TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739977 P. falciparum 3D7 GENOMIC pfal_chr5 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1343552 ACGTcount: A:0.41, C:0.10, G:0.10, T:0.40 Found at i: i:936823 original size:11 final size:11 Alignment explanation
Indices: 936800--936823 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 936790 TATTTATTTT * 936800 ATATAAAAGAA 1 ATATAAAAAAA * 936811 ATATATAAAAA 1 ATATAAAAAAA 936822 AT 1 AT 936824 TTTAATTATA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25 Consensus pattern (11 bp): ATATAAAAAAA Left flanking sequence: Indices 936300 -- 936799 AAAAGGTTTAAGCGGAAACTTTTATCATAAAAGGACAACTTTTAAAACGTTATAATATGAGGGGT ATAAAAGACAACATAAATATGTACATATATTTATTATTTTAGAAAAAATAGGATATTTTATGTAT GAACGTTAAAAAAAATTTTTTTTTTTTTCTTTTATAATTTAATTAAACTTATAAAATTTTGAAAT ATGTTTAATTATATATATATATGTATATATATTTGTTTTTTTTGTTAAAAGGATGCTTTAAAATT AATTAAAAGAGTTTTGTTCATAGTTATATATATATAGGTAAACATATGAAATATAATTTAATTTT TGTATATTAAAAAAAAATTATATAACAAGCATTACTATTATATTATTATTATTATATAATATTTA TATCCTTGTAAAAAAAAGGAAAAAAATATATGATTCATATATGCTTATTATTAATTGTATAGTTT ATTCCAATGAGTATTATTATAAATAAGTCGCAAGGTATTTATTTT Right flanking sequence: Indices 936824 -- 937323 TTTAATTATAAGATATGAAATGAATTTGAAATATATGTAAAATATTTATGTTTTTTCGCACGTAA TAATTAGCTTATTTGTTTTTAATAAATATATTATATACAAATAGGTATATATATATTATATATAT ATTATATATATATATTTAATTTACACACAAAAAAAATTGTTGGAAAAAAAAAAAAAAAAAAAAAA AGATTGACAAAAAAAAAAATATTTTTTTAAAAAATGAACTTACAAGATAATCGGGATATAAAATA TTACATAATTTTATATTATTTATATATTTTAAACCTTTTTATATGAATTAATATGTTTAAATATT ATATTAATGCTAATATAACAAATCATTTTTAATTATTTTATCATTTTTATGCTGAACATTTCGAA TAAAATGAACAAATGAAGATATGGATATTATTTTTTTTGTTTTGTAAGAGCGTGTTGAATTTTAA ATTGAAACAAAATGTGTCAAATATTTATATAATGAATAGAGAGCC Found at i:936950 original size:11 final size:11 Alignment explanation
Indices: 936934--936966 Score: 66 Period size: 11 Copynumber: 3.0 Consensus size: 11 936924 TACAAATAGG 936934 TATATATATAT 1 TATATATATAT 936945 TATATATATAT 1 TATATATATAT 936956 TATATATATAT 1 TATATATATAT 936967 ATTTAATTTA Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 22 1.00 ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55 Consensus pattern (11 bp): TATATATATAT Left flanking sequence: Indices 936434 -- 936933 GTTAAAAAAAATTTTTTTTTTTTTCTTTTATAATTTAATTAAACTTATAAAATTTTGAAATATGT TTAATTATATATATATATGTATATATATTTGTTTTTTTTGTTAAAAGGATGCTTTAAAATTAATT AAAAGAGTTTTGTTCATAGTTATATATATATAGGTAAACATATGAAATATAATTTAATTTTTGTA TATTAAAAAAAAATTATATAACAAGCATTACTATTATATTATTATTATTATATAATATTTATATC CTTGTAAAAAAAAGGAAAAAAATATATGATTCATATATGCTTATTATTAATTGTATAGTTTATTC CAATGAGTATTATTATAAATAAGTCGCAAGGTATTTATTTTATATAAAAGAAATATATAAAAAAT TTTAATTATAAGATATGAAATGAATTTGAAATATATGTAAAATATTTATGTTTTTTCGCACGTAA TAATTAGCTTATTTGTTTTTAATAAATATATTATATACAAATAGG Right flanking sequence: Indices 936967 -- 937466 ATTTAATTTACACACAAAAAAAATTGTTGGAAAAAAAAAAAAAAAAAAAAAAAGATTGACAAAAA AAAAAATATTTTTTTAAAAAATGAACTTACAAGATAATCGGGATATAAAATATTACATAATTTTA TATTATTTATATATTTTAAACCTTTTTATATGAATTAATATGTTTAAATATTATATTAATGCTAA TATAACAAATCATTTTTAATTATTTTATCATTTTTATGCTGAACATTTCGAATAAAATGAACAAA TGAAGATATGGATATTATTTTTTTTGTTTTGTAAGAGCGTGTTGAATTTTAAATTGAAACAAAAT GTGTCAAATATTTATATAATGAATAGAGAGCCCTTAAAATATATATCAAATAAAAGAAATACTTC ATTATTGGCACATACAAATAAAAATTTCAGGAAATTAGGAAGGGATAGAGCTCAAAGGAGAGCTC TTCTAAGGGCATTAACAACTAGTGTAATATTTTTATTCATACAAA Found at i:937557 original size:12 final size:12 Alignment explanation
Indices: 937524--937559 Score: 58 Period size: 12 Copynumber: 3.0 Consensus size: 12 937514 AAACAATTAC * 937524 ATAAATATAAAT 1 ATAAATATATAT 937536 ATAAATATATAT 1 ATAAATATATAT * 937548 ATATATATATAT 1 ATAAATATATAT 937560 TTCACCATTT Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 22 1.00 ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42 Consensus pattern (12 bp): ATAAATATATAT Left flanking sequence: Indices 937024 -- 937523 GACAAAAAAAAAAATATTTTTTTAAAAAATGAACTTACAAGATAATCGGGATATAAAATATTACA TAATTTTATATTATTTATATATTTTAAACCTTTTTATATGAATTAATATGTTTAAATATTATATT AATGCTAATATAACAAATCATTTTTAATTATTTTATCATTTTTATGCTGAACATTTCGAATAAAA TGAACAAATGAAGATATGGATATTATTTTTTTTGTTTTGTAAGAGCGTGTTGAATTTTAAATTGA AACAAAATGTGTCAAATATTTATATAATGAATAGAGAGCCCTTAAAATATATATCAAATAAAAGA AATACTTCATTATTGGCACATACAAATAAAAATTTCAGGAAATTAGGAAGGGATAGAGCTCAAAG GAGAGCTCTTCTAAGGGCATTAACAACTAGTGTAATATTTTTATTCATACAAAAAAAAAAAAAAA AAAAAAAAAGATTAATATAAAAAAGAATATTAAATAAACAATTAC Right flanking sequence: Indices 937560 -- 938059 TTCACCATTTTATAGTTACTGAGGTATGGTAAAATAGTAACGACTGAAGCAAAAGCAAAGGAGAC TAGAAGAAAAGTTGATAGAATAATAACATATGCTAAAAAGCATGATAACAATAGGCAGTACGCTT ATAGATTGATAGCTAATTATGTTTATGATAGAGAATTGGCCCTTAACGTAGTTAAACAGGTATAA AAAAAAATATATATATATATATATATATATATATATATATTAGATACTTCCAAATGTATTGATAC ACACATATTATATCTATATATATATCTTTCTCCATATATATATGCTTTTAATTTTCTTTTATTAT ATTTATATTCTTGTATATTTTTAATTTTGTTTATTAAAAGGCCCCTGTTAGATATAAAGAAAGAC ATGGAGGATACACAAAAATTAAGCTTTTACCAAAAAGTAGAAAAGGAGACGCATCAAGAATGGCT ATGTTGGAACTTCTTTAAATTTCATTTTACTTATCTAATATTTAT Found at i:937845 original size:12 final size:11 Alignment explanation
Indices: 937824--937846 Score: 37 Period size: 12 Copynumber: 2.0 Consensus size: 11 937814 TGATACACAC 937824 ATATTATATCT 1 ATATTATATCT 937835 ATATATATATCT 1 ATAT-TATATCT 937847 TTCTCCATAT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 11 4 0.36 12 7 0.64 ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52 Consensus pattern (11 bp): ATATTATATCT Left flanking sequence: Indices 937324 -- 937823 CTTAAAATATATATCAAATAAAAGAAATACTTCATTATTGGCACATACAAATAAAAATTTCAGGA AATTAGGAAGGGATAGAGCTCAAAGGAGAGCTCTTCTAAGGGCATTAACAACTAGTGTAATATTT TTATTCATACAAAAAAAAAAAAAAAAAAAAAAAAGATTAATATAAAAAAGAATATTAAATAAACA ATTACATAAATATAAATATAAATATATATATATATATATATTTCACCATTTTATAGTTACTGAGG TATGGTAAAATAGTAACGACTGAAGCAAAAGCAAAGGAGACTAGAAGAAAAGTTGATAGAATAAT AACATATGCTAAAAAGCATGATAACAATAGGCAGTACGCTTATAGATTGATAGCTAATTATGTTT ATGATAGAGAATTGGCCCTTAACGTAGTTAAACAGGTATAAAAAAAAATATATATATATATATAT ATATATATATATATATTAGATACTTCCAAATGTATTGATACACAC Right flanking sequence: Indices 937847 -- 938346 TTCTCCATATATATATGCTTTTAATTTTCTTTTATTATATTTATATTCTTGTATATTTTTAATTT TGTTTATTAAAAGGCCCCTGTTAGATATAAAGAAAGACATGGAGGATACACAAAAATTAAGCTTT TACCAAAAAGTAGAAAAGGAGACGCATCAAGAATGGCTATGTTGGAACTTCTTTAAATTTCATTT TACTTATCTAATATTTATAATCTTTTTGTTTTTATTTATTTTATTTTATATTTTTTTTTTTTTGT GTAGTTTTTTAATAATTATAAATAAATATTATAATAACATACTATTAATATATATATATATATAT ATATATATATATATATATATATGTGTGTATATTTATTATATCTTTGATTATTTTTCAAATGTTGA ATACATTTTGTATATATATCATATATGAATATAAAATGCAGCCTATTGTAAATAATTGGTTGCAC GTTTATATACAATATGTTTAAATTTTTTTTTTTTTTTTTTTTTTT Found at i:937903 original size:16 final size:16 Alignment explanation
Indices: 937882--937919 Score: 48 Period size: 16 Copynumber: 2.4 Consensus size: 16 937872 TTTCTTTTAT * 937882 TATATTTATATTCTTG 1 TATATTTATAATCTTG * * 937898 TATATTTTTAATTTTG 1 TATATTTATAATCTTG * 937914 TTTATT 1 TATATT 937920 AAAAGGCCCC Statistics Matches: 18, Mismatches: 4, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 16 18 1.00 ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68 Consensus pattern (16 bp): TATATTTATAATCTTG Left flanking sequence: Indices 937382 -- 937881 TTCAGGAAATTAGGAAGGGATAGAGCTCAAAGGAGAGCTCTTCTAAGGGCATTAACAACTAGTGT AATATTTTTATTCATACAAAAAAAAAAAAAAAAAAAAAAAAGATTAATATAAAAAAGAATATTAA ATAAACAATTACATAAATATAAATATAAATATATATATATATATATATTTCACCATTTTATAGTT ACTGAGGTATGGTAAAATAGTAACGACTGAAGCAAAAGCAAAGGAGACTAGAAGAAAAGTTGATA GAATAATAACATATGCTAAAAAGCATGATAACAATAGGCAGTACGCTTATAGATTGATAGCTAAT TATGTTTATGATAGAGAATTGGCCCTTAACGTAGTTAAACAGGTATAAAAAAAAATATATATATA TATATATATATATATATATATATTAGATACTTCCAAATGTATTGATACACACATATTATATCTAT ATATATATCTTTCTCCATATATATATGCTTTTAATTTTCTTTTAT Right flanking sequence: Indices 937920 -- 938419 AAAAGGCCCCTGTTAGATATAAAGAAAGACATGGAGGATACACAAAAATTAAGCTTTTACCAAAA AGTAGAAAAGGAGACGCATCAAGAATGGCTATGTTGGAACTTCTTTAAATTTCATTTTACTTATC TAATATTTATAATCTTTTTGTTTTTATTTATTTTATTTTATATTTTTTTTTTTTTGTGTAGTTTT TTAATAATTATAAATAAATATTATAATAACATACTATTAATATATATATATATATATATATATAT ATATATATATATATGTGTGTATATTTATTATATCTTTGATTATTTTTCAAATGTTGAATACATTT TGTATATATATCATATATGAATATAAAATGCAGCCTATTGTAAATAATTGGTTGCACGTTTATAT ACAATATGTTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACACAAATATTATATATATA ATATCTTATTTTGTATATTATTTGGATATATTTTTATTTTTATTT Found at i:938093 original size:16 final size:15 Alignment explanation
Indices: 938065--938104 Score: 50 Period size: 16 Copynumber: 2.6 Consensus size: 15 938055 TTTATAATCT * 938065 TTTTGTTTTTATTTA 1 TTTTATTTTTATTTA * 938080 TTTTATTTTATATTTT 1 TTTTATTTT-TATTTA * 938096 TTTTTTTTT 1 TTTTATTTT 938105 GTGTAGTTTT Statistics Matches: 21, Mismatches: 3, Indels: 1 0.84 0.12 0.04 Matches are distributed among these distances: 15 8 0.38 16 13 0.62 ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85 Consensus pattern (15 bp): TTTTATTTTTATTTA Left flanking sequence: Indices 937565 -- 938064 CATTTTATAGTTACTGAGGTATGGTAAAATAGTAACGACTGAAGCAAAAGCAAAGGAGACTAGAA GAAAAGTTGATAGAATAATAACATATGCTAAAAAGCATGATAACAATAGGCAGTACGCTTATAGA TTGATAGCTAATTATGTTTATGATAGAGAATTGGCCCTTAACGTAGTTAAACAGGTATAAAAAAA AATATATATATATATATATATATATATATATATATTAGATACTTCCAAATGTATTGATACACACA TATTATATCTATATATATATCTTTCTCCATATATATATGCTTTTAATTTTCTTTTATTATATTTA TATTCTTGTATATTTTTAATTTTGTTTATTAAAAGGCCCCTGTTAGATATAAAGAAAGACATGGA GGATACACAAAAATTAAGCTTTTACCAAAAAGTAGAAAAGGAGACGCATCAAGAATGGCTATGTT GGAACTTCTTTAAATTTCATTTTACTTATCTAATATTTATAATCT Right flanking sequence: Indices 938105 -- 938604 GTGTAGTTTTTTAATAATTATAAATAAATATTATAATAACATACTATTAATATATATATATATAT ATATATATATATATATATATATATGTGTGTATATTTATTATATCTTTGATTATTTTTCAAATGTT GAATACATTTTGTATATATATCATATATGAATATAAAATGCAGCCTATTGTAAATAATTGGTTGC ACGTTTATATACAATATGTTTAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACACAAATAT TATATATATAATATCTTATTTTGTATATTATTTGGATATATTTTTATTTTTATTTTTTTTTTGAA ACATAAACTTTAACATTATATATATATAAATTAAAATTACTTAAATCGATAAATATATATATATA TTTATATATATATATATATATATATATATATTATATAATATTTTTTTTTTTTGAAGTGTGATATA TAAAATGTTCGAAATAAAAAAAAAACTGGTAAAAAAATATATACA Found at i:938406 original size:13 final size:13 Alignment explanation
Indices: 938375--938406 Score: 43 Period size: 12 Copynumber: 2.5 Consensus size: 13 938365 TATATATATA * * 938375 ATATCTTATTTTG 1 ATATATTATTTGG 938388 -TATATTATTTGG 1 ATATATTATTTGG 938400 ATATATT 1 ATATATT 938407 TTTATTTTTA Statistics Matches: 16, Mismatches: 2, Indels: 2 0.80 0.10 0.10 Matches are distributed among these distances: 12 10 0.62 13 6 0.38 ACGTcount: A:0.28, C:0.03, G:0.09, T:0.59 Consensus pattern (13 bp): ATATATTATTTGG Left flanking sequence: Indices 937875 -- 938374 CTTTTATTATATTTATATTCTTGTATATTTTTAATTTTGTTTATTAAAAGGCCCCTGTTAGATAT AAAGAAAGACATGGAGGATACACAAAAATTAAGCTTTTACCAAAAAGTAGAAAAGGAGACGCATC AAGAATGGCTATGTTGGAACTTCTTTAAATTTCATTTTACTTATCTAATATTTATAATCTTTTTG TTTTTATTTATTTTATTTTATATTTTTTTTTTTTTGTGTAGTTTTTTAATAATTATAAATAAATA TTATAATAACATACTATTAATATATATATATATATATATATATATATATATATATATATGTGTGT ATATTTATTATATCTTTGATTATTTTTCAAATGTTGAATACATTTTGTATATATATCATATATGA ATATAAAATGCAGCCTATTGTAAATAATTGGTTGCACGTTTATATACAATATGTTTAAATTTTTT TTTTTTTTTTTTTTTTTTTTTTTGGACACAAATATTATATATATA Right flanking sequence: Indices 938407 -- 938906 TTTATTTTTATTTTTTTTTTGAAACATAAACTTTAACATTATATATATATAAATTAAAATTACTT AAATCGATAAATATATATATATATTTATATATATATATATATATATATATATATTATATAATATT TTTTTTTTTTGAAGTGTGATATATAAAATGTTCGAAATAAAAAAAAAACTGGTAAAAAAATATAT ACATTTTATTATTTATTATAAATTATGTATATTTAATTTTACCTTAAAATACATATATATAGTAT TACAATTTAATTATGTAACAATATTATATATCATTTCACTAATTATGGTTGCCCTTTGCATATTC ACTGATTTTATATATTTATGTTTTTTTTAATTTTACACAAAAAATTAAAATATTATGTACTATGT AAATTAAACTGGAAAATAGAAAATACACAAATATAAAGGAGAAATAAATAAATAAATAAAATTCT TTTTCATTTAAATTCAAAATAATTTAAATTTTATTTATATATATA Found at i:939374 original size:26 final size:26 Alignment explanation
Indices: 939324--939378 Score: 66 Period size: 26 Copynumber: 2.1 Consensus size: 26 939314 TTATTTATTT * * 939324 ATTTTATTTTTTTTTTTAATAATATA 1 ATTTTATTTATTTTTCTAATAATATA * * 939350 ATTTTATTGTATTTTTCTCAT-ATATT 1 ATTTTATT-TATTTTTCTAATAATATA 939376 ATT 1 ATT 939379 ATTAAATCAT Statistics Matches: 24, Mismatches: 4, Indels: 2 0.80 0.13 0.07 Matches are distributed among these distances: 26 15 0.62 27 9 0.38 ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67 Consensus pattern (26 bp): ATTTTATTTATTTTTCTAATAATATA Left flanking sequence: Indices 938824 -- 939323 CAAATATAAAGGAGAAATAAATAAATAAATAAAATTCTTTTTCATTTAAATTCAAAATAATTTAA ATTTTATTTATATATATATACATATATATATATATATAAATATATTTGGAGAAAACATACACATT TATTATATATATAATAAAGAAGAAATGTTATATATATATATAATTTATATAAAATATATACAATT TTTATATTCATTATTCTTCCAATTTATTCCATTATGTTTTTTTTTTTTTTTTTTTTTTTTAATTT TAGACAATTTTTTATATATTCCTTTCTTAATATATTAATGAAAAAATGTAAAATATAAATATATA AAAAAAAAAGAAAATAGTAGAATTGTTTAAAATTTGATAATTATAATTTTTTAATTAAATAAAAT TCCAAATTAGTTCATGGTATTATATACATTTGTATATATATATATATATATATATATATATATAT ATATTTATATAATTTATATTTAAGTGAATATATTTTTATTTATTT Right flanking sequence: Indices 939379 -- 939878 ATTAAATCATAAAAATAGAAATAAAAGAAAGGAATATTATGATGTGTATATATAAAAAAAAAAAT TTATATATTACACATTTTGAATCTATGATAAAAATATATTATATATATATATATATATATATATA TATACATTTATGATAATATATTTATGCACATTTTTCTAAATTGACATAATAAATATAAACTATAA TTTTTTAATAGACAATTGTTAATTAACACATAAAATTCATATTTTACTTTTTGAAAATATATCGT TAGAAAAAATATTTATGTATACTTATAATTATTTAATACATATTGAAAACAAGACAATATAAAAA ATAATTTTTTTTGAAAATAAATAAAAATATTTATTTTATGTATATATATTTATACATGTAGATAC TGTTCAATTATATATTTCATACAATATAGAAATAATATATAAATAGAAAAAATAAAAATAAAAAA TGAAGTAGCTTTATATAAGAATTTAATAAAAAATTGACAAAAAGA Found at i:939807 original size:11 final size:11 Alignment explanation
Indices: 939791--939813 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 939781 TATTTCATAC 939791 AATATAGAAAT 1 AATATAGAAAT * 939802 AATATATAAAT 1 AATATAGAAAT 939813 A 1 A 939814 GAAAAAATAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30 Consensus pattern (11 bp): AATATAGAAAT Left flanking sequence: Indices 939291 -- 939790 TTTATATTTAAGTGAATATATTTTTATTTATTTATTTTATTTTTTTTTTTAATAATATAATTTTA TTGTATTTTTCTCATATATTATTATTAAATCATAAAAATAGAAATAAAAGAAAGGAATATTATGA TGTGTATATATAAAAAAAAAAATTTATATATTACACATTTTGAATCTATGATAAAAATATATTAT ATATATATATATATATATATATATATACATTTATGATAATATATTTATGCACATTTTTCTAAATT GACATAATAAATATAAACTATAATTTTTTAATAGACAATTGTTAATTAACACATAAAATTCATAT TTTACTTTTTGAAAATATATCGTTAGAAAAAATATTTATGTATACTTATAATTATTTAATACATA TTGAAAACAAGACAATATAAAAAATAATTTTTTTTGAAAATAAATAAAAATATTTATTTTATGTA TATATATTTATACATGTAGATACTGTTCAATTATATATTTCATAC Right flanking sequence: Indices 939814 -- 940313 GAAAAAATAAAAATAAAAAATGAAGTAGCTTTATATAAGAATTTAATAAAAAATTGACAAAAAGA TATTTTTATTTATGAAAATTAAAAGAAATATATATTATTTTATAATTGTTATATATGTGATTTTA TCTTTATTTGTTAACTTAAACGTATATATATATATATATATATATATATATTTACATATGTTTAC ATTCTCTAATTTGATTGTATGTTTGTGTAACATTCATCTTTATATCATACATATATATATACATA TCATATACATAGATACATTAATTTATTTATATAGGCATTTGTTATTTTAGGTTGTTATAATTATT AAACCTTATTATAATATAAAAGGCTTTATTTTTTCCTTGCTTACTTACTTACTTACTTACTTACT TCTTTTTTTTTTTTTTTTTTTTAATATAAATTATAGCAAAATGGAGAATTTTCATCTTCATAGTA TGATAAAAATGAACAGCACTGTGAGCTTACTCTTTGGGATTTTTT Found at i:939823 original size:13 final size:13 Alignment explanation
Indices: 939807--939834 Score: 42 Period size: 13 Copynumber: 2.2 Consensus size: 13 939797 GAAATAATAT * 939807 ATAAATAGAAAAA 1 ATAAAAAGAAAAA * 939820 ATAAAAATAAAAA 1 ATAAAAAGAAAAA 939833 AT 1 AT 939835 GAAGTAGCTT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.79, C:0.00, G:0.04, T:0.18 Consensus pattern (13 bp): ATAAAAAGAAAAA Left flanking sequence: Indices 939307 -- 939806 TATATTTTTATTTATTTATTTTATTTTTTTTTTTAATAATATAATTTTATTGTATTTTTCTCATA TATTATTATTAAATCATAAAAATAGAAATAAAAGAAAGGAATATTATGATGTGTATATATAAAAA AAAAAATTTATATATTACACATTTTGAATCTATGATAAAAATATATTATATATATATATATATAT ATATATATATACATTTATGATAATATATTTATGCACATTTTTCTAAATTGACATAATAAATATAA ACTATAATTTTTTAATAGACAATTGTTAATTAACACATAAAATTCATATTTTACTTTTTGAAAAT ATATCGTTAGAAAAAATATTTATGTATACTTATAATTATTTAATACATATTGAAAACAAGACAAT ATAAAAAATAATTTTTTTTGAAAATAAATAAAAATATTTATTTTATGTATATATATTTATACATG TAGATACTGTTCAATTATATATTTCATACAATATAGAAATAATAT Right flanking sequence: Indices 939835 -- 940334 GAAGTAGCTTTATATAAGAATTTAATAAAAAATTGACAAAAAGATATTTTTATTTATGAAAATTA AAAGAAATATATATTATTTTATAATTGTTATATATGTGATTTTATCTTTATTTGTTAACTTAAAC GTATATATATATATATATATATATATATATTTACATATGTTTACATTCTCTAATTTGATTGTATG TTTGTGTAACATTCATCTTTATATCATACATATATATATACATATCATATACATAGATACATTAA TTTATTTATATAGGCATTTGTTATTTTAGGTTGTTATAATTATTAAACCTTATTATAATATAAAA GGCTTTATTTTTTCCTTGCTTACTTACTTACTTACTTACTTACTTCTTTTTTTTTTTTTTTTTTT TAATATAAATTATAGCAAAATGGAGAATTTTCATCTTCATAGTATGATAAAAATGAACAGCACTG TGAGCTTACTCTTTGGGATTTTTTTAACAGTAATAGGATCAATAT Found at i:940728 original size:11 final size:12 Alignment explanation
Indices: 940712--940741 Score: 39 Period size: 12 Copynumber: 2.6 Consensus size: 12 940702 AAATCCTTGG 940712 TATATTT-TTTA 1 TATATTTGTTTA * 940723 TATATTTGTTTC 1 TATATTTGTTTA * 940735 AATATTT 1 TATATTT 940742 CTATCTTTTT Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 11 7 0.44 12 9 0.56 ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67 Consensus pattern (12 bp): TATATTTGTTTA Left flanking sequence: Indices 940212 -- 940711 TTTTTTTTTTTTTTAATATAAATTATAGCAAAATGGAGAATTTTCATCTTCATAGTATGATAAAA ATGAACAGCACTGTGAGCTTACTCTTTGGGATTTTTTTAACAGTAATAGGATCAATATTTATGGC TATAGCAAATACATTCATGAAATTAGGTTTGAGTGATTCGAAAAAGAAAAAGTACATGTTTACTA ATTATTCTTGTGATATGAAATGGTATATAGGATTTATTGTTTATTGTTTTGGATCCTTTTTACAT ATAATTGCCCTAGGTTTTGCCCCTGCCAGTACCTTAGCGCCCATGAATTCATTCGGTTTAATAGC GAATGCTATTGTTGCTAATATATATTTAAATGAGAAGTTAGGGAAAATAGAATTAATATCTACAT TTGGAATATTTTTTGGTATTAGCATTTGTGCATGTGCTTCCTTTTTGTGTGAAACAGAAAAAGTT CATTTTAATCCTATTCATATAATAGAGAGTTGGAAAAATCCTTGG Right flanking sequence: Indices 940742 -- 941241 CTATCTTTTTTTACATTAATATATTTAAATCATGAAGAAAATAAAATAATATCAGAAAATGAAGA AATATATGCTGCAAAAAGATATGTTGAATTAAATGTAATGGATGAAAAAAAACCTGAAACAGAAG ATGAAAATATTAGCTCCTTAATAAATAGTAAAAATATAACTGACAGTGCTAATGTATATCCTAAA ACTATTGGTTTAGCATACGGATTTTTAGCTGGATTAATTGGATCCCAATGTGTTTTAGAAATAAA AGAAATTGTTGCCTTTTTACATATAGGTCTAAATAACAAACATATATATAGAACACCTTTACCAC ACTTATGTTTTGTATTTCTTGTCATTTCTATCTATTTACAAATACATTTCTTAAACGTAGGATTA ACCAGAGGTGAAGCAACCCTAGTTGTTCCAACATATTATGTTTTTTGGACATTTTTTGGAACATT AGGTGGTTTAGTCAAATTTAACGAAATTGAAAATTTCAATTTTAA Found at i:941188 original size:11 final size:12 Alignment explanation
Indices: 941172--941196 Score: 43 Period size: 11 Copynumber: 2.2 Consensus size: 12 941162 ACATATTATG 941172 TTTTTTGG-ACA 1 TTTTTTGGAACA 941183 TTTTTTGGAACA 1 TTTTTTGGAACA 941195 TT 1 TT 941197 AGGTGGTTTA Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 11 8 0.62 12 5 0.38 ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56 Consensus pattern (12 bp): TTTTTTGGAACA Left flanking sequence: Indices 940672 -- 941171 TAATCCTATTCATATAATAGAGAGTTGGAAAAATCCTTGGTATATTTTTTATATATTTGTTTCAA TATTTCTATCTTTTTTTACATTAATATATTTAAATCATGAAGAAAATAAAATAATATCAGAAAAT GAAGAAATATATGCTGCAAAAAGATATGTTGAATTAAATGTAATGGATGAAAAAAAACCTGAAAC AGAAGATGAAAATATTAGCTCCTTAATAAATAGTAAAAATATAACTGACAGTGCTAATGTATATC CTAAAACTATTGGTTTAGCATACGGATTTTTAGCTGGATTAATTGGATCCCAATGTGTTTTAGAA ATAAAAGAAATTGTTGCCTTTTTACATATAGGTCTAAATAACAAACATATATATAGAACACCTTT ACCACACTTATGTTTTGTATTTCTTGTCATTTCTATCTATTTACAAATACATTTCTTAAACGTAG GATTAACCAGAGGTGAAGCAACCCTAGTTGTTCCAACATATTATG Right flanking sequence: Indices 941197 -- 941696 AGGTGGTTTAGTCAAATTTAACGAAATTGAAAATTTCAATTTTAATTCTATTATATTGTTTTTAG CCGGATTTCTACTCACCGTTTTATTTATATCGATTTTAGCTGTTCAAGAAATAACATTTTTACGT AAATATGTAGATAAAGAAGTACCCGATTTACCATTAGAAAATTTAGATATACATACACAAGTTTT ACAAAATAAAAAATTATCAAAACAAGTTATATTAAATATGGGTTTATTCCCTGTATCATTACTTG GAACAACTGTTGGAAGAAAAAAATTTCGTCCATTATATGAAAGATTCAGAAGAACCAGAAGTATT CTCTCGGATACACATATTGGTGATCAACATTGTGAATATTCTATTGATAATAATATATACAATGC ATATACCCTACCTTATGATATTTACAATACAAATACAGACACATTTAGCACTAAAAAGAAGAAAT ATAGACACACTGAACCAAGAATTGAAAATACATATATTTTTTAAT Found at i:941873 original size:12 final size:12 Alignment explanation
Indices: 941843--941915 Score: 83 Period size: 12 Copynumber: 6.2 Consensus size: 12 941833 TAATGCAAAC * 941843 TAAATTAAT-TA 1 TAAATAAATATA * 941854 TTAATAAATATA 1 TAAATAAATATA * 941866 TAAATAAATAAA 1 TAAATAAATATA * 941878 TAAATAAAAATA 1 TAAATAAATATA * * 941890 TATATATATATA 1 TAAATAAATATA * * 941902 TATATATATATA 1 TAAATAAATATA 941914 TA 1 TA 941916 TATGTGGAGA Statistics Matches: 52, Mismatches: 9, Indels: 1 0.84 0.15 0.02 Matches are distributed among these distances: 11 7 0.13 12 45 0.87 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (12 bp): TAAATAAATATA Left flanking sequence: Indices 941343 -- 941842 AAGTACCCGATTTACCATTAGAAAATTTAGATATACATACACAAGTTTTACAAAATAAAAAATTA TCAAAACAAGTTATATTAAATATGGGTTTATTCCCTGTATCATTACTTGGAACAACTGTTGGAAG AAAAAAATTTCGTCCATTATATGAAAGATTCAGAAGAACCAGAAGTATTCTCTCGGATACACATA TTGGTGATCAACATTGTGAATATTCTATTGATAATAATATATACAATGCATATACCCTACCTTAT GATATTTACAATACAAATACAGACACATTTAGCACTAAAAAGAAGAAATATAGACACACTGAACC AAGAATTGAAAATACATATATTTTTTAATTCAGAATACATAAAATGGGAACATATAATTCTTTCA CATACAAAATCAAAAAAAAAAAATAAATAAATAAATGTTATGATCTAAAAAATTTATATTTTCAT TAGGAAAATAGTTTCTAACAATAAATAAACATATATAATGCAAAC Right flanking sequence: Indices 941916 -- 942415 TATGTGGAGAGAGAGAAATTATATATATTCATGTGTGTGTATTATTAGGTTATCATTTTCTCTTT TTTTTCGTGTTTATAAAAGAATTAAAAAAAAAAATTTTTTTTTGTTCTACTATATATACATTTAT GTGTATATTTCATTTTTTTTATTTTTATTTTTTTTTATTTTTTTTTTTTTTTTTTTTGGCTATTT TGTTCTTTTAAATATCTTTTAAAACATTTCCCTATATTATTCTAATTATTTTAGTTTTTTTTTTT TTACACGTTTTTCCATATATAGATGTTATTATTTATCAGTATTTGTATAAATATTATATTATAGA TATACTATTTATATTTATTTTGATATATATATATATATATATATATTTTTTTTTATTTCACTTAA TTTTTTATTATCCAATATCTCTTTTTTTTTCTTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTT TCAATTTTCCACACTTTTTTAGTGTTATAATATTCATTTTTTTTT Found at i:942079 original size:16 final size:16 Alignment explanation
Indices: 942058--942102 Score: 76 Period size: 16 Copynumber: 2.8 Consensus size: 16 942048 GTATATTTCA 942058 TTTTTTTTATTTTTAT 1 TTTTTTTTATTTTTAT * 942074 TTTTTTTTATTTTTTT 1 TTTTTTTTATTTTTAT * 942090 TTTTTTTTTTTTT 1 TTTTTTTTATTTT 942103 GGCTATTTTG Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 27 1.00 ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93 Consensus pattern (16 bp): TTTTTTTTATTTTTAT Left flanking sequence: Indices 941558 -- 942057 TATTCTATTGATAATAATATATACAATGCATATACCCTACCTTATGATATTTACAATACAAATAC AGACACATTTAGCACTAAAAAGAAGAAATATAGACACACTGAACCAAGAATTGAAAATACATATA TTTTTTAATTCAGAATACATAAAATGGGAACATATAATTCTTTCACATACAAAATCAAAAAAAAA AAATAAATAAATAAATGTTATGATCTAAAAAATTTATATTTTCATTAGGAAAATAGTTTCTAACA ATAAATAAACATATATAATGCAAACTAAATTAATTATTAATAAATATATAAATAAATAAATAAAT AAAAATATATATATATATATATATATATATATATATGTGGAGAGAGAGAAATTATATATATTCAT GTGTGTGTATTATTAGGTTATCATTTTCTCTTTTTTTTCGTGTTTATAAAAGAATTAAAAAAAAA AATTTTTTTTTGTTCTACTATATATACATTTATGTGTATATTTCA Right flanking sequence: Indices 942103 -- 942602 GGCTATTTTGTTCTTTTAAATATCTTTTAAAACATTTCCCTATATTATTCTAATTATTTTAGTTT TTTTTTTTTTACACGTTTTTCCATATATAGATGTTATTATTTATCAGTATTTGTATAAATATTAT ATTATAGATATACTATTTATATTTATTTTGATATATATATATATATATATATATTTTTTTTTATT TCACTTAATTTTTTATTATCCAATATCTCTTTTTTTTTCTTTTTTCTCTTTTTTTTTTTTTTTTT TTTTTTTTTCAATTTTCCACACTTTTTTAGTGTTATAATATTCATTTTTTTTTAAGTTGTTAAAA ATATCCTTTTTTCTCCTTTTAATATTAAAAAGAAAAAAGGATAATTATATTATATTTACTATATA TAATAATATGCTTTTACGCATATTTGAAGTAAATAAATATAAATGTTAACATGAGCATTTTTCTT TCTCCTTATTATACATAAGAAAAAAAAAGGAATAAAATAAATGAA Found at i:942109 original size:25 final size:25 Alignment explanation
Indices: 942057--942119 Score: 77 Period size: 25 Copynumber: 2.5 Consensus size: 25 942047 TGTATATTTC * *** 942057 ATTTTTTTTATTTTTATTTTTTTTT 1 ATTTTTTTTTTTTTTATTTTTGGCT * 942082 ATTTTTTTTTTTTTTTTTTTTGGCT 1 ATTTTTTTTTTTTTTATTTTTGGCT * * 942107 ATTTTGTTCTTTT 1 ATTTTTTTTTTTT 942120 AAATATCTTT Statistics Matches: 31, Mismatches: 7, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 25 31 1.00 ACGTcount: A:0.08, C:0.03, G:0.05, T:0.84 Consensus pattern (25 bp): ATTTTTTTTTTTTTTATTTTTGGCT Left flanking sequence: Indices 941557 -- 942056 ATATTCTATTGATAATAATATATACAATGCATATACCCTACCTTATGATATTTACAATACAAATA CAGACACATTTAGCACTAAAAAGAAGAAATATAGACACACTGAACCAAGAATTGAAAATACATAT ATTTTTTAATTCAGAATACATAAAATGGGAACATATAATTCTTTCACATACAAAATCAAAAAAAA AAAATAAATAAATAAATGTTATGATCTAAAAAATTTATATTTTCATTAGGAAAATAGTTTCTAAC AATAAATAAACATATATAATGCAAACTAAATTAATTATTAATAAATATATAAATAAATAAATAAA TAAAAATATATATATATATATATATATATATATATATGTGGAGAGAGAGAAATTATATATATTCA TGTGTGTGTATTATTAGGTTATCATTTTCTCTTTTTTTTCGTGTTTATAAAAGAATTAAAAAAAA AAATTTTTTTTTGTTCTACTATATATACATTTATGTGTATATTTC Right flanking sequence: Indices 942120 -- 942619 AAATATCTTTTAAAACATTTCCCTATATTATTCTAATTATTTTAGTTTTTTTTTTTTTACACGTT TTTCCATATATAGATGTTATTATTTATCAGTATTTGTATAAATATTATATTATAGATATACTATT TATATTTATTTTGATATATATATATATATATATATATTTTTTTTTATTTCACTTAATTTTTTATT ATCCAATATCTCTTTTTTTTTCTTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTCAATTTTC CACACTTTTTTAGTGTTATAATATTCATTTTTTTTTAAGTTGTTAAAAATATCCTTTTTTCTCCT TTTAATATTAAAAAGAAAAAAGGATAATTATATTATATTTACTATATATAATAATATGCTTTTAC GCATATTTGAAGTAAATAAATATAAATGTTAACATGAGCATTTTTCTTTCTCCTTATTATACATA AGAAAAAAAAAGGAATAAAATAAATGAATTTATATATATATATAT Found at i:942345 original size:19 final size:19 Alignment explanation
Indices: 942323--942372 Score: 79 Period size: 19 Copynumber: 2.7 Consensus size: 19 942313 TTATCCAATA 942323 TCTCTTTTTTTTTCTTTTT 1 TCTCTTTTTTTTTCTTTTT 942342 TCTCTTTTTTTTT-TTTTT 1 TCTCTTTTTTTTTCTTTTT * 942360 T-TTTTTTTTTTTC 1 TCTCTTTTTTTTTC 942373 AATTTTCCAC Statistics Matches: 29, Mismatches: 1, Indels: 3 0.88 0.03 0.09 Matches are distributed among these distances: 17 10 0.34 18 6 0.21 19 13 0.45 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (19 bp): TCTCTTTTTTTTTCTTTTT Left flanking sequence: Indices 941823 -- 942322 TAAACATATATAATGCAAACTAAATTAATTATTAATAAATATATAAATAAATAAATAAATAAAAA TATATATATATATATATATATATATATATATGTGGAGAGAGAGAAATTATATATATTCATGTGTG TGTATTATTAGGTTATCATTTTCTCTTTTTTTTCGTGTTTATAAAAGAATTAAAAAAAAAAATTT TTTTTTGTTCTACTATATATACATTTATGTGTATATTTCATTTTTTTTATTTTTATTTTTTTTTA TTTTTTTTTTTTTTTTTTTTGGCTATTTTGTTCTTTTAAATATCTTTTAAAACATTTCCCTATAT TATTCTAATTATTTTAGTTTTTTTTTTTTTACACGTTTTTCCATATATAGATGTTATTATTTATC AGTATTTGTATAAATATTATATTATAGATATACTATTTATATTTATTTTGATATATATATATATA TATATATATTTTTTTTTATTTCACTTAATTTTTTATTATCCAATA Right flanking sequence: Indices 942373 -- 942872 AATTTTCCACACTTTTTTAGTGTTATAATATTCATTTTTTTTTAAGTTGTTAAAAATATCCTTTT TTCTCCTTTTAATATTAAAAAGAAAAAAGGATAATTATATTATATTTACTATATATAATAATATG CTTTTACGCATATTTGAAGTAAATAAATATAAATGTTAACATGAGCATTTTTCTTTCTCCTTATT ATACATAAGAAAAAAAAAGGAATAAAATAAATGAATTTATATATATATATATATATATTATATTT ATTTAATAAAAAAGAAAAGAAAAATTACAAAAGTATCGTTTCTTCATTTTTCATAATTTCATTAA ATTTCATATTTGTTAAAATGCTATTTTCTCATTTTAAAGAAAATAATATTTCAAATGAATAAAAA TGACAATACACATTTTTTTGTGTTTTCTCTTGATACTTAAAATTGTTAATGCCTTAAAATCAAAT AGGTTTAGTTCATATATATATACTCCAAAAACATTTTTATATAAC Found at i:942423 original size:27 final size:25 Alignment explanation
Indices: 942385--942439 Score: 62 Period size: 27 Copynumber: 2.1 Consensus size: 25 942375 TTTTCCACAC * 942385 TTTTTTAGTGTT-ATAATATTCATTT 1 TTTTTTAGTGTTAAAAATA-TCATTT * 942410 TTTTTTAAGTTGTTAAAAATATCCTTT 1 TTTTTT-AG-TGTTAAAAATATCATTT 942437 TTT 1 TTT 942440 CTCCTTTTAA Statistics Matches: 25, Mismatches: 2, Indels: 4 0.81 0.06 0.13 Matches are distributed among these distances: 25 6 0.24 26 2 0.08 27 12 0.48 28 5 0.20 ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62 Consensus pattern (25 bp): TTTTTTAGTGTTAAAAATATCATTT Left flanking sequence: Indices 941885 -- 942384 AAATATATATATATATATATATATATATATATATGTGGAGAGAGAGAAATTATATATATTCATGT GTGTGTATTATTAGGTTATCATTTTCTCTTTTTTTTCGTGTTTATAAAAGAATTAAAAAAAAAAA TTTTTTTTTGTTCTACTATATATACATTTATGTGTATATTTCATTTTTTTTATTTTTATTTTTTT TTATTTTTTTTTTTTTTTTTTTTGGCTATTTTGTTCTTTTAAATATCTTTTAAAACATTTCCCTA TATTATTCTAATTATTTTAGTTTTTTTTTTTTTACACGTTTTTCCATATATAGATGTTATTATTT ATCAGTATTTGTATAAATATTATATTATAGATATACTATTTATATTTATTTTGATATATATATAT ATATATATATATTTTTTTTTATTTCACTTAATTTTTTATTATCCAATATCTCTTTTTTTTTCTTT TTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTCAATTTTCCACAC Right flanking sequence: Indices 942440 -- 942939 CTCCTTTTAATATTAAAAAGAAAAAAGGATAATTATATTATATTTACTATATATAATAATATGCT TTTACGCATATTTGAAGTAAATAAATATAAATGTTAACATGAGCATTTTTCTTTCTCCTTATTAT ACATAAGAAAAAAAAAGGAATAAAATAAATGAATTTATATATATATATATATATATTATATTTAT TTAATAAAAAAGAAAAGAAAAATTACAAAAGTATCGTTTCTTCATTTTTCATAATTTCATTAAAT TTCATATTTGTTAAAATGCTATTTTCTCATTTTAAAGAAAATAATATTTCAAATGAATAAAAATG ACAATACACATTTTTTTGTGTTTTCTCTTGATACTTAAAATTGTTAATGCCTTAAAATCAAATAG GTTTAGTTCATATATATATACTCCAAAAACATTTTTATATAACAATAAGAGCATACCAAATAAAA AGCTCGTACGTAAATTTGTTAACAGAATAAAATTGGTGGATGATA Found at i:942603 original size:13 final size:13 Alignment explanation
Indices: 942578--942603 Score: 38 Period size: 13 Copynumber: 2.0 Consensus size: 13 942568 ATACATAAGA 942578 AAAAAAAAGGAAT 1 AAAAAAAAGGAAT * * 942591 AAAATAAATGAAT 1 AAAAAAAAGGAAT 942604 TTATATATAT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 13 11 1.00 ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15 Consensus pattern (13 bp): AAAAAAAAGGAAT Left flanking sequence: Indices 942078 -- 942577 TTTTATTTTTTTTTTTTTTTTTTTTGGCTATTTTGTTCTTTTAAATATCTTTTAAAACATTTCCC TATATTATTCTAATTATTTTAGTTTTTTTTTTTTTACACGTTTTTCCATATATAGATGTTATTAT TTATCAGTATTTGTATAAATATTATATTATAGATATACTATTTATATTTATTTTGATATATATAT ATATATATATATATTTTTTTTTATTTCACTTAATTTTTTATTATCCAATATCTCTTTTTTTTTCT TTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTCAATTTTCCACACTTTTTTAGTGTTATAATA TTCATTTTTTTTTAAGTTGTTAAAAATATCCTTTTTTCTCCTTTTAATATTAAAAAGAAAAAAGG ATAATTATATTATATTTACTATATATAATAATATGCTTTTACGCATATTTGAAGTAAATAAATAT AAATGTTAACATGAGCATTTTTCTTTCTCCTTATTATACATAAGA Right flanking sequence: Indices 942604 -- 943103 TTATATATATATATATATATATTATATTTATTTAATAAAAAAGAAAAGAAAAATTACAAAAGTAT CGTTTCTTCATTTTTCATAATTTCATTAAATTTCATATTTGTTAAAATGCTATTTTCTCATTTTA AAGAAAATAATATTTCAAATGAATAAAAATGACAATACACATTTTTTTGTGTTTTCTCTTGATAC TTAAAATTGTTAATGCCTTAAAATCAAATAGGTTTAGTTCATATATATATACTCCAAAAACATTT TTATATAACAATAAGAGCATACCAAATAAAAAGCTCGTACGTAAATTTGTTAACAGAATAAAATT GGTGGATGATACTATTAAAAGTACTAATAGCTTTTGTTTCTCTAAATATAGATAAAATATATGTT AAAAAAAATTATTTATTTTATTTTATTCTATTTTTTTTTTTTTTTTTCGTGTGTGTTTGTCCTTT TTTTCTGTAGGCAATGAGCATATAATAAAAATAACAGATAATGCA Found at i:943031 original size:14 final size:14 Alignment explanation
Indices: 943002--943040 Score: 48 Period size: 15 Copynumber: 2.7 Consensus size: 14 942992 TTAAAAAAAA 943002 TTATTTATTTTATT 1 TTATTTATTTTATT * 943016 TTATTCTATTTTTTT 1 TTATT-TATTTTATT * * 943031 TTTTTTTTTT 1 TTATTTATTT 943041 CGTGTGTGTT Statistics Matches: 21, Mismatches: 3, Indels: 2 0.81 0.12 0.08 Matches are distributed among these distances: 14 9 0.43 15 12 0.57 ACGTcount: A:0.13, C:0.03, G:0.00, T:0.85 Consensus pattern (14 bp): TTATTTATTTTATT Left flanking sequence: Indices 942502 -- 943001 GCTTTTACGCATATTTGAAGTAAATAAATATAAATGTTAACATGAGCATTTTTCTTTCTCCTTAT TATACATAAGAAAAAAAAAGGAATAAAATAAATGAATTTATATATATATATATATATATTATATT TATTTAATAAAAAAGAAAAGAAAAATTACAAAAGTATCGTTTCTTCATTTTTCATAATTTCATTA AATTTCATATTTGTTAAAATGCTATTTTCTCATTTTAAAGAAAATAATATTTCAAATGAATAAAA ATGACAATACACATTTTTTTGTGTTTTCTCTTGATACTTAAAATTGTTAATGCCTTAAAATCAAA TAGGTTTAGTTCATATATATATACTCCAAAAACATTTTTATATAACAATAAGAGCATACCAAATA AAAAGCTCGTACGTAAATTTGTTAACAGAATAAAATTGGTGGATGATACTATTAAAAGTACTAAT AGCTTTTGTTTCTCTAAATATAGATAAAATATATGTTAAAAAAAA Right flanking sequence: Indices 943041 -- 943540 CGTGTGTGTTTGTCCTTTTTTTCTGTAGGCAATGAGCATATAATAAAAATAACAGATAATGCAAC CAATAAAATTAAGGTAAGAAAGATGAAAGGGAATAAATTAAAAATGTATTTGTAAGTATATAAAT TGTTAACATTATATATATATATATATAACATATTTTCTTCTAGGAATTACAAAAGGAATGTAACG ATGATTATTTGATTTTAAAACTATACGTAGAAAATGGAGGGTGTAAAGGTCTCAAATATAAATTA AATCCCATAAAAAAGGTATAAGTATAAATATGTATAAATTATTTTTTATGTATTTTTATTCTTTT TTTACCTATTTCTTTATTATATATATATATATATATATATATATGTATTTTTTTTTTTTTTTTTT TTGATATAGAACGAAATTGAAGAAGATGATTATATACAACAATTTGATGAACTAAAATTTATCTT ATCTATAGATTCAACTAGCGTTATATATATTTATAATAATACGTT Found at i:943643 original size:18 final size:18 Alignment explanation
Indices: 943620--943655 Score: 58 Period size: 18 Copynumber: 2.0 Consensus size: 18 943610 ATATATACGA 943620 ATTTATTTTATTTTATTT 1 ATTTATTTTATTTTATTT * * 943638 ATTTATTTTTTTTTTTTT 1 ATTTATTTTATTTTATTT 943656 TTTGATTCTA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 18 16 1.00 ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83 Consensus pattern (18 bp): ATTTATTTTATTTTATTT Left flanking sequence: Indices 943120 -- 943619 TAAGAAAGATGAAAGGGAATAAATTAAAAATGTATTTGTAAGTATATAAATTGTTAACATTATAT ATATATATATATAACATATTTTCTTCTAGGAATTACAAAAGGAATGTAACGATGATTATTTGATT TTAAAACTATACGTAGAAAATGGAGGGTGTAAAGGTCTCAAATATAAATTAAATCCCATAAAAAA GGTATAAGTATAAATATGTATAAATTATTTTTTATGTATTTTTATTCTTTTTTTACCTATTTCTT TATTATATATATATATATATATATATATATGTATTTTTTTTTTTTTTTTTTTTGATATAGAACGA AATTGAAGAAGATGATTATATACAACAATTTGATGAACTAAAATTTATCTTATCTATAGATTCAA CTAGCGTTATATATATTTATAATAATACGTTAGATTATAGTAATGATTTAATTAGTGGAGGATTT AAGTAAAAAAAACCTTATAAATACATAATAAAAAAATATATACGA Right flanking sequence: Indices 943656 -- 944155 TTTGATTCTAATATTAATGTATAATTATACATAAAGGAATGTATATAATATTTTTATATTTATTC AAACATGAAAATGCTATATATGTGTGATTATATTTATGATGTAATAATTGTACTAATTTTATACA CACAATTTATTTTATTATTTTATAGGTTTATTAATCCAAACGCAACTAAAAAATGTGGTTGCGGA AAATCATTCAATGTGTGATATATGAGCAAAAATATATAAGATAACACATAAATATATATCTTTAG GATTATTTATTTTTTTTTTGTTTAGCTATTTCTTTTTTTTTTCTTTTTTTTTTTTTTTAAACATA ATTTATAAATTCTCTATTATTATCACAAAAAAAAATAAAATAAAAAATTTTTTTATATATACCAA CTGGCAATATAAATTATAACAAATAAAAATTAAAAATTAAATATATATCATTAAAATATATATAT ATATATATATATATATATATATTATACAGAATATACTGTAACACA Found at i:943760 original size:12 final size:12 Alignment explanation
Indices: 943737--943760 Score: 34 Period size: 12 Copynumber: 2.0 Consensus size: 12 943727 GAAAATGCTA * 943737 TATATGTGTGAT 1 TATATGTATGAT * 943749 TATATTTATGAT 1 TATATGTATGAT 943761 GTAATAATTG Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 10 1.00 ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54 Consensus pattern (12 bp): TATATGTATGAT Left flanking sequence: Indices 943237 -- 943736 TGATTATTTGATTTTAAAACTATACGTAGAAAATGGAGGGTGTAAAGGTCTCAAATATAAATTAA ATCCCATAAAAAAGGTATAAGTATAAATATGTATAAATTATTTTTTATGTATTTTTATTCTTTTT TTACCTATTTCTTTATTATATATATATATATATATATATATATGTATTTTTTTTTTTTTTTTTTT TGATATAGAACGAAATTGAAGAAGATGATTATATACAACAATTTGATGAACTAAAATTTATCTTA TCTATAGATTCAACTAGCGTTATATATATTTATAATAATACGTTAGATTATAGTAATGATTTAAT TAGTGGAGGATTTAAGTAAAAAAAACCTTATAAATACATAATAAAAAAATATATACGAATTTATT TTATTTTATTTATTTATTTTTTTTTTTTTTTTGATTCTAATATTAATGTATAATTATACATAAAG GAATGTATATAATATTTTTATATTTATTCAAACATGAAAATGCTA Right flanking sequence: Indices 943761 -- 944260 GTAATAATTGTACTAATTTTATACACACAATTTATTTTATTATTTTATAGGTTTATTAATCCAAA CGCAACTAAAAAATGTGGTTGCGGAAAATCATTCAATGTGTGATATATGAGCAAAAATATATAAG ATAACACATAAATATATATCTTTAGGATTATTTATTTTTTTTTTGTTTAGCTATTTCTTTTTTTT TTCTTTTTTTTTTTTTTTAAACATAATTTATAAATTCTCTATTATTATCACAAAAAAAAATAAAA TAAAAAATTTTTTTATATATACCAACTGGCAATATAAATTATAACAAATAAAAATTAAAAATTAA ATATATATCATTAAAATATATATATATATATATATATATATATATATTATACAGAATATACTGTA ACACATATGAATGTATATATATAGGAAATTAATTATCTCCACTTGCACAACCCCTACATCCACAA TTTACACATTGTAATACCTATATAATGCAAGAAAAATAAAAAATA Found at i:944098 original size:21 final size:23 Alignment explanation
Indices: 944074--944116 Score: 65 Period size: 23 Copynumber: 2.0 Consensus size: 23 944064 ACAAATAAAA 944074 ATTAAAA-AT-TAAATATATATC 1 ATTAAAATATATAAATATATATC * 944095 ATTAAAATATATATATATATAT 1 ATTAAAATATATAAATATATAT 944117 ATATATATAT Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 21 7 0.37 22 2 0.11 23 10 0.53 ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42 Consensus pattern (23 bp): ATTAAAATATATAAATATATATC Left flanking sequence: Indices 943574 -- 944073 TAAGTAAAAAAAACCTTATAAATACATAATAAAAAAATATATACGAATTTATTTTATTTTATTTA TTTATTTTTTTTTTTTTTTTGATTCTAATATTAATGTATAATTATACATAAAGGAATGTATATAA TATTTTTATATTTATTCAAACATGAAAATGCTATATATGTGTGATTATATTTATGATGTAATAAT TGTACTAATTTTATACACACAATTTATTTTATTATTTTATAGGTTTATTAATCCAAACGCAACTA AAAAATGTGGTTGCGGAAAATCATTCAATGTGTGATATATGAGCAAAAATATATAAGATAACACA TAAATATATATCTTTAGGATTATTTATTTTTTTTTTGTTTAGCTATTTCTTTTTTTTTTCTTTTT TTTTTTTTTTAAACATAATTTATAAATTCTCTATTATTATCACAAAAAAAAATAAAATAAAAAAT TTTTTTATATATACCAACTGGCAATATAAATTATAACAAATAAAA Right flanking sequence: Indices 944117 -- 944616 ATATATATATATATATTATACAGAATATACTGTAACACATATGAATGTATATATATAGGAAATTA ATTATCTCCACTTGCACAACCCCTACATCCACAATTTACACATTGTAATACCTATATAATGCAAG AAAAATAAAAAATATAATGTTCTTTTAATATATACATTTTTTATTTAAAGAATGGGATTTTTATA ATATTATATACATATATATATATATATATATATATATATATATATATATATATGTTTTTATTTCA TGTATATTTTTCTTAAATTACCTTATTTCCTAAATCACTTTTTGGTACCCTACATATACATGTAT TACTAAAATTACTGTCTGATACTTGTATACATTTTAAGCAGCACAAATTTTCATATCCCTGCTTT CTCCATTTAGAAATTAAAGCCCCATCTACGTACTTTTCTTGAACTAAATAATCATATAGCTCTCC TAAAGAATGAAATAAAATTAATATAAACAAATATATTTTATAAAT Found at i:944106 original size:13 final size:14 Alignment explanation
Indices: 944081--944132 Score: 53 Period size: 14 Copynumber: 3.9 Consensus size: 14 944071 AAAATTAAAA 944081 ATTAAATATATATC 1 ATTAAATATATATC 944095 ATTAAA-ATATAT- 1 ATTAAATATATATC * 944107 A-TATATATATAT- 1 ATTAAATATATATC * 944119 ATATATATATATAT 1 AT-TAAATATATAT 944133 TATACAGAAT Statistics Matches: 34, Mismatches: 1, Indels: 6 0.83 0.02 0.15 Matches are distributed among these distances: 11 3 0.09 12 8 0.24 13 6 0.18 14 17 0.50 ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46 Consensus pattern (14 bp): ATTAAATATATATC Left flanking sequence: Indices 943581 -- 944080 AAAAAACCTTATAAATACATAATAAAAAAATATATACGAATTTATTTTATTTTATTTATTTATTT TTTTTTTTTTTTTGATTCTAATATTAATGTATAATTATACATAAAGGAATGTATATAATATTTTT ATATTTATTCAAACATGAAAATGCTATATATGTGTGATTATATTTATGATGTAATAATTGTACTA ATTTTATACACACAATTTATTTTATTATTTTATAGGTTTATTAATCCAAACGCAACTAAAAAATG TGGTTGCGGAAAATCATTCAATGTGTGATATATGAGCAAAAATATATAAGATAACACATAAATAT ATATCTTTAGGATTATTTATTTTTTTTTTGTTTAGCTATTTCTTTTTTTTTTCTTTTTTTTTTTT TTTAAACATAATTTATAAATTCTCTATTATTATCACAAAAAAAAATAAAATAAAAAATTTTTTTA TATATACCAACTGGCAATATAAATTATAACAAATAAAAATTAAAA Right flanking sequence: Indices 944133 -- 944632 TATACAGAATATACTGTAACACATATGAATGTATATATATAGGAAATTAATTATCTCCACTTGCA CAACCCCTACATCCACAATTTACACATTGTAATACCTATATAATGCAAGAAAAATAAAAAATATA ATGTTCTTTTAATATATACATTTTTTATTTAAAGAATGGGATTTTTATAATATTATATACATATA TATATATATATATATATATATATATATATATATATATGTTTTTATTTCATGTATATTTTTCTTAA ATTACCTTATTTCCTAAATCACTTTTTGGTACCCTACATATACATGTATTACTAAAATTACTGTC TGATACTTGTATACATTTTAAGCAGCACAAATTTTCATATCCCTGCTTTCTCCATTTAGAAATTA AAGCCCCATCTACGTACTTTTCTTGAACTAAATAATCATATAGCTCTCCTAAAGAATGAAATAAA ATTAATATAAACAAATATATTTTATAAATATGTGATTATTTAATT Found at i:945158 original size:16 final size:16 Alignment explanation
Indices: 945137--945187 Score: 81 Period size: 16 Copynumber: 3.2 Consensus size: 16 945127 TAGTTCATTA * 945137 TTTATTTTTATTTTAT 1 TTTATTTTTATTTTTT * 945153 TTTATTTTTATTTATT 1 TTTATTTTTATTTTTT * 945169 TTTATTTTTTTTTTTT 1 TTTATTTTTATTTTTT 945185 TTT 1 TTT 945188 TCAACTTTAA Statistics Matches: 31, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 16 31 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (16 bp): TTTATTTTTATTTTTT Left flanking sequence: Indices 944637 -- 945136 TATTATTATATATATATATATATGCACCAATGTACTTATATATAAATTTATATATTTTTTTTTAT TTATTTACTTGATATTTCTTTCCTTTTATAATATAATTCATATATGTAACGAGATGTTTTATGGT TTATTTGAAAAATTGGCCATAATATTTCATTTTTCCTTTTTTTAGAAGTATCTTCATTTTCTAAA CTTCTCATTTTTTTATTCATTTCTTCTAAAAAGGACTCAACCTTATGCCAACCTTCAGGTGGCTT TCTTGAATTCATAGTTCTTATACGTGGCATTTTGTATATATCACATTAAAAGAAAAAAATATATG TTTATTTACTTTAATAATTTCGTTCTTTATTTTTTTTGTTAAAATTAAAAATATTAACCATTCGA ATAAGAAAAAAAAAAAAAAAAAAAATGGAACTTTTAATATTTTATATATTCTTAAAGAAATAATA TGAATTACAAAATTTATGATGTAACATTTTTGTTATAGTTCATTA Right flanking sequence: Indices 945188 -- 945687 TCAACTTTAATTTGGAATAAATTTATAATCTATGAAATATTTTAATATTCACTATTAATTAAAAT ACAATTAAGAAAGAAAAAATATTACATATGTTTTGAACTATATATTCTTATTTTTTATTATATAA AATTTTAAAATAAATGAGTATAAGGTAAAAGCATAAATATATTTTTTTTGTATATATATAAATAA TATATAAATATATATATATTTATTTATTATTATAGAACATATTTAAATACATGGTATTTTATTAT AGGTATGATTTATATTGTGTTAAGCTTATTTTCTTTATATTTTTATATTATTATAGTATTTTCTT CCGAATATATTATTCTTTGTTACCATTTATATATTCTTATAACTTTTATGTTTAAGCACCAAATC CTTATAATTTTTTTGGATCATGTTGAAAATATGTTAAATCATGTAGGATAATTATTTTTAAATAA TCAACTTTTTATTATATTTGTATATGTTGTGATTTTATAAGAGCA Found at i:945166 original size:26 final size:26 Alignment explanation
Indices: 945134--945187 Score: 94 Period size: 26 Copynumber: 2.1 Consensus size: 26 945124 TTATAGTTCA 945134 TTATTTATTTTTATTTTATTTTATTT 1 TTATTTATTTTTATTTTATTTTATTT * * 945160 TTATTTATTTTTATTTTTTTTTTTTT 1 TTATTTATTTTTATTTTATTTTATTT 945186 TT 1 TT 945188 TCAACTTTAA Statistics Matches: 26, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 26 26 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (26 bp): TTATTTATTTTTATTTTATTTTATTT Left flanking sequence: Indices 944634 -- 945133 AACTATTATTATATATATATATATATGCACCAATGTACTTATATATAAATTTATATATTTTTTTT TATTTATTTACTTGATATTTCTTTCCTTTTATAATATAATTCATATATGTAACGAGATGTTTTAT GGTTTATTTGAAAAATTGGCCATAATATTTCATTTTTCCTTTTTTTAGAAGTATCTTCATTTTCT AAACTTCTCATTTTTTTATTCATTTCTTCTAAAAAGGACTCAACCTTATGCCAACCTTCAGGTGG CTTTCTTGAATTCATAGTTCTTATACGTGGCATTTTGTATATATCACATTAAAAGAAAAAAATAT ATGTTTATTTACTTTAATAATTTCGTTCTTTATTTTTTTTGTTAAAATTAAAAATATTAACCATT CGAATAAGAAAAAAAAAAAAAAAAAAAATGGAACTTTTAATATTTTATATATTCTTAAAGAAATA ATATGAATTACAAAATTTATGATGTAACATTTTTGTTATAGTTCA Right flanking sequence: Indices 945188 -- 945687 TCAACTTTAATTTGGAATAAATTTATAATCTATGAAATATTTTAATATTCACTATTAATTAAAAT ACAATTAAGAAAGAAAAAATATTACATATGTTTTGAACTATATATTCTTATTTTTTATTATATAA AATTTTAAAATAAATGAGTATAAGGTAAAAGCATAAATATATTTTTTTTGTATATATATAAATAA TATATAAATATATATATATTTATTTATTATTATAGAACATATTTAAATACATGGTATTTTATTAT AGGTATGATTTATATTGTGTTAAGCTTATTTTCTTTATATTTTTATATTATTATAGTATTTTCTT CCGAATATATTATTCTTTGTTACCATTTATATATTCTTATAACTTTTATGTTTAAGCACCAAATC CTTATAATTTTTTTGGATCATGTTGAAAATATGTTAAATCATGTAGGATAATTATTTTTAAATAA TCAACTTTTTATTATATTTGTATATGTTGTGATTTTATAAGAGCA Found at