TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739982 P. falciparum 3D7 GENOMIC chr8 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1323195 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Found at i: i:68358 original size:24 final size:24 Alignment explanation
Indices: 68323--68381 Score: 81 Period size: 24 Copynumber: 2.4 Consensus size: 24 68313 GGTTAATTAT 68323 AAAAAATAAAAAAAAAAAAATAAAA 1 AAAAAAT-AAAAAAAAAAAATAAAA ** * 68348 AAAAAATAAAAAATTAGAATAAAA 1 AAAAAATAAAAAAAAAAAATAAAA * 68372 TAAAAATAAA 1 AAAAAATAAA 68382 CATATCATAT Statistics Matches: 30, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 24 23 0.77 25 7 0.23 ACGTcount: A:0.85, C:0.00, G:0.02, T:0.14 Consensus pattern (24 bp): AAAAAATAAAAAAAAAAAATAAAA Left flanking sequence: Indices 67823 -- 68322 AATCAATAAATACGTAAACACAAAAAAGTAATTATTAAGTTTATTAAAACTCAAATAAAAACTTA ACCCTATACCCTAAACCCTAACCCTAATATTAAACCCTAACCCTAACCCTAAACCCTAAACCCTG AACCCTAACCCTAATATTAAACCCTAACCCTAATATTAAACCCTAACCCTAATATTAAACCCTAA CCCTAATATTAAACCCTAACCCTAATATTAAACCCTAACCCTAATATTAAACCCTAACCCTAATA TTAAACCCTAAATATATATATATATATATATTTATTTATGTGGAGGTTAAATATTATAAACGATA TAAGTAGGAAAAGAAATTATACTTGAATTGAAATGTTTGCCTTTTGATTTTTCACAAAAGTATTT TTTAAAATTATTATATTATTTATTTTTAAAAGAGAAAATAAATTTTAATATTATAATTTATTTAT TATGCTATAAAATAAAAATTTTATAGTTTTTAGTTGGTTAATTAT Right flanking sequence: Indices 68382 -- 68881 CATATCATATGTAATAGGAAAAAAAAATTCTTAATAAATCTTATTAAGAGTTATAATAAAATTAT TACTGTTAATATATATATATTCACACATAAAAAAGTAAAAAAAAAAAAAAAAAGTTATAAATTTT CATGTACCAATAGAATATATTATACTCCAAGGTTTATATAAACAAATATATTTCTTCATAGATTT TCATTTATTCAAAAATCTATCCTTCTTCAATATATATCAATATCTATGTCTGCACATATAAATAT GGAAATATATACATTTATTTATTTGTCTTGTCATTATTCCTCCGCAATATCTTCATTTAATCTTC AATATATATTATTAATATAATAATATAGCGCCATTTTTACTTGTATAGCTGCACATATTTATTCA TGTACACACACATTTAATTATAAATTAAGTCTTATTAAAAAAATATTTATTCACGTAACACACAT TTGATTATATATTTAAGTCTTATCAAAAAATATTTATTCATGTAA Found at i:69046 original size:55 final size:53 Alignment explanation
Indices: 68761--69304 Score: 776 Period size: 55 Copynumber: 10.2 Consensus size: 53 68751 ATAGCTGCAC * * 68761 ATATTTATTCATGTACACACACATTTAATTATAAA-TTAAGTCTTATTAAAAAA 1 ATATTTATTCATGTA-ACACACATTTAATTATAAACTTAAGACTTATTAACAAA * * * * * * 68814 ATATTTATTCACGTAACACACATTTGATTATATATTTAAGTCTTATCAA-AAA 1 ATATTTATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA * * * * 68866 ATATTTATTCATGTAACACACATTTGATTATAAATTTAAGTCTTATCAA-AAA 1 ATATTTATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA * * * * * 68918 ATATTTATTCACGTAACACACATTTGATTATAAATTTAAGTCTTATCAA-AAA 1 ATATTTATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA * 68970 ATATTTATTCATGTAACACACATTTAATTATAAACTTACGACTTATTAACAAA 1 ATATTTATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA * * 69023 ATATTCATTTTCATGTAACACACATTTAATTATAAACTTACGACTTATTAACAAA 1 ATATT--TATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA * * 69078 ATATTCATTTTCATGTAACACACATTTAATTATAAACTTACGACTTATTAACAAA 1 ATATT--TATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA * * 69133 ATATTCATTTTCATGTAACACACATTTAATTATAAACTTACGACTTATTAACAAA 1 ATATT--TATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA * * 69188 ATATTCATTTTCATGTAACACACATTTAATTATAAACTTCAGACTTATTAACAAA 1 ATATT--TATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA * * * 69243 ACATTTATTCATGTAACACACATTTAATTATAAACTTACGACATATTAACAAA 1 ATATTTATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA 69296 ATATTTATT 1 ATATTTATT 69305 TAGACAAACA Statistics Matches: 465, Mismatches: 22, Indels: 8 0.94 0.04 0.02 Matches are distributed among these distances: 52 164 0.35 53 87 0.19 55 214 0.46 ACGTcount: A:0.42, C:0.15, G:0.04, T:0.39 Consensus pattern (53 bp): ATATTTATTCATGTAACACACATTTAATTATAAACTTAAGACTTATTAACAAA Left flanking sequence: Indices 68261 -- 68760 TATTATAATTTATTTATTATGCTATAAAATAAAAATTTTATAGTTTTTAGTTGGTTAATTATAAA AAATAAAAAAAAAAAAATAAAAAAAAAATAAAAAATTAGAATAAAATAAAAATAAACATATCATA TGTAATAGGAAAAAAAAATTCTTAATAAATCTTATTAAGAGTTATAATAAAATTATTACTGTTAA TATATATATATTCACACATAAAAAAGTAAAAAAAAAAAAAAAAAGTTATAAATTTTCATGTACCA ATAGAATATATTATACTCCAAGGTTTATATAAACAAATATATTTCTTCATAGATTTTCATTTATT CAAAAATCTATCCTTCTTCAATATATATCAATATCTATGTCTGCACATATAAATATGGAAATATA TACATTTATTTATTTGTCTTGTCATTATTCCTCCGCAATATCTTCATTTAATCTTCAATATATAT TATTAATATAATAATATAGCGCCATTTTTACTTGTATAGCTGCAC Right flanking sequence: Indices 69305 -- 69804 TAGACAAACATATATATATATTTCTTTTAATTTTCAACAGTAAATAAACACAACATAATATAAAA CTATACAATCACTATTTACACTACATTTCACATTAACATACATTATTCAATATATTATATTTTAA TTATTTACTTAAATTAAAATACAATATAATCAAACATAAAACACATCTATTCACCTCTTTACGTT AGGCAAATGATTTTTTTTTGTATATGCAACACTATAACACAAGGATAAATAAAAAGTATAAGAAG AGCATAATTTATGTATATGAAAATGTATATGCATAAATTAAAAATTATTTATACACATATATAAG TTTCTTTTATTTTTTTTTTCATTTTTTTTTCATTTTTTTTTCATTTTTTTTTTTCATTTTTTTTT TTCATTTTTTTTTTCTTTTATTTTTTTCTTTTATTTTTTTCTTTTATTTTTTTCTTTTATTTTTT TTTTTCATTTTTTTTTCATTTTTTTTTTTCATTTTTTTTTTCTTT Found at i:69413 original size:17 final size:19 Alignment explanation
Indices: 69378--69413 Score: 51 Period size: 17 Copynumber: 2.0 Consensus size: 19 69368 AACTATACAA * 69378 TCACTATTTACACTACATT 1 TCACTATTAACACTACATT 69397 TCAC-ATTAACA-TACATT 1 TCACTATTAACACTACATT 69414 ATTCAATATA Statistics Matches: 16, Mismatches: 1, Indels: 2 0.84 0.05 0.11 Matches are distributed among these distances: 17 6 0.38 18 6 0.38 19 4 0.25 ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39 Consensus pattern (19 bp): TCACTATTAACACTACATT Left flanking sequence: Indices 68878 -- 69377 GTAACACACATTTGATTATAAATTTAAGTCTTATCAAAAAATATTTATTCACGTAACACACATTT GATTATAAATTTAAGTCTTATCAAAAAATATTTATTCATGTAACACACATTTAATTATAAACTTA CGACTTATTAACAAAATATTCATTTTCATGTAACACACATTTAATTATAAACTTACGACTTATTA ACAAAATATTCATTTTCATGTAACACACATTTAATTATAAACTTACGACTTATTAACAAAATATT CATTTTCATGTAACACACATTTAATTATAAACTTACGACTTATTAACAAAATATTCATTTTCATG TAACACACATTTAATTATAAACTTCAGACTTATTAACAAAACATTTATTCATGTAACACACATTT AATTATAAACTTACGACATATTAACAAAATATTTATTTAGACAAACATATATATATATTTCTTTT AATTTTCAACAGTAAATAAACACAACATAATATAAAACTATACAA Right flanking sequence: Indices 69414 -- 69913 ATTCAATATATTATATTTTAATTATTTACTTAAATTAAAATACAATATAATCAAACATAAAACAC ATCTATTCACCTCTTTACGTTAGGCAAATGATTTTTTTTTGTATATGCAACACTATAACACAAGG ATAAATAAAAAGTATAAGAAGAGCATAATTTATGTATATGAAAATGTATATGCATAAATTAAAAA TTATTTATACACATATATAAGTTTCTTTTATTTTTTTTTTCATTTTTTTTTCATTTTTTTTTCAT TTTTTTTTTTCATTTTTTTTTTTCATTTTTTTTTTCTTTTATTTTTTTCTTTTATTTTTTTCTTT TATTTTTTTCTTTTATTTTTTTTTTTCATTTTTTTTTCATTTTTTTTTTTCATTTTTTTTTTCTT TAATTTTTTTCTTTAATTTTTTTCTTTAATTTTTTTCTTTTATTTTTTTTTTTCATTTTTTTTTC ATTTTTTTTTCATTTTTTTCTTTAATTTTTTTTTTTCATTTTTTT Found at i:69657 original size:13 final size:13 Alignment explanation
Indices: 69639--70021 Score: 420 Period size: 13 Copynumber: 29.4 Consensus size: 13 69629 GTTTCTTTTA 69639 TTTTTTTTTTCA- 1 TTTTTTTTTTCAT 69651 -TTTTTTTTTCA- 1 TTTTTTTTTTCAT 69662 -TTTTTTTTTCAT 1 TTTTTTTTTTCAT 69674 TTTTTTTTTTCAT 1 TTTTTTTTTTCAT 69687 TTTTTTTTTTCATTT 1 TTTTTTTTTTCA--T * 69702 TTTTTTTCTTTTAT 1 TTTTTTT-TTTCAT * * 69716 TTTTTTCTTTTAT 1 TTTTTTTTTTCAT * * 69729 TTTTTTCTTTTAT 1 TTTTTTTTTTCAT * * 69742 TTTTTTCTTTTAT 1 TTTTTTTTTTCAT 69755 TTTTTTTTTTCA- 1 TTTTTTTTTTCAT 69767 -TTTTTTTTTCAT 1 TTTTTTTTTTCAT 69779 TTTTTTTTTTCATTT 1 TTTTTTTTTTCA--T * 69794 TTTTTTTCTTTAAT 1 TTTTTTT-TTTCAT * * 69808 TTTTTTCTTTAAT 1 TTTTTTTTTTCAT * * 69821 TTTTTTCTTTAAT 1 TTTTTTTTTTCAT * * 69834 TTTTTTCTTTTAT 1 TTTTTTTTTTCAT 69847 TTTTTTTTTTCA- 1 TTTTTTTTTTCAT 69859 -TTTTTTTTTCA- 1 TTTTTTTTTTCAT 69870 -TTTTTTTTTCAT 1 TTTTTTTTTTCAT * * 69882 TTTTTTCTTTAAT 1 TTTTTTTTTTCAT 69895 TTTTTTTTTTCAT 1 TTTTTTTTTTCAT 69908 TTTTTTTTTTCAT 1 TTTTTTTTTTCAT * * 69921 TTTTTTCTTTCCCT 1 TTTTTT-TTTTCAT * 69935 TTTTTCTTTTCAT 1 TTTTTTTTTTCAT 69948 TTTTCCTTTTTTCAT 1 TTTT--TTTTTTCAT * 69963 TTTTTTCTTTTCCT 1 TTTTTT-TTTTCAT * * 69977 TTTTTCTTTTCTT 1 TTTTTTTTTTCAT 69990 TTTTTCATTTTTC-T 1 TTTTT--TTTTTCAT * 70004 TTTTTTTTTTTAT 1 TTTTTTTTTTCAT 70017 TTTTT 1 TTTTT 70022 CATTATTATA Statistics Matches: 328, Mismatches: 24, Indels: 37 0.84 0.06 0.10 Matches are distributed among these distances: 11 55 0.17 12 5 0.02 13 186 0.57 14 41 0.12 15 33 0.10 16 8 0.02 ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82 Consensus pattern (13 bp): TTTTTTTTTTCAT Left flanking sequence: Indices 69139 -- 69638 ATTTTCATGTAACACACATTTAATTATAAACTTACGACTTATTAACAAAATATTCATTTTCATGT AACACACATTTAATTATAAACTTCAGACTTATTAACAAAACATTTATTCATGTAACACACATTTA ATTATAAACTTACGACATATTAACAAAATATTTATTTAGACAAACATATATATATATTTCTTTTA ATTTTCAACAGTAAATAAACACAACATAATATAAAACTATACAATCACTATTTACACTACATTTC ACATTAACATACATTATTCAATATATTATATTTTAATTATTTACTTAAATTAAAATACAATATAA TCAAACATAAAACACATCTATTCACCTCTTTACGTTAGGCAAATGATTTTTTTTTGTATATGCAA CACTATAACACAAGGATAAATAAAAAGTATAAGAAGAGCATAATTTATGTATATGAAAATGTATA TGCATAAATTAAAAATTATTTATACACATATATAAGTTTCTTTTA Right flanking sequence: Indices 70022 -- 70521 CATTATTATAATAACAATTATATAATGTTCTACCTATATTATCTTCATACATGCGGATTATAAAA ATAATCCGGTCTTCGATTATTAAGATAATCCCGTCTTCGATCCTTGAGATAATCCGGTCTTCTTA TAACATAAAGAATGTTATAATCCATATCCAGGTTCTGAAGACTTGAAGATCAAAAGAATTAACTA TATTTATGATAAAATATAGTTAAATTCTTTTGAATAATCTTTAACACCTAAATGTAAAACAAATG GTCTAAGACAAAACGTACATATAATATGTCATATTATATACTTAATAATAAAATATATATATATA TATATATATTGTATATGTATTTATATGTAGAAAATTCAAATAATTAACCACACACAAAAAAAAAA AAAAAAAAAAAAACGCAGTTTATTCCTTTCCAATATTATTGCGAACATGTAAATTAACAAACAAA TAATACATTTACAATTCATTATTATATATATGTTTCCATATAATA Found at i:69794 original size:92 final size:92 Alignment explanation
Indices: 69630--70018 Score: 501 Period size: 92 Copynumber: 4.2 Consensus size: 92 69620 CATATATAAG **** 69630 TTTCTTTTATTTTTTT-TTTCA-TTTTTT-TTTCATTTTTTTTTCATTTTTTTTTTTCATTTTTT 1 TTTCTTTTATTTTTTTCTTTCATTTTTTTCTTTCATTTTTTTTTTTCATTTTTTTTTCATTTTTT * 69692 TTTTTCATTTTTTTTTTCTTTTATTTT 66 TTTTTCATTTTTTTTTTCTTTAATTTT * * 69719 TTTCTTTTATTTTTTTCTTTTATTTTTTTCTTTTATTTTTTTTTTTCATTTTTTTTTCATTTTTT 1 TTTCTTTTATTTTTTTCTTTCATTTTTTTCTTTCATTTTTTTTTTTCATTTTTTTTTCATTTTTT 69784 TTTTTCATTTTTTTTTTCTTTAATTTT 66 TTTTTCATTTTTTTTTTCTTTAATTTT * * * 69811 TTTCTTTAATTTTTTTCTTTAATTTTTTTCTTTTATTTTTTTTTTTCATTTTTTTTTCA--TTTT 1 TTTCTTTTATTTTTTTCTTTCATTTTTTTCTTTCATTTTTTTTTTTCATTTTTTTTTCATTTTTT 69874 TTTTTCA---TTTTTTTCTTTAATTTT 66 TTTTTCATTTTTTTTTTCTTTAATTTT * * * * * 69898 TTTTTTTCATTTTTTTTTTTCATTTTTTTCTTTCCCTTTTTTCTTTTCATTTTTCCTTTTTTCAT 1 TTTCTTTTATTTTTTTCTTTCATTTTTTTCTTT-CATTTTTTTTTTTCA--TTT--TTTTTTCAT * ** 69963 TTTTTTCTTTTCCTTTTTTCTTTTCTTTTTTTCATT 61 TTTTTT-TTTTCATTTTTT-TTTTCTTTAATT--TT * * 69999 TTTCTTTTTTTTTTTTATTT 1 TTTCTTTTATTTTTTTCTTT 70019 TTTCATTATT Statistics Matches: 260, Mismatches: 23, Indels: 22 0.85 0.08 0.07 Matches are distributed among these distances: 87 46 0.18 88 12 0.05 89 16 0.06 90 18 0.07 91 6 0.02 92 121 0.47 94 5 0.02 95 5 0.02 98 3 0.01 99 10 0.04 101 18 0.07 ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82 Consensus pattern (92 bp): TTTCTTTTATTTTTTTCTTTCATTTTTTTCTTTCATTTTTTTTTTTCATTTTTTTTTCATTTTTT TTTTTCATTTTTTTTTTCTTTAATTTT Left flanking sequence: Indices 69130 -- 69629 AAAATATTCATTTTCATGTAACACACATTTAATTATAAACTTACGACTTATTAACAAAATATTCA TTTTCATGTAACACACATTTAATTATAAACTTCAGACTTATTAACAAAACATTTATTCATGTAAC ACACATTTAATTATAAACTTACGACATATTAACAAAATATTTATTTAGACAAACATATATATATA TTTCTTTTAATTTTCAACAGTAAATAAACACAACATAATATAAAACTATACAATCACTATTTACA CTACATTTCACATTAACATACATTATTCAATATATTATATTTTAATTATTTACTTAAATTAAAAT ACAATATAATCAAACATAAAACACATCTATTCACCTCTTTACGTTAGGCAAATGATTTTTTTTTG TATATGCAACACTATAACACAAGGATAAATAAAAAGTATAAGAAGAGCATAATTTATGTATATGA AAATGTATATGCATAAATTAAAAATTATTTATACACATATATAAG Right flanking sequence: Indices 70019 -- 70518 TTTCATTATTATAATAACAATTATATAATGTTCTACCTATATTATCTTCATACATGCGGATTATA AAAATAATCCGGTCTTCGATTATTAAGATAATCCCGTCTTCGATCCTTGAGATAATCCGGTCTTC TTATAACATAAAGAATGTTATAATCCATATCCAGGTTCTGAAGACTTGAAGATCAAAAGAATTAA CTATATTTATGATAAAATATAGTTAAATTCTTTTGAATAATCTTTAACACCTAAATGTAAAACAA ATGGTCTAAGACAAAACGTACATATAATATGTCATATTATATACTTAATAATAAAATATATATAT ATATATATATATTGTATATGTATTTATATGTAGAAAATTCAAATAATTAACCACACACAAAAAAA AAAAAAAAAAAAAAAACGCAGTTTATTCCTTTCCAATATTATTGCGAACATGTAAATTAACAAAC AAATAATACATTTACAATTCATTATTATATATATGTTTCCATATA Found at i:70104 original size:24 final size:24 Alignment explanation
Indices: 70077--70148 Score: 102 Period size: 24 Copynumber: 3.0 Consensus size: 24 70067 CATACATGCG * * 70077 GATTATAAAAATAATCCGGTCTTC 1 GATTATTAAGATAATCCGGTCTTC * 70101 GATTATTAAGATAATCCCGTCTTC 1 GATTATTAAGATAATCCGGTCTTC ** * 70125 GATCCTTGAGATAATCCGGTCTTC 1 GATTATTAAGATAATCCGGTCTTC 70149 TTATAACATA Statistics Matches: 41, Mismatches: 7, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 24 41 1.00 ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35 Consensus pattern (24 bp): GATTATTAAGATAATCCGGTCTTC Left flanking sequence: Indices 69577 -- 70076 GTATATGAAAATGTATATGCATAAATTAAAAATTATTTATACACATATATAAGTTTCTTTTATTT TTTTTTTCATTTTTTTTTCATTTTTTTTTCATTTTTTTTTTTCATTTTTTTTTTTCATTTTTTTT TTCTTTTATTTTTTTCTTTTATTTTTTTCTTTTATTTTTTTCTTTTATTTTTTTTTTTCATTTTT TTTTCATTTTTTTTTTTCATTTTTTTTTTCTTTAATTTTTTTCTTTAATTTTTTTCTTTAATTTT TTTCTTTTATTTTTTTTTTTCATTTTTTTTTCATTTTTTTTTCATTTTTTTCTTTAATTTTTTTT TTTCATTTTTTTTTTTCATTTTTTTCTTTCCCTTTTTTCTTTTCATTTTTCCTTTTTTCATTTTT TTCTTTTCCTTTTTTCTTTTCTTTTTTTCATTTTTCTTTTTTTTTTTTATTTTTTCATTATTATA ATAACAATTATATAATGTTCTACCTATATTATCTTCATACATGCG Right flanking sequence: Indices 70149 -- 70648 TTATAACATAAAGAATGTTATAATCCATATCCAGGTTCTGAAGACTTGAAGATCAAAAGAATTAA CTATATTTATGATAAAATATAGTTAAATTCTTTTGAATAATCTTTAACACCTAAATGTAAAACAA ATGGTCTAAGACAAAACGTACATATAATATGTCATATTATATACTTAATAATAAAATATATATAT ATATATATATATTGTATATGTATTTATATGTAGAAAATTCAAATAATTAACCACACACAAAAAAA AAAAAAAAAAAAAAAACGCAGTTTATTCCTTTCCAATATTATTGCGAACATGTAAATTAACAAAC AAATAATACATTTACAATTCATTATTATATATATGTTTCCATATAATAAAACCCAAATAAATTAT AATTAAAATTACAACTTATTCCCTACCCATAGAAGGACATATTTCTAAAGTACCAACTGATTAAA AACGTACTTTAGAATTTTTAAATACTTTTCTGTATTTTCCTAAGT Found at i:72865 original size:16 final size:15 Alignment explanation
Indices: 72840--72874 Score: 47 Period size: 16 Copynumber: 2.3 Consensus size: 15 72830 TATGATAAAA * 72840 ATAAAAACTAGCTTTT 1 ATATAAACTAG-TTTT * 72856 TTATAAACTAGTTTT 1 ATATAAACTAGTTTT 72871 ATAT 1 ATAT 72875 TTACCATACG Statistics Matches: 16, Mismatches: 3, Indels: 1 0.80 0.15 0.05 Matches are distributed among these distances: 15 7 0.44 16 9 0.56 ACGTcount: A:0.40, C:0.09, G:0.06, T:0.46 Consensus pattern (15 bp): ATATAAACTAGTTTT Left flanking sequence: Indices 72340 -- 72839 TTGTAAGGACAATGAATAAATCAACCTTAAAAGTGCATCCTAGATTTATTAAAAAAAAAACAAGA ACAAATTTTATATTGTCCATTTTATTTCATAAACTAGATATATTTATATCCTTTTATATAAATAT ATGTATGCACCCCACCTTTATAGCCTCGTCAATGGCCTCTATAAGGATTTCTATAATTATTAAAA ATAATTATATCGTTTCTATTTGCCGACCAACCGCCTCTTGTACTGAATTTTTATTAATCACCTCT ATAATAATATATATACAACATGCTATAAAAATAGCCACATCATATATATACATTTATGTATTGAT TAATTAAGAAGTAACCCCAAGGTATACATAAAAAATATTTTGAGGGTATTTTGACCAAGACAGGA ACAGATCAAAATATTTTCATTACACCTCTACCTTTGAAGGCTCGTAAGACTCTCACAAAGGGTTT TAATAAAACATACGACTATTTAAAATTAATTATCATATGATAAAA Right flanking sequence: Indices 72875 -- 73374 TTACCATACGATAATTAAATAAGAGATAGCTCAACCTAATATTTCTTAAAAAATAAAAGATCTTT ATATATTCATCCTCTTGAACAGTAAAAATTAAACCGAACAATTAAAATATATTTACTTCCCCACC TTTAAAGGCGCGCAAAACCTTTACAAGGATTTCTTAAATAAGGGTACACCTGTTTATTCGTCCAA CCTAAACATTAAAATACGACCTTTTTGAGACATAAATTCCATAATAGTAAATGCACATTACAATA TATAAACTATAAATGCACATTACAATATATAAACTATAAATGCACACTTACTACTATGAAATTTA TTTAGAGACAGCTCAACCTAATATTTCTTACGAAATAAAAGATCTTTATATATTCATCCTCTTGA ACAGTAAAAATTAAACCGAACAATTAAAATATATTTACTTCCCCACCTTTAATGGCGCGCAAAAC CTCTACAAGGATTTTTAAAATAAGGGGTACTTTGTTTATCCATCC Found at i:73147 original size:27 final size:27 Alignment explanation
Indices: 73117--73185 Score: 129 Period size: 27 Copynumber: 2.5 Consensus size: 27 73107 TCCATAATAG 73117 TAAATGCACATTACAATATATAAACTA 1 TAAATGCACATTACAATATATAAACTA 73144 TAAATGCACATTACAATATATAAACTA 1 TAAATGCACATTACAATATATAAACTA 73171 TAAATGCACACTTAC 1 TAAATGCACA-TTAC 73186 TACTATGAAA Statistics Matches: 41, Mismatches: 0, Indels: 1 0.98 0.00 0.02 Matches are distributed among these distances: 27 37 0.90 28 4 0.10 ACGTcount: A:0.49, C:0.17, G:0.04, T:0.29 Consensus pattern (27 bp): TAAATGCACATTACAATATATAAACTA Left flanking sequence: Indices 72617 -- 73116 ACATGCTATAAAAATAGCCACATCATATATATACATTTATGTATTGATTAATTAAGAAGTAACCC CAAGGTATACATAAAAAATATTTTGAGGGTATTTTGACCAAGACAGGAACAGATCAAAATATTTT CATTACACCTCTACCTTTGAAGGCTCGTAAGACTCTCACAAAGGGTTTTAATAAAACATACGACT ATTTAAAATTAATTATCATATGATAAAAATAAAAACTAGCTTTTTTATAAACTAGTTTTATATTT ACCATACGATAATTAAATAAGAGATAGCTCAACCTAATATTTCTTAAAAAATAAAAGATCTTTAT ATATTCATCCTCTTGAACAGTAAAAATTAAACCGAACAATTAAAATATATTTACTTCCCCACCTT TAAAGGCGCGCAAAACCTTTACAAGGATTTCTTAAATAAGGGTACACCTGTTTATTCGTCCAACC TAAACATTAAAATACGACCTTTTTGAGACATAAATTCCATAATAG Right flanking sequence: Indices 73186 -- 73685 TACTATGAAATTTATTTAGAGACAGCTCAACCTAATATTTCTTACGAAATAAAAGATCTTTATAT ATTCATCCTCTTGAACAGTAAAAATTAAACCGAACAATTAAAATATATTTACTTCCCCACCTTTA ATGGCGCGCAAAACCTCTACAAGGATTTTTAAAATAAGGGGTACTTTGTTTATCCATCCATCCTA AGCATCCAGATACGACGACTTTTCACATACAAATTTCATAATAGTAAATGTGTACTACAAAATAA ACTATAGTATACACACTTACTACTATGAAATCTATTCAGAGATAGCTCAACCTAATATTTCTTAT GAAATAAAAGATCTTTATATATCTTCATCCTATTGAACAGTAAAAAATAAACCGAACAATTAAAA TATATTTGCCTCCCCACCTTTAAAGGCGCGTAAAACCTTTACAAGGCTTTTAAACAAAAGGGTAC ACATGTGTAACCCTGCATTCTAAACATACACATACGACTTTTCAC Found at i:74573 original size:13 final size:13 Alignment explanation
Indices: 74551--74583 Score: 45 Period size: 13 Copynumber: 2.5 Consensus size: 13 74541 TAAATATTAA * 74551 AAAATTAAAAAAG 1 AAAATAAAAAAAG ** 74564 AAAATAAAAATTG 1 AAAATAAAAAAAG 74577 AAAATAA 1 AAAATAA 74584 TTTTTTTTTT Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 13 17 1.00 ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18 Consensus pattern (13 bp): AAAATAAAAAAAG Left flanking sequence: Indices 74051 -- 74550 TACACAATATATACATATTAACTAAATATTATATAATTGTGTAATATATTTAATTACTATAAGAA CAATATATATATATATATATATATATATATATATATATTTGCACAATTGTCTTTCCTATACAATT ATCAGTAATCATCAACACTTCTTTGTTACATTTATTACACAGAATAAAAGAGGGGTGAGGGGTGT ACATATTTATTTAATGGAATTTCCATTATAAATTTAACATTTAGCTGTATAAACGTTAATTTATT ATATAAAACATCCAGATTTTATTTTTTATGGATAAAAACCTTAGACTATACATATATTTCACATA TACTGTATATCTCTCCATACTCAACTTTTATATAATTCTTTCTACAATATTATATATATGTTGAT TTATTTATTTCATAAACATTTTCTTTCTTATCAAACAATCTAAAAGAACAGAAACTTTTAATGAA AAAGGAAAATTTCATGAACAAAAGAGTGAATTATTTAAATATTAA Right flanking sequence: Indices 74584 -- 75083 TTTTTTTTTTTTTTTTTTTTTTATATATATTATAATACTTCATAGAAACACATTAACTGGATTCA TTTGTGATATCCTTTCTCTTTCTTCATGAGACGTTGCACAGCACCATTTGCATTTGTTTATTTTA AAATTAATTATATCATTTTCTAATTAAATATCTTTCAGAACATTTACTTCGCATGAAAACATATT TTTAAAATATGCCCATGCTAAGATATACGCACGAAAAACTGATGGCGTCATATATTATAATAGTA CATAAATAATTGATGCCTATATAATATATATATATATATATATATATATACACTTATCTACAAGA AAATAAAAAAATTAAAAGCACATATATATACAATAACATAAAAATAAAATTTTACATAAATAAAA TTTTGTATTTAATAAGAATACATATGTATTCCTCAAAAATAAAGTATAAAAATAACAAAAATATT TAATAAACCATATATATAATATAAATGATACAAAAACGTGCAACA Found at i:75203 original size:55 final size:57 Alignment explanation
Indices: 75117--75226 Score: 143 Period size: 55 Copynumber: 2.0 Consensus size: 57 75107 TATATATATA * * 75117 TATATATATATATATAATTCTTTTTATATTTTATATATCTTGCTCTTCTTTATTTAT 1 TATATATATATACATAATTCTTTATATATTTTATATATCTTGCTCTTCTTTATTTAT * * * * * * * 75174 TATATATATATTCATAATT-TTTAT-TATTTTATTTTTTTTTCTTTTCTTTTTTT 1 TATATATATATACATAATTCTTTATATATTTTATATATCTTGCTCTTCTTTATTT 75227 TTTTGTGTGT Statistics Matches: 44, Mismatches: 9, Indels: 2 0.80 0.16 0.04 Matches are distributed among these distances: 55 23 0.52 56 4 0.09 57 17 0.39 ACGTcount: A:0.25, C:0.07, G:0.01, T:0.67 Consensus pattern (57 bp): TATATATATATACATAATTCTTTATATATTTTATATATCTTGCTCTTCTTTATTTAT Left flanking sequence: Indices 74617 -- 75116 AATACTTCATAGAAACACATTAACTGGATTCATTTGTGATATCCTTTCTCTTTCTTCATGAGACG TTGCACAGCACCATTTGCATTTGTTTATTTTAAAATTAATTATATCATTTTCTAATTAAATATCT TTCAGAACATTTACTTCGCATGAAAACATATTTTTAAAATATGCCCATGCTAAGATATACGCACG AAAAACTGATGGCGTCATATATTATAATAGTACATAAATAATTGATGCCTATATAATATATATAT ATATATATATATATATACACTTATCTACAAGAAAATAAAAAAATTAAAAGCACATATATATACAA TAACATAAAAATAAAATTTTACATAAATAAAATTTTGTATTTAATAAGAATACATATGTATTCCT CAAAAATAAAGTATAAAAATAACAAAAATATTTAATAAACCATATATATAATATAAATGATACAA AAACGTGCAACAAAATAAATAAATAAATAAATATATATATATATA Right flanking sequence: Indices 75227 -- 75726 TTTTGTGTGTTTGTGTATCATATTATATAATGTAAAACATTTTTTCATTTTTTTAAAGAACTTAA TAAAAATCATAAAGTGTATAATTTTAAACATAACAATATTTAAAATTTAATATAAGCTTATCTTA ATTTATATACATTGAAATTGTAGAGTACCTTCCATAAGTAAGCCTTTTAAAAAATATCCTAATTT AAATGTGCTACAAAATATAATTCATATATAAACTACTAAAATAACTACATCCAACGTTTAATTAT AACAACTTAATAATATGCATAATACATTAACTTTAATAAAAAAAATTATATACACTAATTATAAT TTATTTGAGTCCAAAAAAAAAAAAAAAAAAGAAATTAATCTATAATCACAATTCTGTAAATATTA ACATTTAATTATATTTGCACAAAATCTTCACTTTTAAAAAATAAAATGTTTAAATACATCCTCAA TTCATATATATAACTCATTTCCATATTCATAAAATATTACTACTT Found at i:75218 original size:15 final size:15 Alignment explanation
Indices: 75191--75228 Score: 55 Period size: 15 Copynumber: 2.5 Consensus size: 15 75181 ATATTCATAA * 75191 TTTTTATTATTTTAT 1 TTTTTTTTATTTTAT * * 75206 TTTTTTTTCTTTTCT 1 TTTTTTTTATTTTAT 75221 TTTTTTTT 1 TTTTTTTT 75229 TTGTGTGTTT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 15 20 1.00 ACGTcount: A:0.08, C:0.05, G:0.00, T:0.87 Consensus pattern (15 bp): TTTTTTTTATTTTAT Left flanking sequence: Indices 74691 -- 75190 ACCATTTGCATTTGTTTATTTTAAAATTAATTATATCATTTTCTAATTAAATATCTTTCAGAACA TTTACTTCGCATGAAAACATATTTTTAAAATATGCCCATGCTAAGATATACGCACGAAAAACTGA TGGCGTCATATATTATAATAGTACATAAATAATTGATGCCTATATAATATATATATATATATATA TATATATACACTTATCTACAAGAAAATAAAAAAATTAAAAGCACATATATATACAATAACATAAA AATAAAATTTTACATAAATAAAATTTTGTATTTAATAAGAATACATATGTATTCCTCAAAAATAA AGTATAAAAATAACAAAAATATTTAATAAACCATATATATAATATAAATGATACAAAAACGTGCA ACAAAATAAATAAATAAATAAATATATATATATATATATATATATATATATAATTCTTTTTATAT TTTATATATCTTGCTCTTCTTTATTTATTATATATATATTCATAA Right flanking sequence: Indices 75229 -- 75728 TTGTGTGTTTGTGTATCATATTATATAATGTAAAACATTTTTTCATTTTTTTAAAGAACTTAATA AAAATCATAAAGTGTATAATTTTAAACATAACAATATTTAAAATTTAATATAAGCTTATCTTAAT TTATATACATTGAAATTGTAGAGTACCTTCCATAAGTAAGCCTTTTAAAAAATATCCTAATTTAA ATGTGCTACAAAATATAATTCATATATAAACTACTAAAATAACTACATCCAACGTTTAATTATAA CAACTTAATAATATGCATAATACATTAACTTTAATAAAAAAAATTATATACACTAATTATAATTT ATTTGAGTCCAAAAAAAAAAAAAAAAAAGAAATTAATCTATAATCACAATTCTGTAAATATTAAC ATTTAATTATATTTGCACAAAATCTTCACTTTTAAAAAATAAAATGTTTAAATACATCCTCAATT CATATATATAACTCATTTCCATATTCATAAAATATTACTACTTTT Found at i:76444 original size:14 final size:14 Alignment explanation
Indices: 76422--76471 Score: 49 Period size: 14 Copynumber: 3.5 Consensus size: 14 76412 TGAATTTAAA * * 76422 ATATTTAATTCCAT 1 ATATATAATTACAT * * 76436 ATTTATAATTATAT 1 ATATATAATTACAT * * 76450 ATATATATATAATAT 1 ATATATA-ATTACAT 76465 ATATATA 1 ATATATA 76472 TATTTTTTTT Statistics Matches: 29, Mismatches: 6, Indels: 1 0.81 0.17 0.03 Matches are distributed among these distances: 14 16 0.55 15 13 0.45 ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50 Consensus pattern (14 bp): ATATATAATTACAT Left flanking sequence: Indices 75922 -- 76421 ATGTATATATGTATATATTCAACTTATAGTTTTAAAATTTATCATGGCCTTATCTATATCAAAGG GACCATAAAATCTTTTTCTATGTACTACAATATTACATCAAACATAGAAAGCATAGACTTTTCTT TATAAAGAACTTTTTCATATTTTAAAAAATAAAATTAAACATTTGCAAGATTCTTTAAAAGATTT ATCTATTAATTTAAGTACTTTATCATAATAAATGAAGAAAACATAATGAAAATATGTTACTCACT TAGCATACATATATCTTATTACTTTCAAAATATAGGATATTTGAATATCCTCATATTATCTTCAT TTTCCATACACAAAATAGCTAGCCAGCTAGCCAAAATCAATAATAATAAAAAAATATAATATTAT ACATACATATATATATATATATATATATATATATAAATATACATATGTGATTATCAATTTAATTT TATATGTATTTATAAGAAATAAGTTTTGGAAAAAATGAATTTAAA Right flanking sequence: Indices 76472 -- 76971 TATTTTTTTTTTTTTTTCATTATTTTTTAATTATACAAATATATAAACTATAACATATTTATGCT TAAATTTTATACTTTCTATTTTGTATTATTTTATTCTTTAATTTTTTAATGTAAATATACTTTGA ACATATTTTATTTTATATAAAACATAATATTTCAAAAATAAATAATTAAGCCCATCACAATTTTG CGTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAACAAATAAATGTGTAAATAAGTGAATT CTGAACTACTTGACCACATTGTATAAAAATAAATAAAATACACAAAAACGAATAAGGTATTTTCG TAAAAATTATAATATATTTTTTCATGTCATAATTAAAAAAAAAAAACAATAAAAATTATTTATTT AAATTATTTGCTATTAGTTCCTATTTCGTCAAATATATGAAAATATTACATTCTAAAAATTTAGG AACTTCATATATATATAATATATATATATATATATATATATAAAT Found at i:76466 original size:13 final size:13 Alignment explanation
Indices: 76448--76473 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 76438 TTATAATTAT 76448 ATATATATATATA 1 ATATATATATATA 76461 ATATATATATATA 1 ATATATATATATA 76474 TTTTTTTTTT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (13 bp): ATATATATATATA Left flanking sequence: Indices 75948 -- 76447 TAGTTTTAAAATTTATCATGGCCTTATCTATATCAAAGGGACCATAAAATCTTTTTCTATGTACT ACAATATTACATCAAACATAGAAAGCATAGACTTTTCTTTATAAAGAACTTTTTCATATTTTAAA AAATAAAATTAAACATTTGCAAGATTCTTTAAAAGATTTATCTATTAATTTAAGTACTTTATCAT AATAAATGAAGAAAACATAATGAAAATATGTTACTCACTTAGCATACATATATCTTATTACTTTC AAAATATAGGATATTTGAATATCCTCATATTATCTTCATTTTCCATACACAAAATAGCTAGCCAG CTAGCCAAAATCAATAATAATAAAAAAATATAATATTATACATACATATATATATATATATATAT ATATATATAAATATACATATGTGATTATCAATTTAATTTTATATGTATTTATAAGAAATAAGTTT TGGAAAAAATGAATTTAAAATATTTAATTCCATATTTATAATTAT Right flanking sequence: Indices 76474 -- 76973 TTTTTTTTTTTTTTTCATTATTTTTTAATTATACAAATATATAAACTATAACATATTTATGCTTA AATTTTATACTTTCTATTTTGTATTATTTTATTCTTTAATTTTTTAATGTAAATATACTTTGAAC ATATTTTATTTTATATAAAACATAATATTTCAAAAATAAATAATTAAGCCCATCACAATTTTGCG TTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAACAAATAAATGTGTAAATAAGTGAATTCT GAACTACTTGACCACATTGTATAAAAATAAATAAAATACACAAAAACGAATAAGGTATTTTCGTA AAAATTATAATATATTTTTTCATGTCATAATTAAAAAAAAAAAACAATAAAAATTATTTATTTAA ATTATTTGCTATTAGTTCCTATTTCGTCAAATATATGAAAATATTACATTCTAAAAATTTAGGAA CTTCATATATATATAATATATATATATATATATATATATAAATAT Found at i:77403 original size:13 final size:13 Alignment explanation
Indices: 77319--77402 Score: 103 Period size: 13 Copynumber: 6.5 Consensus size: 13 77309 AAAATAAAGG * 77319 AAAAAAATTAGGA 1 AAAAAAAATAGGA * 77332 AAAAAAATTA-GA 1 AAAAAAAATAGGA * * 77344 AAAAAAAATGGTA 1 AAAAAAAATAGGA 77357 AAAAAAAATAGGAA 1 AAAAAAAATAGG-A * 77371 AAAAAAAATAAG- 1 AAAAAAAATAGGA * 77383 AAAAAAACTAGGA 1 AAAAAAAATAGGA 77396 AAAAAAA 1 AAAAAAA 77403 CGTGTTTTCT Statistics Matches: 60, Mismatches: 8, Indels: 6 0.81 0.11 0.08 Matches are distributed among these distances: 12 20 0.33 13 28 0.47 14 12 0.20 ACGTcount: A:0.76, C:0.01, G:0.12, T:0.11 Consensus pattern (13 bp): AAAAAAAATAGGA Left flanking sequence: Indices 76819 -- 77318 CATGTCATAATTAAAAAAAAAAAACAATAAAAATTATTTATTTAAATTATTTGCTATTAGTTCCT ATTTCGTCAAATATATGAAAATATTACATTCTAAAAATTTAGGAACTTCATATATATATAATATA TATATATATATATATATATAAATATTCGACAATTAACGAAAATATTAACATATGCACATTGTATT TATAAAGATACTTATGTGTAAATATATATATATATATTGCTAATCATATATTTTTTATAATAATC TTTTAAATAAATAATGATGAGTTGATATTCATTGTAAGTTTCTTTAAAAAAAAAAAAAAATTATT TTAACTTGTATGCAAAATTGTGAAACGAACAGAAAAATGTATTGTTAATATACAAAATATCAATT CAAATAAAATTAGTATGAATAATCAACAGTTCGTCTAATATTAAGATGTGAAACAAGGAAATGTA ATAAATCAAAACTTGAATAAAATCGAAAAAAAATGAAAATAAAGG Right flanking sequence: Indices 77403 -- 77902 CGTGTTTTCTTATTTGTGTAAAACATTATGTACTTGAACACAAAATGATAATAATTATATGAAAC ATATATATATTTATGTATTTATTTATTTATTTATTTATTATTTGTTTATCTTTTATTTACTTTTA AATCTTTCTTTCTTTTTTTTTTTTTTTTTCCTGTGTGTACTTTACTTTTCATAAATATGACTTAC TACTAATGGAATATAATAAGGTTATATATACTAAAATTTTATAACAAAAGAATTAAATCATCTAA GAAATACAGCTAGTCTTTCGACATTAAAGCGAATATAAGGAAGCATTCTATATAATTCCCGTTCT TCTTGCCATGTTAAATTTAAATTTCGATCTTTAATATTTTGTTTTAAATATTTTTTAAATGTTGC CTCACTAGGAACAGCATCATCTAGTTTTACTCCTCTTTGAAAAGCCAACTTTACATCTGTATTTC CTTGATTCACTGTTTCAAGAACAACATCATAAAGTGTATCATTTA Found at i:78135 original size:11 final size:11 Alignment explanation
Indices: 78121--78144 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 78111 AAATAAATTC 78121 AAAACAAACAA 1 AAAACAAACAA ** 78132 AAAATTAACAA 1 AAAACAAACAA 78143 AA 1 AA 78145 GCGAAAAAAA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.79, C:0.12, G:0.00, T:0.08 Consensus pattern (11 bp): AAAACAAACAA Left flanking sequence: Indices 77621 -- 78120 ATATATACTAAAATTTTATAACAAAAGAATTAAATCATCTAAGAAATACAGCTAGTCTTTCGACA TTAAAGCGAATATAAGGAAGCATTCTATATAATTCCCGTTCTTCTTGCCATGTTAAATTTAAATT TCGATCTTTAATATTTTGTTTTAAATATTTTTTAAATGTTGCCTCACTAGGAACAGCATCATCTA GTTTTACTCCTCTTTGAAAAGCCAACTTTACATCTGTATTTCCTTGATTCACTGTTTCAAGAACA ACATCATAAAGTGTATCATTTATTTCTGAATTATGCCATATGGAACTTTTTCTTCCTTTAGTCAT ATAAATACCTCCTATAAGTGTTATTAATGCTAAGGCTCCTATAGCTGCTCCTGATATAAGAGCAA ATTTCTTTTTTTTATCATATTTCTCTAATTTTAAATTTACTAAACTTAATTTATCCTTAACCCAT TCCTTCCCATAATCCTTTTTACACGTACAAGGGGAAAATAAATTC Right flanking sequence: Indices 78145 -- 78644 GCGAAAAAAATAAAAACTTTCATTTTAAAAAAATAATAAAAATAAATAAAATAAATAATAATAAT AAAATATATATATATATATATAATATTATGATACATATATATATTTATGTATTGATAATATTCAT ATATCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATCTATAAAAAT TGTAAATTAATAAATAAATAAATATATATATATATATATATATATATATTTTTTTTTTTATGATT AATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATATATACAAAC ACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTTATAAACTTA TTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTG GCCAAATTTATAATAATATATAACTATTTTTATTTATAAAAAAAA Found at i:78203 original size:22 final size:21 Alignment explanation
Indices: 78170--78212 Score: 70 Period size: 22 Copynumber: 2.0 Consensus size: 21 78160 ACTTTCATTT 78170 TAAAAAAATAATAAAAATAAA 1 TAAAAAAATAATAAAAATAAA * 78191 TAAAATAAATAATAATAATAAA 1 TAAAA-AAATAATAAAAATAAA 78213 ATATATATAT Statistics Matches: 20, Mismatches: 1, Indels: 1 0.91 0.05 0.05 Matches are distributed among these distances: 21 5 0.25 22 15 0.75 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (21 bp): TAAAAAAATAATAAAAATAAA Left flanking sequence: Indices 77670 -- 78169 AGCTAGTCTTTCGACATTAAAGCGAATATAAGGAAGCATTCTATATAATTCCCGTTCTTCTTGCC ATGTTAAATTTAAATTTCGATCTTTAATATTTTGTTTTAAATATTTTTTAAATGTTGCCTCACTA GGAACAGCATCATCTAGTTTTACTCCTCTTTGAAAAGCCAACTTTACATCTGTATTTCCTTGATT CACTGTTTCAAGAACAACATCATAAAGTGTATCATTTATTTCTGAATTATGCCATATGGAACTTT TTCTTCCTTTAGTCATATAAATACCTCCTATAAGTGTTATTAATGCTAAGGCTCCTATAGCTGCT CCTGATATAAGAGCAAATTTCTTTTTTTTATCATATTTCTCTAATTTTAAATTTACTAAACTTAA TTTATCCTTAACCCATTCCTTCCCATAATCCTTTTTACACGTACAAGGGGAAAATAAATTCAAAA CAAACAAAAAATTAACAAAAGCGAAAAAAATAAAAACTTTCATTT Right flanking sequence: Indices 78213 -- 78712 ATATATATATATATATATAATATTATGATACATATATATATTTATGTATTGATAATATTCATATA TCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATCTATAAAAATTGT AAATTAATAAATAAATAAATATATATATATATATATATATATATATTTTTTTTTTTATGATTAAT TTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATATATACAAACACA CAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTTATAAACTTATTT ATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGCC AAATTTATAATAATATATAACTATTTTTATTTATAAAAAAAAAAAAAAAAATTATGAAATGTGGA CAGATTTATATTAATATATGATTATTCTTATTTATAAAACCGATA Found at i:78247 original size:21 final size:19 Alignment explanation
Indices: 78208--78252 Score: 58 Period size: 21 Copynumber: 2.3 Consensus size: 19 78198 AATAATAATA * * 78208 ATAAAATATATATATATAT 1 ATATAATATATATACATAT 78227 ATATAATATTATGATACATAT 1 ATATAATA-TAT-ATACATAT 78248 ATATA 1 ATATA 78253 TTTATGTATT Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 19 7 0.32 20 3 0.14 21 12 0.55 ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42 Consensus pattern (19 bp): ATATAATATATATACATAT Left flanking sequence: Indices 77708 -- 78207 TTCTATATAATTCCCGTTCTTCTTGCCATGTTAAATTTAAATTTCGATCTTTAATATTTTGTTTT AAATATTTTTTAAATGTTGCCTCACTAGGAACAGCATCATCTAGTTTTACTCCTCTTTGAAAAGC CAACTTTACATCTGTATTTCCTTGATTCACTGTTTCAAGAACAACATCATAAAGTGTATCATTTA TTTCTGAATTATGCCATATGGAACTTTTTCTTCCTTTAGTCATATAAATACCTCCTATAAGTGTT ATTAATGCTAAGGCTCCTATAGCTGCTCCTGATATAAGAGCAAATTTCTTTTTTTTATCATATTT CTCTAATTTTAAATTTACTAAACTTAATTTATCCTTAACCCATTCCTTCCCATAATCCTTTTTAC ACGTACAAGGGGAAAATAAATTCAAAACAAACAAAAAATTAACAAAAGCGAAAAAAATAAAAACT TTCATTTTAAAAAAATAATAAAAATAAATAAAATAAATAATAATA Right flanking sequence: Indices 78253 -- 78752 TTTATGTATTGATAATATTCATATATCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGA GATGAAAGGAATCTATAAAAATTGTAAATTAATAAATAAATAAATATATATATATATATATATAT ATATATTTTTTTTTTTATGATTAATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATA TATATATAATATATATACAAACACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCC ACATTTTGTATTTATAAACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTATAAAAAA AAAAAAAAAAATTATGAAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTATAAAAC CGATAAAAAAAAAAAAAAAAAAAAAATTAAAGGATAACAATTATT Found at i:78363 original size:12 final size:12 Alignment explanation
Indices: 78342--78388 Score: 52 Period size: 12 Copynumber: 3.9 Consensus size: 12 78332 ATAAAAATTG * * 78342 TAAATTAATAAA 1 TAAATAAATATA 78354 TAAATAAATATA 1 TAAATAAATATA * * 78366 TATATATATATA 1 TAAATAAATATA * * 78378 TATATATATAT 1 TAAATAAATAT 78389 TTTTTTTTTT Statistics Matches: 31, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 12 31 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (12 bp): TAAATAAATATA Left flanking sequence: Indices 77842 -- 78341 TTTACATCTGTATTTCCTTGATTCACTGTTTCAAGAACAACATCATAAAGTGTATCATTTATTTC TGAATTATGCCATATGGAACTTTTTCTTCCTTTAGTCATATAAATACCTCCTATAAGTGTTATTA ATGCTAAGGCTCCTATAGCTGCTCCTGATATAAGAGCAAATTTCTTTTTTTTATCATATTTCTCT AATTTTAAATTTACTAAACTTAATTTATCCTTAACCCATTCCTTCCCATAATCCTTTTTACACGT ACAAGGGGAAAATAAATTCAAAACAAACAAAAAATTAACAAAAGCGAAAAAAATAAAAACTTTCA TTTTAAAAAAATAATAAAAATAAATAAAATAAATAATAATAATAAAATATATATATATATATATA ATATTATGATACATATATATATTTATGTATTGATAATATTCATATATCTATGGATGAAAAAAAAA AAAAAAAATTATATTAAATGAGATGAAAGGAATCTATAAAAATTG Right flanking sequence: Indices 78389 -- 78888 TTTTTTTTTTATGATTAATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATA TAATATATATACAAACACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTT TGTATTTATAAACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTATAAAAAAAAAAAA AAAAATTATGAAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTATAAAACCGATAA AAAAAAAAAAAAAAAAAAAATTAAAGGATAACAATTATTTATGTGGCTTTAACAAAAAAAAAAAA ATAAAATAAAATAATAAATAAATAAAATAATAATAAATATACATACACTAGTAATTATGCTTATT TCATTACTTTAAATAAAAGGCATATACTAAATAATATTAAATATT Found at i:78645 original size:66 final size:66 Alignment explanation
Indices: 78571--78731 Score: 216 Period size: 66 Copynumber: 2.4 Consensus size: 66 78561 GAAAAAAAAA * * 78571 AAAAAAAAAAAAAAAAAAAAAAAAATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTA 1 AAAAAAAAAAAAAAAAAAAAAAAAATGTGGACAAATTTATAATAATATATAACTATTCTTATTTA 78636 T 66 T ** ** * * * * 78637 AAAAAAAAAAAAAAAAATTATGAAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTA 1 AAAAAAAAAAAAAAAAAAAAAAAAATGTGGACAAATTTATAATAATATATAACTATTCTTATTTA 78702 T 66 T 78703 AAAACCGATAAAAAAAAAAAAAAAAAAAA 1 AAAA---A-AAAAAAAAAAAAAAAAAAAA 78732 AATTAAAGGA Statistics Matches: 77, Mismatches: 14, Indels: 4 0.81 0.15 0.04 Matches are distributed among these distances: 66 60 0.78 69 1 0.01 70 16 0.21 ACGTcount: A:0.61, C:0.04, G:0.06, T:0.28 Consensus pattern (66 bp): AAAAAAAAAAAAAAAAAAAAAAAAATGTGGACAAATTTATAATAATATATAACTATTCTTATTTA T Left flanking sequence: Indices 78071 -- 78570 CCCATTCCTTCCCATAATCCTTTTTACACGTACAAGGGGAAAATAAATTCAAAACAAACAAAAAA TTAACAAAAGCGAAAAAAATAAAAACTTTCATTTTAAAAAAATAATAAAAATAAATAAAATAAAT AATAATAATAAAATATATATATATATATATAATATTATGATACATATATATATTTATGTATTGAT AATATTCATATATCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATC TATAAAAATTGTAAATTAATAAATAAATAAATATATATATATATATATATATATATATTTTTTTT TTTATGATTAATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATA TATACAAACACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTT ATAAACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAA Right flanking sequence: Indices 78732 -- 79231 AATTAAAGGATAACAATTATTTATGTGGCTTTAACAAAAAAAAAAAAATAAAATAAAATAATAAA TAAATAAAATAATAATAAATATACATACACTAGTAATTATGCTTATTTCATTACTTTAAATAAAA GGCATATACTAAATAATATTAAATATTTGATACATTTATTTCTTAAAAATCAAGAATAATAATAA TTATATAGAGTGTTATTTAAAAAAGGTTATAAATAAGCACGTACTTTCTATGAATAAAAATTAAT ATAACTCAACAAGTATTACTATATTGTAATGTATTATAATGTATTGTATTTTTTTTATTTTTGGA GAAAAGGCTAATTTAAAAATTTTCTTTAAATATTATTCAAACATATATACATATTATATATATAT ATATATATACATAGATATATGTATTTATTTATTTATTTATTTATTTATTTAATGATTTATATGAA GACATAATAAAAGCATATTATATATATCAACAAAAAATATATTAA Found at i:78801 original size:16 final size:16 Alignment explanation
Indices: 78769--78817 Score: 68 Period size: 16 Copynumber: 3.1 Consensus size: 16 78759 GCTTTAACAA * * 78769 AAAAAAAAAAATAAAAT 1 AAAATAATAAAT-AAAT 78786 AAAATAATAAATAAAT 1 AAAATAATAAATAAAT 78802 AAAATAAT-AATAAAT 1 AAAATAATAAATAAAT 78817 A 1 A 78818 TACATACACT Statistics Matches: 30, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 15 8 0.27 16 12 0.40 17 10 0.33 ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20 Consensus pattern (16 bp): AAAATAATAAATAAAT Left flanking sequence: Indices 78269 -- 78768 ATTCATATATCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATCTAT AAAAATTGTAAATTAATAAATAAATAAATATATATATATATATATATATATATATTTTTTTTTTT ATGATTAATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATATAT ACAAACACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTTATA AACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTATAAAAAAAAAAAAAAAAATTATG AAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTATAAAACCGATAAAAAAAAAAAA AAAAAAAAAATTAAAGGATAACAATTATTTATGTGGCTTTAACAA Right flanking sequence: Indices 78818 -- 79317 TACATACACTAGTAATTATGCTTATTTCATTACTTTAAATAAAAGGCATATACTAAATAATATTA AATATTTGATACATTTATTTCTTAAAAATCAAGAATAATAATAATTATATAGAGTGTTATTTAAA AAAGGTTATAAATAAGCACGTACTTTCTATGAATAAAAATTAATATAACTCAACAAGTATTACTA TATTGTAATGTATTATAATGTATTGTATTTTTTTTATTTTTGGAGAAAAGGCTAATTTAAAAATT TTCTTTAAATATTATTCAAACATATATACATATTATATATATATATATATATACATAGATATATG TATTTATTTATTTATTTATTTATTTATTTAATGATTTATATGAAGACATAATAAAAGCATATTAT ATATATCAACAAAAAATATATTAATATAAGTATATATTTAATATATTTATTTATTTTTATTTAAT TCAAGATTATGAAGTCATTATACGTTATATAAATAATTATCATTA Found at i:79034 original size:15 final size:15 Alignment explanation
Indices: 79011--79041 Score: 48 Period size: 15 Copynumber: 2.1 Consensus size: 15 79001 CAAGTATTAC * 79011 TATATTGTAATGTAT 1 TATAATGTAATGTAT * 79026 TATAATGTATTGTAT 1 TATAATGTAATGTAT 79041 T 1 T 79042 TTTTTTATTT Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 15 14 1.00 ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55 Consensus pattern (15 bp): TATAATGTAATGTAT Left flanking sequence: Indices 78511 -- 79010 CCACATTTTGTATTTATAAACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTATAAAA AAAAAAAAAAAAATTATGAAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTATAAA ACCGATAAAAAAAAAAAAAAAAAAAAAATTAAAGGATAACAATTATTTATGTGGCTTTAACAAAA AAAAAAAAATAAAATAAAATAATAAATAAATAAAATAATAATAAATATACATACACTAGTAATTA TGCTTATTTCATTACTTTAAATAAAAGGCATATACTAAATAATATTAAATATTTGATACATTTAT TTCTTAAAAATCAAGAATAATAATAATTATATAGAGTGTTATTTAAAAAAGGTTATAAATAAGCA CGTACTTTCTATGAATAAAAATTAATATAACTCAACAAGTATTAC Right flanking sequence: Indices 79042 -- 79541 TTTTTTATTTTTGGAGAAAAGGCTAATTTAAAAATTTTCTTTAAATATTATTCAAACATATATAC ATATTATATATATATATATATATACATAGATATATGTATTTATTTATTTATTTATTTATTTATTT AATGATTTATATGAAGACATAATAAAAGCATATTATATATATCAACAAAAAATATATTAATATAA GTATATATTTAATATATTTATTTATTTTTATTTAATTCAAGATTATGAAGTCATTATACGTTATA TAAATAATTATCATTATTAAAACTTAAATTTTTGAAACGTTCTTATATAACAAAAAGCACTTTAA ATGCACAAGAGATTTAAAAACCTCATCCCTTTTCTTCAAATATATAAATAAAGAATAAGTTCCTA TACTATTTTTATGAAATTGGAAAAAATTAAAATATAATTAAAGACAATTCTTTTAAAATGAGTTT ATTATACATGTGTATGCACGGTAATAACCAAAAAAAGAAAAAAAA Found at i:79250 original size:17 final size:17 Alignment explanation
Indices: 79223--79263 Score: 54 Period size: 17 Copynumber: 2.5 Consensus size: 17 79213 TCAACAAAAA 79223 ATATA-TTAATATAAGT 1 ATATATTTAATATAAGT ** 79239 ATATATTTAATATATTT 1 ATATATTTAATATAAGT * 79256 ATTTATTT 1 ATATATTT 79264 TTATTTAATT Statistics Matches: 21, Mismatches: 3, Indels: 1 0.84 0.12 0.04 Matches are distributed among these distances: 16 5 0.24 17 16 0.76 ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56 Consensus pattern (17 bp): ATATATTTAATATAAGT Left flanking sequence: Indices 78723 -- 79222 AAAAAAAAAAATTAAAGGATAACAATTATTTATGTGGCTTTAACAAAAAAAAAAAAATAAAATAA AATAATAAATAAATAAAATAATAATAAATATACATACACTAGTAATTATGCTTATTTCATTACTT TAAATAAAAGGCATATACTAAATAATATTAAATATTTGATACATTTATTTCTTAAAAATCAAGAA TAATAATAATTATATAGAGTGTTATTTAAAAAAGGTTATAAATAAGCACGTACTTTCTATGAATA AAAATTAATATAACTCAACAAGTATTACTATATTGTAATGTATTATAATGTATTGTATTTTTTTT ATTTTTGGAGAAAAGGCTAATTTAAAAATTTTCTTTAAATATTATTCAAACATATATACATATTA TATATATATATATATATACATAGATATATGTATTTATTTATTTATTTATTTATTTATTTAATGAT TTATATGAAGACATAATAAAAGCATATTATATATATCAACAAAAA Right flanking sequence: Indices 79264 -- 79763 TTATTTAATTCAAGATTATGAAGTCATTATACGTTATATAAATAATTATCATTATTAAAACTTAA ATTTTTGAAACGTTCTTATATAACAAAAAGCACTTTAAATGCACAAGAGATTTAAAAACCTCATC CCTTTTCTTCAAATATATAAATAAAGAATAAGTTCCTATACTATTTTTATGAAATTGGAAAAAAT TAAAATATAATTAAAGACAATTCTTTTAAAATGAGTTTATTATACATGTGTATGCACGGTAATAA CCAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAAGTGGCACTTAATAAAAAGTTACATTTTGTTAT ATATGTTATTACATGTATCAATCCTTATTCTCATAAAAAATGAAAAAAATATATGCCTTTCTAGA TCATACACATAATTATATATATGTCTTATATACAAATAGAATTATTCTTAGCAATTTTTATTTAT TACATAAAAATATTATTTACTTCAATATATATATATATATATATG Found at i:79546 original size:15 final size:15 Alignment explanation
Indices: 79526--79556 Score: 62 Period size: 15 Copynumber: 2.1 Consensus size: 15 79516 GGTAATAACC 79526 AAAAAAAGAAAAAAA 1 AAAAAAAGAAAAAAA 79541 AAAAAAAGAAAAAAA 1 AAAAAAAGAAAAAAA 79556 A 1 A 79557 GTGGCACTTA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00 Consensus pattern (15 bp): AAAAAAAGAAAAAAA Left flanking sequence: Indices 79026 -- 79525 TATAATGTATTGTATTTTTTTTATTTTTGGAGAAAAGGCTAATTTAAAAATTTTCTTTAAATATT ATTCAAACATATATACATATTATATATATATATATATATACATAGATATATGTATTTATTTATTT ATTTATTTATTTATTTAATGATTTATATGAAGACATAATAAAAGCATATTATATATATCAACAAA AAATATATTAATATAAGTATATATTTAATATATTTATTTATTTTTATTTAATTCAAGATTATGAA GTCATTATACGTTATATAAATAATTATCATTATTAAAACTTAAATTTTTGAAACGTTCTTATATA ACAAAAAGCACTTTAAATGCACAAGAGATTTAAAAACCTCATCCCTTTTCTTCAAATATATAAAT AAAGAATAAGTTCCTATACTATTTTTATGAAATTGGAAAAAATTAAAATATAATTAAAGACAATT CTTTTAAAATGAGTTTATTATACATGTGTATGCACGGTAATAACC Right flanking sequence: Indices 79557 -- 80056 GTGGCACTTAATAAAAAGTTACATTTTGTTATATATGTTATTACATGTATCAATCCTTATTCTCA TAAAAAATGAAAAAAATATATGCCTTTCTAGATCATACACATAATTATATATATGTCTTATATAC AAATAGAATTATTCTTAGCAATTTTTATTTATTACATAAAAATATTATTTACTTCAATATATATA TATATATATATGTATATACATTTTTAACTTTTCTGTATTATCTTACTTAAAAATAAAGAAAACAA ATAAAATAATGTATTTGTATATTTATATTTTTTATTAATTTTTTTTTTTTTTTTTTTGTGTCTAA TATGGAATGCTCATAATAGCTGCTTTGTGTTTATAACAATTGGACAAGTTCAAATTTTTATAAGA AAAAAAAAAAAACAAATAAAAATATATATACATATATATTATAATTTATATATTTTGCGTAGAAA CAAATTTTATATTTTTTTTTATTATATTATAAATTTTTCTTATAT Found at i:79860 original size:13 final size:13 Alignment explanation
Indices: 79836--79873 Score: 48 Period size: 13 Copynumber: 3.0 Consensus size: 13 79826 TGTATTTGTA * 79836 TATTTATATTTTT 1 TATTTATTTTTTT * 79849 TATTAATTTTTTT 1 TATTTATTTTTTT * 79862 T-TTTTTTTTTTT 1 TATTTATTTTTTT 79874 GTGTCTAATA Statistics Matches: 21, Mismatches: 4, Indels: 1 0.81 0.15 0.04 Matches are distributed among these distances: 12 9 0.43 13 12 0.57 ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84 Consensus pattern (13 bp): TATTTATTTTTTT Left flanking sequence: Indices 79336 -- 79835 AAACGTTCTTATATAACAAAAAGCACTTTAAATGCACAAGAGATTTAAAAACCTCATCCCTTTTC TTCAAATATATAAATAAAGAATAAGTTCCTATACTATTTTTATGAAATTGGAAAAAATTAAAATA TAATTAAAGACAATTCTTTTAAAATGAGTTTATTATACATGTGTATGCACGGTAATAACCAAAAA AAGAAAAAAAAAAAAAAGAAAAAAAAGTGGCACTTAATAAAAAGTTACATTTTGTTATATATGTT ATTACATGTATCAATCCTTATTCTCATAAAAAATGAAAAAAATATATGCCTTTCTAGATCATACA CATAATTATATATATGTCTTATATACAAATAGAATTATTCTTAGCAATTTTTATTTATTACATAA AAATATTATTTACTTCAATATATATATATATATATATGTATATACATTTTTAACTTTTCTGTATT ATCTTACTTAAAAATAAAGAAAACAAATAAAATAATGTATTTGTA Right flanking sequence: Indices 79874 -- 80373 GTGTCTAATATGGAATGCTCATAATAGCTGCTTTGTGTTTATAACAATTGGACAAGTTCAAATTT TTATAAGAAAAAAAAAAAAACAAATAAAAATATATATACATATATATTATAATTTATATATTTTG CGTAGAAACAAATTTTATATTTTTTTTTATTATATTATAAATTTTTCTTATATTAAGAATTGTAT ATATATATATATATATATATATATAATACGATGAAGTCCTATTTTTTTTTTTTTTTTTTTTTTTT CTTATATCATTCTTATGGACTTTAATGAAAAAAAGTAACACTTGTCTTTTTATATATACATAAAT TTTTATAACTCCTAATATATATATATATATATATATATATATATATATATATTTATTTATTTATT TATATATTTGTCTTTTGTTATGTCCTCATATTTATCTTCCAAGTATCAAAACAATTTATTGTAAT TTTTTTTTCAACCTTCCATTCTATCATATGTATCATATATATATA Found at i:80064 original size:18 final size:18 Alignment explanation
Indices: 80027--80064 Score: 55 Period size: 18 Copynumber: 2.1 Consensus size: 18 80017 TTTATATTTT * 80027 TTTTTATTATATTATAAA 1 TTTTTATTATATTAAAAA * * 80045 TTTTTCTTATATTAAGAA 1 TTTTTATTATATTAAAAA 80063 TT 1 TT 80065 GTATATATAT Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 18 17 1.00 ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61 Consensus pattern (18 bp): TTTTTATTATATTAAAAA Left flanking sequence: Indices 79527 -- 80026 AAAAAAGAAAAAAAAAAAAAAGAAAAAAAAGTGGCACTTAATAAAAAGTTACATTTTGTTATATA TGTTATTACATGTATCAATCCTTATTCTCATAAAAAATGAAAAAAATATATGCCTTTCTAGATCA TACACATAATTATATATATGTCTTATATACAAATAGAATTATTCTTAGCAATTTTTATTTATTAC ATAAAAATATTATTTACTTCAATATATATATATATATATATGTATATACATTTTTAACTTTTCTG TATTATCTTACTTAAAAATAAAGAAAACAAATAAAATAATGTATTTGTATATTTATATTTTTTAT TAATTTTTTTTTTTTTTTTTTTGTGTCTAATATGGAATGCTCATAATAGCTGCTTTGTGTTTATA ACAATTGGACAAGTTCAAATTTTTATAAGAAAAAAAAAAAAACAAATAAAAATATATATACATAT ATATTATAATTTATATATTTTGCGTAGAAACAAATTTTATATTTT Right flanking sequence: Indices 80065 -- 80564 GTATATATATATATATATATATATATATAATACGATGAAGTCCTATTTTTTTTTTTTTTTTTTTT TTTTCTTATATCATTCTTATGGACTTTAATGAAAAAAAGTAACACTTGTCTTTTTATATATACAT AAATTTTTATAACTCCTAATATATATATATATATATATATATATATATATATATATTTATTTATT TATTTATATATTTGTCTTTTGTTATGTCCTCATATTTATCTTCCAAGTATCAAAACAATTTATTG TAATTTTTTTTTCAACCTTCCATTCTATCATATGTATCATATATATATATAACAATATAGAGTTT GTTAATAACAATCTTCTAACTTTTTTTTCTACACCAAGAAAAAAAGTATAATCATTATAATATTA TAAAATATAAAAGTCCAAAAAAAAAAAGTAAATTATATGATATAATATCATTGAATATATGACAT AACGTTTTGAATACAAAAAAATAAATAAATATATATATATATATA Found at