAACAAAATATCGTAAATGTACCAAATAGTGTATGCCTCCGAGAC GTCACGAACTATGTATATCGAACATCAGAAAATTGGGAACAGCACATGTATCCAAATTTAATAGC GATAAATTATTTCTGGAAACAATGTTGGCAGCAAAACAACAAACG Found at i:620737 original size:12 final size:12 Alignment explanation
Indices: 620716--620739 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 620706 TCCAATTAAG * 620716 TTTTTTGAAAAT 1 TTTGTTGAAAAT 620728 TTTGTTGAAAAT 1 TTTGTTGAAAAT 620740 GTAACAAGAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54 Consensus pattern (12 bp): TTTGTTGAAAAT Left flanking sequence: Indices 620216 -- 620715 AAACCAACATGAAATGGTAGTATACCACAGGATAGTCGCTCCCAATTTTTACGATAATTAACTGA ATAATCACAACATGTTTGTAGGAAAAACAAAAAGGGAACTTAATCAAACATGTCAAAATAAATTT GAAGGCGCGATATCTGTTGATAATAATGTGAATATATATTGTAAAAACAAATTAGATGAATATAG AAATTGGGATGTTCATAGAAAAAATCAATGGGATGGATCGAAAGAGAATTATAAAAAGCATAAAG AAAATAACGGTTTCTCTGGAAAACAACCAAATGAACAAAATACCAAAGCATATGTAAAAAAAAAA AAAAAAAAAAAATGTAAAGAATGCCATTGCGATATTAATAATTTAGAGAATATGCATAAAAAATT AGAAAATGCCGATTTGAATACAATTAAAACAATAGTTCAAGAAGTTAAAACAAAAAAAAACTATA CCTGCACTATAACCAAAAAAAAAAAATGAAAATCATCCAATTAAG Right flanking sequence: Indices 620740 -- 621239 GTAACAAGAATGGCAAAAATTGCTGTGAACCAAATACATCCAAATCCAAAAGAATTAGTGGCAAA TCTACTTGAAAAAATAGTATGTGGCACAATGGATGTCGCAGCACGCATTAACAAATGCTAGAACA GATATACAAAAACAAAAAAAGAATCAACATGTAAGACCACATACATGTAGTACATCCATCACTTC ATCTCCCGAAAAAAATGATCATCCTGGCCATATGTGCGGTAGTGGCAACGATATTTGGAATATTC TTATACCATGTAATAATACTTGTGTGTTTTTTTTTATGTTGATGTATCCCTAAACCATACACAAA TAAACATAGACACAGATACCTCCACCCACAATACATATATAAATAGCAACAAACAAACTAATACT TTCCTTACCAATTTAACAAGTCTACATATAACAATATCTAGATACACACACATATCTCTCAATCT AAATAAATGGCATGTAAAATACACCAACATAACTATGATATATTA Found at i:621413 original size:13 final size:13 Alignment explanation
Indices: 621395--621421 Score: 40 Period size: 13 Copynumber: 2.1 Consensus size: 13 621385 ATAAAATGAG ** 621395 AAATAATTATATT 1 AAATAAAAATATT 621408 AAATAAAAATATT 1 AAATAAAAATATT 621421 A 1 A 621422 TATGATTTTT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (13 bp): AAATAAAAATATT Left flanking sequence: Indices 620895 -- 621394 AACATGTAAGACCACATACATGTAGTACATCCATCACTTCATCTCCCGAAAAAAATGATCATCCT GGCCATATGTGCGGTAGTGGCAACGATATTTGGAATATTCTTATACCATGTAATAATACTTGTGT GTTTTTTTTTATGTTGATGTATCCCTAAACCATACACAAATAAACATAGACACAGATACCTCCAC CCACAATACATATATAAATAGCAACAAACAAACTAATACTTTCCTTACCAATTTAACAAGTCTAC ATATAACAATATCTAGATACACACACATATCTCTCAATCTAAATAAATGGCATGTAAAATACACC AACATAACTATGATATATTATATTATATATAATAAAATTAAATGTTATGTTATATATGTAAAGAT AAAAATCTTATATATAAAGAGAATAGTAAAATTTAAAATATAAAAATGTGTATTTATTTTTTTAA ATATGTTTATATTTGAAAGGGGAGAAAGATATAAAATAAAATGAG Right flanking sequence: Indices 621422 -- 621921 TATGATTTTTAATAAAATTTTTATATTATATATACATATAAATATTTGTATTGTTATACATTTCT CTTTTTGATATATATATTTTTATAAGTGTTTTTGTTAAATTAAAATATAAATATAAATATAATTT GTGGTTAAAATAAAAAATGATAATATGAAATAATATATATATATATATATTTATAATAAAATTAA GATAAAATAAATTCTAAGGTATTTAGTATATTTTTGGTTTTCACTATAATATTATAATGATATAT ATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATATGTTGAGTAAAA AATATGTATGTGAATACACAGAACCATAAAAATAATATTTTAAGAATAATAATAAATAATGAATG AATTTTACTTTTTTTAAATATATATTTTGTATTTTGTTAAATAATAATTATTATTATTGATTATA TATATATATATATTTTTTTTTGGTGAGGATTTAGTGCGTTAAATA Found at