TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739984 P. falciparum 3D7 GENOMIC chr10 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1694445 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Warning! 85 characters in sequence are not A, C, G, or T Found at i: i:27769 original size:16 final size:16 Alignment explanation
Indices: 27750--27783 Score: 47 Period size: 16 Copynumber: 2.1 Consensus size: 16 27740 AAAATAAGAA 27750 TATAAAATATTATATT 1 TATAAAATATTATATT ** * 27766 TATAATGTATTATTTT 1 TATAAAATATTATATT 27782 TA 1 TA 27784 ATATAATGAA Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56 Consensus pattern (16 bp): TATAAAATATTATATT Left flanking sequence: Indices 27250 -- 27749 AATGTAAGTACGAAAAATATGAAAATCGAAATGGAAGATACCCAAAAAATCGAAATCGTGCACGG ACACATGCAGTAACCGAGAATTATTATATATATATATATGTATATATGTATATATGTATATTTGA TTTAACAATACGTATGCATTTATGTATATATATATGTTGAGAGAATACGTATGCTCTTGTATATA TTTATGTTGGAGGAATACGTATGCCGATATATATATATTTTTATGCTCATGGAATACGTATTCTT TTATATGTATACATTTAAGGTAGTATTAAGTAATATATAAAACATAAAATAAATATTATTTTAAA AATTATTATAATTAATAATATAACAATTTTTTTATCTCCTTTTTATTAATTTTTTTTTTTTTTTT TTTTTTTCGATACCCTTTTGTTCTCGATCTCATTTCTACCTTATATTACATGATATGTCATATAT TATATAATATATTATAAATTATAATATAAAAAAAAAAAATAAGAA Right flanking sequence: Indices 27784 -- 28283 ATATAATGAAAAATATAAATATATATATATATATATGCATATATATTTTTTTATGTAGATATATG ATAGATAGTATGGATAGAGAGAAACAGAAGAAGATATTTGCCTCTGTTGTTATCTCTAAAATATA TATATAATTAATTAATATAAGGCGAAAAAAAAAAAATATATTAAAGATAATAATTAAATATAGAA ACATCTTGTATTTTTTTTTTTGTATGTTTGTATTTTCGTATTTTTTTTTTTCTCATATATAATTT TAGAAAATATAAAAAACATAAGAAAATAATATATATAATTGAATAAGTAAATAAAGGAATACATC AAATATATTATTCTTTATTATATAATATTTTTTGTTAGAATATTTATATTTATTATAAAAATATT AATATAAATTTTTTTAAAAATATATATATAAAACTAATAATTATTATTATATACATATGAAATAT TATTTATTAATATATATTATATATATATTATAATATTACAACTAT Found at i:27838 original size:18 final size:18 Alignment explanation
Indices: 27804--27847 Score: 53 Period size: 18 Copynumber: 2.4 Consensus size: 18 27794 AAATATAAAT 27804 ATATATATATATATATGC 1 ATATATATATATATATGC * * * * 27822 ATATATATTTTTTTATGT 1 ATATATATATATATATGC * 27840 AGATATAT 1 ATATATAT 27848 GATAGATAGT Statistics Matches: 21, Mismatches: 5, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 18 21 1.00 ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52 Consensus pattern (18 bp): ATATATATATATATATGC Left flanking sequence: Indices 27304 -- 27803 ATCGTGCACGGACACATGCAGTAACCGAGAATTATTATATATATATATATGTATATATGTATATA TGTATATTTGATTTAACAATACGTATGCATTTATGTATATATATATGTTGAGAGAATACGTATGC TCTTGTATATATTTATGTTGGAGGAATACGTATGCCGATATATATATATTTTTATGCTCATGGAA TACGTATTCTTTTATATGTATACATTTAAGGTAGTATTAAGTAATATATAAAACATAAAATAAAT ATTATTTTAAAAATTATTATAATTAATAATATAACAATTTTTTTATCTCCTTTTTATTAATTTTT TTTTTTTTTTTTTTTTTTCGATACCCTTTTGTTCTCGATCTCATTTCTACCTTATATTACATGAT ATGTCATATATTATATAATATATTATAAATTATAATATAAAAAAAAAAAATAAGAATATAAAATA TTATATTTATAATGTATTATTTTTAATATAATGAAAAATATAAAT Right flanking sequence: Indices 27848 -- 28347 GATAGATAGTATGGATAGAGAGAAACAGAAGAAGATATTTGCCTCTGTTGTTATCTCTAAAATAT ATATATAATTAATTAATATAAGGCGAAAAAAAAAAAATATATTAAAGATAATAATTAAATATAGA AACATCTTGTATTTTTTTTTTTGTATGTTTGTATTTTCGTATTTTTTTTTTTCTCATATATAATT TTAGAAAATATAAAAAACATAAGAAAATAATATATATAATTGAATAAGTAAATAAAGGAATACAT CAAATATATTATTCTTTATTATATAATATTTTTTGTTAGAATATTTATATTTATTATAAAAATAT TAATATAAATTTTTTTAAAAATATATATATAAAACTAATAATTATTATTATATACATATGAAATA TTATTTATTAATATATATTATATATATATTATAATATTACAACTATTATAATTAATATATATATA TAAATATATATATAATACTTATATATATATATATTCCAACACAAT Found at i:27866 original size:13 final size:11 Alignment explanation
Indices: 27835--27866 Score: 39 Period size: 11 Copynumber: 2.8 Consensus size: 11 27825 TATATTTTTT 27835 TATG-TAGATA 1 TATGATAGATA 27845 TATGATAGATA 1 TATGATAGATA 27856 GTATGGATAGA 1 -TAT-GATAGA 27867 GAGAAACAGA Statistics Matches: 19, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 10 4 0.21 11 6 0.32 12 3 0.16 13 6 0.32 ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34 Consensus pattern (11 bp): TATGATAGATA Left flanking sequence: Indices 27335 -- 27834 TTATTATATATATATATATGTATATATGTATATATGTATATTTGATTTAACAATACGTATGCATT TATGTATATATATATGTTGAGAGAATACGTATGCTCTTGTATATATTTATGTTGGAGGAATACGT ATGCCGATATATATATATTTTTATGCTCATGGAATACGTATTCTTTTATATGTATACATTTAAGG TAGTATTAAGTAATATATAAAACATAAAATAAATATTATTTTAAAAATTATTATAATTAATAATA TAACAATTTTTTTATCTCCTTTTTATTAATTTTTTTTTTTTTTTTTTTTTTTCGATACCCTTTTG TTCTCGATCTCATTTCTACCTTATATTACATGATATGTCATATATTATATAATATATTATAAATT ATAATATAAAAAAAAAAAATAAGAATATAAAATATTATATTTATAATGTATTATTTTTAATATAA TGAAAAATATAAATATATATATATATATATGCATATATATTTTTT Right flanking sequence: Indices 27867 -- 28366 GAGAAACAGAAGAAGATATTTGCCTCTGTTGTTATCTCTAAAATATATATATAATTAATTAATAT AAGGCGAAAAAAAAAAAATATATTAAAGATAATAATTAAATATAGAAACATCTTGTATTTTTTTT TTTGTATGTTTGTATTTTCGTATTTTTTTTTTTCTCATATATAATTTTAGAAAATATAAAAAACA TAAGAAAATAATATATATAATTGAATAAGTAAATAAAGGAATACATCAAATATATTATTCTTTAT TATATAATATTTTTTGTTAGAATATTTATATTTATTATAAAAATATTAATATAAATTTTTTTAAA AATATATATATAAAACTAATAATTATTATTATATACATATGAAATATTATTTATTAATATATATT ATATATATATTATAATATTACAACTATTATAATTAATATATATATATAAATATATATATAATACT TATATATATATATATTCCAACACAATACTATTATTATTATTCTAC Found at i:27971 original size:13 final size:14 Alignment explanation
Indices: 27948--27975 Score: 42 Period size: 13 Copynumber: 2.1 Consensus size: 14 27938 AAAAAAAAAA 27948 AATATATTAAAGAT 1 AATATATTAAAGAT * 27962 AATA-ATTAAATAT 1 AATATATTAAAGAT 27975 A 1 A 27976 GAAACATCTT Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 13 9 0.69 14 4 0.31 ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36 Consensus pattern (14 bp): AATATATTAAAGAT Left flanking sequence: Indices 27448 -- 27947 ATGTTGGAGGAATACGTATGCCGATATATATATATTTTTATGCTCATGGAATACGTATTCTTTTA TATGTATACATTTAAGGTAGTATTAAGTAATATATAAAACATAAAATAAATATTATTTTAAAAAT TATTATAATTAATAATATAACAATTTTTTTATCTCCTTTTTATTAATTTTTTTTTTTTTTTTTTT TTTTCGATACCCTTTTGTTCTCGATCTCATTTCTACCTTATATTACATGATATGTCATATATTAT ATAATATATTATAAATTATAATATAAAAAAAAAAAATAAGAATATAAAATATTATATTTATAATG TATTATTTTTAATATAATGAAAAATATAAATATATATATATATATATGCATATATATTTTTTTAT GTAGATATATGATAGATAGTATGGATAGAGAGAAACAGAAGAAGATATTTGCCTCTGTTGTTATC TCTAAAATATATATATAATTAATTAATATAAGGCGAAAAAAAAAA Right flanking sequence: Indices 27976 -- 28475 GAAACATCTTGTATTTTTTTTTTTGTATGTTTGTATTTTCGTATTTTTTTTTTTCTCATATATAA TTTTAGAAAATATAAAAAACATAAGAAAATAATATATATAATTGAATAAGTAAATAAAGGAATAC ATCAAATATATTATTCTTTATTATATAATATTTTTTGTTAGAATATTTATATTTATTATAAAAAT ATTAATATAAATTTTTTTAAAAATATATATATAAAACTAATAATTATTATTATATACATATGAAA TATTATTTATTAATATATATTATATATATATTATAATATTACAACTATTATAATTAATATATATA TATAAATATATATATAATACTTATATATATATATATTCCAACACAATACTATTATTATTATTCTA CCATATTACCATACTCCCATAACATACATACAATCACCCCACACCACACCACACCACCAAACCAT GTATGCCACGATATAAACCACGTATGCATGACATAATGTAGTCCG Found at i:28044 original size:30 final size:30 Alignment explanation
Indices: 27986--28044 Score: 74 Period size: 30 Copynumber: 2.0 Consensus size: 30 27976 GAAACATCTT * * * * 27986 GTATTTTTTTTTTTGTATGTTTGTATTTTC 1 GTATTTTTTTTTTTCTATATATGAATTTTC 28016 GTATTTTTTTTTTTCTCATATAT-AATTTT 1 GTATTTTTTTTTTTCT-ATATATGAATTTT 28045 AGAAAATATA Statistics Matches: 24, Mismatches: 4, Indels: 2 0.80 0.13 0.07 Matches are distributed among these distances: 30 20 0.83 31 4 0.17 ACGTcount: A:0.15, C:0.05, G:0.08, T:0.71 Consensus pattern (30 bp): GTATTTTTTTTTTTCTATATATGAATTTTC Left flanking sequence: Indices 27486 -- 27985 TATGCTCATGGAATACGTATTCTTTTATATGTATACATTTAAGGTAGTATTAAGTAATATATAAA ACATAAAATAAATATTATTTTAAAAATTATTATAATTAATAATATAACAATTTTTTTATCTCCTT TTTATTAATTTTTTTTTTTTTTTTTTTTTTTCGATACCCTTTTGTTCTCGATCTCATTTCTACCT TATATTACATGATATGTCATATATTATATAATATATTATAAATTATAATATAAAAAAAAAAAATA AGAATATAAAATATTATATTTATAATGTATTATTTTTAATATAATGAAAAATATAAATATATATA TATATATATGCATATATATTTTTTTATGTAGATATATGATAGATAGTATGGATAGAGAGAAACAG AAGAAGATATTTGCCTCTGTTGTTATCTCTAAAATATATATATAATTAATTAATATAAGGCGAAA AAAAAAAAATATATTAAAGATAATAATTAAATATAGAAACATCTT Right flanking sequence: Indices 28045 -- 28544 AGAAAATATAAAAAACATAAGAAAATAATATATATAATTGAATAAGTAAATAAAGGAATACATCA AATATATTATTCTTTATTATATAATATTTTTTGTTAGAATATTTATATTTATTATAAAAATATTA ATATAAATTTTTTTAAAAATATATATATAAAACTAATAATTATTATTATATACATATGAAATATT ATTTATTAATATATATTATATATATATTATAATATTACAACTATTATAATTAATATATATATATA AATATATATATAATACTTATATATATATATATTCCAACACAATACTATTATTATTATTCTACCAT ATTACCATACTCCCATAACATACATACAATCACCCCACACCACACCACACCACCAAACCATGTAT GCCACGATATAAACCACGTATGCATGACATAATGTAGTCCGAAACAATAAAACAAAATGGCGGCG CAAAGTAGTGGTGGGGGTGGAGGTTGTGGTGAGGAAGATAAAGAT Found at i:29140 original size:12 final size:12 Alignment explanation
Indices: 29119--29145 Score: 40 Period size: 12 Copynumber: 2.2 Consensus size: 12 29109 CAAAGAAAAA * 29119 AAAAATTAGAAG 1 AAAAATTAGAAC * 29131 AAAGATTAGAAC 1 AAAAATTAGAAC 29143 AAA 1 AAA 29146 TGTTTAAGAA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.67, C:0.04, G:0.15, T:0.15 Consensus pattern (12 bp): AAAAATTAGAAC Left flanking sequence: Indices 28619 -- 29118 TTATTTGAAAGGAAATTTGACAATATCAACAATTTTTGGTGAGGAAACAGTTGCCTTCACAGATC CGTGCGAGCTTATAAAAGAAAAACGTGATGAACTTCTTGCTGCTCGCGGTGATCCGTGCGGAAAA GGAAAAGAACATCGTTTTTCTAAAGAACGTGGCGCTGAATGTGATGATAACAAAATTGAAGGTAA TGTTCGTAGTAAAGGTAAAGGAGGTAAGAGTGCAGGTGCATGTGCTCCATATAGACGGTTATCTC TATGTAACAAAAATTTTCCAAATATGAATAGTAAGGATAGTTTGAAAGCTAAAAATGATTTATTG GTAGATGTGTGTTATGCAGCAAAATACGAGGCAGAGTCATTAATACCTTATCATGACCAATATAA ATTAACTTATGGTGATTCTCAAATATGTACTGTATTAGCCCGAAGTTTTGCAGATATAGGTGATA TTGTCAGAGGAAAAGATCTTTTCCTTGGTCATAATCAAAGAAAAA Right flanking sequence: Indices 29146 -- 29645 TGTTTAAGAACATTACGCATAGTAATGCGGCTAAACTAAGTGTACTTTCAAGCAAAGAAATTAGG GAATATTGGTGGGCTCTTAATAGAGACCAAGTATGGAAAGCACTAACATGTGACGAAGAGAACAA GCTAGGGGGTAATGCATATTTTCATGCAACGTGCAGTGAACGTAATGGAGGTTGTTCTCAAGCTC ATGAAAAATGCAGGTGTCCCATGACAAGTGATGGCAAGCCCAATGACCAAGTCCCCACGTATTTT GACTACGTGCCGCAGTATCTTCGCTGGTTCGAGGAATGGGCAGAAGATTTTTGCAGGAAAAAAAA AATATATGTTGATATAGTTAAAAAATATTGTCGTGGAGAAAGAGATGGTGAGAAATATTGTAGTT TGAATGGCTGCGATTGCACAAAAACTGTTAGAGCACGAGGTAAGTTGCGTTATGGTAATAGATGC ACGGACTGTTTGTTTGCATGTCATCGTTATGAAAATTGGATAGAT Found at i:30705 original size:12 final size:12 Alignment explanation
Indices: 30678--30707 Score: 39 Period size: 12 Copynumber: 2.5 Consensus size: 12 30668 GAAAGGCGAT * ** 30678 TCCGAAGACAGT 1 TCCGAAGAAAAA 30690 TCCGAAGAAAAA 1 TCCGAAGAAAAA 30702 TCCGAA 1 TCCGAA 30708 AATAGTCTGG Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.43, C:0.23, G:0.20, T:0.13 Consensus pattern (12 bp): TCCGAAGAAAAA Left flanking sequence: Indices 30178 -- 30677 GTGGTAACAGTGATAGTAAGGAACTTTATGATGAATGGCAATGTTATGAATTTAAACAGCTGACG ACAGATGGTCAGGAGGACGATGATGACGAGGACTATGACAAGGATGTAAGAACTGGAGGCGGATT ATGTATATTGGAAAAAAAAAAAGAAGAAGGTGAAGCCAAATCTCAAAATGAACCTGATGAAATCC AAAAGACATACAATGATTTTTTTTACTATTGGGTGGCACATATGTTAAAAGATTCTATACATTGG AGAACAAAAAAACTTGATAAGTGTATAAATAACACTAATAAATCAAAAGCATGTAAAAACAGTAA TAAATGTAATAATGATTGTGGTTGTTTTCAAAAATGGGTTGATCAAAAAAAAGAAAAGGAATGGG ACGCAATAAAACAACAATTTCGCAAGCAAAAAGATATTGGAGATGAAACAAATTGTGATCCTATC GTAACTCTTGAAGGTGTTTTGCAAATAGAATTTTTGAAAGGCGAT Right flanking sequence: Indices 30708 -- 31207 AATAGTCTGGATGCAAAGGAAATACAACACCTTCGCCAAATGTTGAAACAAGCAGGTGTTGCTAT TGGTCTTGATGCTTTTGTTGCTCTTCGTGGTCGGTGTACTGAAGGTGGTGCCGACAGTCAAAATA AGACCACAATTGATAAATTGCTCGATGAGGAAGCAAAAGAAGCCAAAGATTGCCAATCAAAACAC AAAGATCCCTGTCCCAAACCACAAGATGGTGTTGCCGGTCGTTCCGCCGAACACCCCGAAGAGCA GGAGGAGGAAGAAGAAGACGACGACGAAGAGATCGAGGAGAAGTCGGAGGAAAACGACGAGGAGT CGGAAAAGACGGTGGAGGACAAGGAGACAGAGGCGGAAAACGTCGCAGAGGTACCACCAACAACA CAAGACAATGCGGAGAAGCCATGTGATATAGTGGCTGAACTATTTAAAAAACCGGACACTCTCAA ACAAGCCTGTCCAACCAAATATGGAAGTAAAGCACCCACAAGTTG Found at i:31816 original size:21 final size:21 Alignment explanation
Indices: 31790--31848 Score: 97 Period size: 21 Copynumber: 2.8 Consensus size: 21 31780 ATATATTATT * 31790 TAGTGGTAGTAACGACACAAC 1 TAGTGGTAGTAAAGACACAAC * 31811 TAGTGGTAGTAAAGACACATC 1 TAGTGGTAGTAAAGACACAAC * 31832 TAGTGGTAGTAATGACA 1 TAGTGGTAGTAAAGACA 31849 ACCTCAAACA Statistics Matches: 35, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 21 35 1.00 ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24 Consensus pattern (21 bp): TAGTGGTAGTAAAGACACAAC Left flanking sequence: Indices 31290 -- 31789 GGTGCCACTGGCAAAAGTGGTGGTAGTGATACTGGTAGTGTTTGTATCCCACCCAGGAGGCGAAA ACTATATGTGGGTGAGTTAACGAAGTGGGCGGAAAGCAAACAGGTGGCACAAGCACAAACAACTG ACACACAGACACAAGTTGACGCCGCGTCGACATCGACGTCACAGACGTCTCTCCTCCGCGACGCG TTTATTCAATCTGCGGCAGTGGAAACTTTTTTTTTGTGGCATAGATACAAAAAAGAGTGGGAATT GCGACAAAAGGAGGCGGAACAAGGACAAAGTGGATTACCAGGAATTGGTGTGCCTGGAGCTGGGA TACCTGTAGTGCCTGGGGCAGGAATACCAGGAGTAGTAGGTGCGAACGGCCTATCACAACCAGTA CTCGGTGTAGACAATGACAACCCCCAAACATCGTTACAAAATGGTACAATCCCCACCGATTTTTT GCGTCAAATGTTTTATACTTTAGGTGATTATAGGGATATATTATT Right flanking sequence: Indices 31849 -- 32348 ACCTCAAACATATTGTTCTTAATGCAGGGGGTGACCAGAAGAGCAAGGATGAAATGCAGACAATA CAAACAGCTATAAGTAGCTATTTTTCAAATAGTGGTAAACCTTCTACTAGTGTCACACCTGTCAC CCAACCTAGTGGCACAACCCCTCAAGCCTTGTGGTCAAAATACGCCGAATCTATCTGGAATGGAA TGGTATGTGCCTTAACCTATAGAGATAGTGGCGACAAAGGCGGAAAACCACAAAAAGTTGAAGCT GCGAACGGCAAACTTTTCCAACAACTCAAAGACAAATACGGCGAATACGACAAAGTAAAACTCGA AGAAGAAGATAGTGAGAACCAAGCCAAAGGTAGCTCCTCCCAACACCCCGAAAACCCCTCAACCA CTAGTGAAAACAAACCCACCCACCTCACCGACTTTATATCACGCCCCCCCTACTTCCGATACCTT GAAGAATGGGGTCAAAATTTTTGTAAAAAACGAACAGAGATGTTG Found at i:32802 original size:12 final size:12 Alignment explanation
Indices: 32785--32809 Score: 43 Period size: 12 Copynumber: 2.1 Consensus size: 12 32775 AATGTTATAC * 32785 GTGGTAGAAGTG 1 GTGGTAGAAATG 32797 GTGGTAGAAATG 1 GTGGTAGAAATG 32809 G 1 G 32810 ATGTAATGTT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.28, C:0.00, G:0.48, T:0.24 Consensus pattern (12 bp): GTGGTAGAAATG Left flanking sequence: Indices 32285 -- 32784 CCCCTACTTCCGATACCTTGAAGAATGGGGTCAAAATTTTTGTAAAAAACGAACAGAGATGTTGG GGAAAATTAAAGATAATTGTACGGAAGATGGTGGTAAAACAAAAAAATGTAGTGGGGATGGACAT GATTGTACTGATGGCAAACGTAGATATAATAATATGTTTGATGATTTAGATTGTCGTCCTTGTTA TGAACAATGTAGAAAATATAGAAAATGGATAGATATAAAATTCGTAGAATATCAAAATCAAAAAA ATAAATATGGAGAGGAACATGAAAAATTAAAAACTAATTCTAATGGTGATAATAATTGTTGTACA GAAATAAAAGAAAAAACTTCTGCTGCAGATTTTTTGAAAGCATTGAAACATTGCAAAGATGGTCA AACTGGTGGGGAAAAAAATAAAACACATTTTGAGAATCCTGAAACCACGTTTGGCCCCTTAGATT ATTGTAAAACGTGTCCTCCCAATAAGGTTTCTTGTAATGTTATAC Right flanking sequence: Indices 32810 -- 33309 ATGTAATGTTAAGGATAATGAAGACAAATGGAAAGAGGTTTTTGATGGAATAAGTGGAAACGGTG GAAAGAGTTCTACTATTGAAGTCGAAATGATTGATCGTAGGGGACCGTATATGAAGGAGTATATG AAAGAAAATTCAAAAAATCCATTTAAAACATCACGTTTATTTAAAGGTATAAGGAAAGAACAATG GGAATGTAAAGTTACTAATGATGATATGCATATATGTAAACTAGATCAGTTTAAGGAAAATATAA ACCTCAATCCATATACTACATTTAAAGTATTGCTACATTATTGGTTAGAAGATTTTTTATATGGT TATTATATATCAAAAAAAAAAATAGAAAAATGTACACAAAAAGAAAAAAATGCATGTGATGAAGA AACTAAAAAAAATTGTGTATGTGTGAAAACATGGGTAGAACAAAAGAAAAAGGAGTGGAAAGAAA TAAAAAAACATTTTAAAAATCGAGAACAAAAATATGGTCAGGGAA Found at i:33742 original size:27 final size:24 Alignment explanation
Indices: 33692--33738 Score: 80 Period size: 24 Copynumber: 2.0 Consensus size: 24 33682 CAGAGGAACC * 33692 ACCAAAAGAACCGGCACCAACAGG 1 ACCAAAAAAACCGGCACCAACAGG * 33716 ACCGAAAAAACCGGCACCAACAG 1 ACCAAAAAAACCGGCACCAACAG 33739 CAGGTGGTGA Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 24 21 1.00 ACGTcount: A:0.47, C:0.34, G:0.19, T:0.00 Consensus pattern (24 bp): ACCAAAAAAACCGGCACCAACAGG Left flanking sequence: Indices 33192 -- 33691 GATGAAGAAACTAAAAAAAATTGTGTATGTGTGAAAACATGGGTAGAACAAAAGAAAAAGGAGTG GAAAGAAATAAAAAAACATTTTAAAAATCGAGAACAAAAATATGGTCAGGGAAATGATATTAAGT CTAAAGTTAAAATGTTTTTGGAGACCTTGATACCTCTAATGGATCTTGTAAATAATAAAGGAAAG CATGAAAGTCTAGATGCGTTCCTGAAGTCCTATGAATGTAAATGCGCTGAGAGCTCAGGAAAAAA AGGTGGTAAAGAGAACAATATTGTTCTATGTTTGCTTGATATGCTTGAAAAAAAAGCAACACCTT GTTTATCCTCAACTAGTGACAGCTCAGAAACACCCTGTGAAAATACCCCCACCACCCTTGACGAT GACGATCCCCTTGAAGAGGAAAACCCAGTAATACACCCTCAAATTTGTGGAGATATACCAACAAC AAAAGAAACAGTGGATGAAGACGCTTGTAAACGAGCAGAGGAACC Right flanking sequence: Indices 33739 -- 34238 CAGGTGGTGAGGAAGACCAAACCGAAAAAGACACCGAAGTCAACCCCCTGGCACCGGCCCCTGCG GATGAAACCTTTGACCCGACTATCTTGCAAACAACCATTCCTTTAGGTATTGCGCTGGCATTAGG ATCTATTGCTTTTTTATTTTTGAAGGTAATATATATAGTGGTACTTATGTATATATATATGTGTT TTGTGTATATGTATGTGTGGGTATGTTTGGATATATATATATATATGTTGATGTATATGTGTTTT CTGTATATGTATGTGTTCGTATGTTTGGATATATATTTGTGTATATGTGTTTTGTGGATATCTAT GTGTGCTTACTTTTGGATATATATATGTGTATATGTATGTGTTTTATATATATTTTATATATATG TATTTATATTCAAAAAGAAAAAAATGAAAAAAATGAAAAAAAGAAAAAAAGAATATAAAAAAAAA ATTTATTACAACAACAAAAAAAGAGATTTTAATAATAATAAAAAT Found at i:34031 original size:53 final size:52 Alignment explanation
Indices: 33974--34099 Score: 169 Period size: 53 Copynumber: 2.4 Consensus size: 52 33964 ATATATATAT * * * * * 33974 ATATATGTTGATGTATATGTGTTTTCTGTATATGTATGTGTTCGTATGTTTGG 1 ATATATATTG-TGTATATGTGTTTTCTGGATATCTATGTGTGCGTACGTTTGG * * * 34027 ATATATATTTGTGTATATGTGTTTTGTGGATATCTATGTGTGCTTACTTTTGG 1 ATATATA-TTGTGTATATGTGTTTTCTGGATATCTATGTGTGCGTACGTTTGG 34080 ATATATATATGTGTATATGT 1 ATATATAT-TGTGTATATGT 34100 ATGTGTTTTA Statistics Matches: 63, Mismatches: 8, Indels: 4 0.84 0.11 0.05 Matches are distributed among these distances: 52 1 0.02 53 59 0.94 54 3 0.05 ACGTcount: A:0.21, C:0.04, G:0.22, T:0.52 Consensus pattern (52 bp): ATATATATTGTGTATATGTGTTTTCTGGATATCTATGTGTGCGTACGTTTGG Left flanking sequence: Indices 33474 -- 33973 GTTCTATGTTTGCTTGATATGCTTGAAAAAAAAGCAACACCTTGTTTATCCTCAACTAGTGACAG CTCAGAAACACCCTGTGAAAATACCCCCACCACCCTTGACGATGACGATCCCCTTGAAGAGGAAA ACCCAGTAATACACCCTCAAATTTGTGGAGATATACCAACAACAAAAGAAACAGTGGATGAAGAC GCTTGTAAACGAGCAGAGGAACCACCAAAAGAACCGGCACCAACAGGACCGAAAAAACCGGCACC AACAGCAGGTGGTGAGGAAGACCAAACCGAAAAAGACACCGAAGTCAACCCCCTGGCACCGGCCC CTGCGGATGAAACCTTTGACCCGACTATCTTGCAAACAACCATTCCTTTAGGTATTGCGCTGGCA TTAGGATCTATTGCTTTTTTATTTTTGAAGGTAATATATATAGTGGTACTTATGTATATATATAT GTGTTTTGTGTATATGTATGTGTGGGTATGTTTGGATATATATAT Right flanking sequence: Indices 34100 -- 34599 ATGTGTTTTATATATATTTTATATATATGTATTTATATTCAAAAAGAAAAAAATGAAAAAAATGA AAAAAAGAAAAAAAGAATATAAAAAAAAAATTTATTACAACAACAAAAAAAGAGATTTTAATAAT AATAAAAATTAAAATAAAAAAATAAATTTTGATAAAATAAAAAATAAAAAATTTTATCAAACAAA AATTAAAAAAAAATTATATTAATAAAAATAATGATTATAAAAAAAATTTATTAGAAATAAAATAA AAAAAAATTTATTACATAAAAAAAAAAAGAAAAAAAAAAAATATATATATATATATATATATATA TATATATATATATATATATCATAAAATACAAAAAAAAGGAAAAAAATATTAAAATAAAAATATAT ATCATAAAAAAAAAAAAAATTAAAAAAATGTTAATAAAAAAATAAATATAAAAAAAAAAAAAAAA ATTAAAAAATTTATTTAAATAAAAAAAAATTAAAAAATATAATTA Found at i:34121 original size:11 final size:11 Alignment explanation
Indices: 34105--34138 Score: 47 Period size: 11 Copynumber: 3.2 Consensus size: 11 34095 TATGTATGTG 34105 TTTTATATATA 1 TTTTATATATA 34116 TTTTATATATA 1 TTTTATATATA * * 34127 -TGTATTTATA 1 TTTTATATATA 34137 TT 1 TT 34139 CAAAAAGAAA Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 10 8 0.40 11 12 0.60 ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65 Consensus pattern (11 bp): TTTTATATATA Left flanking sequence: Indices 33605 -- 34104 CCCAGTAATACACCCTCAAATTTGTGGAGATATACCAACAACAAAAGAAACAGTGGATGAAGACG CTTGTAAACGAGCAGAGGAACCACCAAAAGAACCGGCACCAACAGGACCGAAAAAACCGGCACCA ACAGCAGGTGGTGAGGAAGACCAAACCGAAAAAGACACCGAAGTCAACCCCCTGGCACCGGCCCC TGCGGATGAAACCTTTGACCCGACTATCTTGCAAACAACCATTCCTTTAGGTATTGCGCTGGCAT TAGGATCTATTGCTTTTTTATTTTTGAAGGTAATATATATAGTGGTACTTATGTATATATATATG TGTTTTGTGTATATGTATGTGTGGGTATGTTTGGATATATATATATATATGTTGATGTATATGTG TTTTCTGTATATGTATGTGTTCGTATGTTTGGATATATATTTGTGTATATGTGTTTTGTGGATAT CTATGTGTGCTTACTTTTGGATATATATATGTGTATATGTATGTG Right flanking sequence: Indices 34139 -- 34638 CAAAAAGAAAAAAATGAAAAAAATGAAAAAAAGAAAAAAAGAATATAAAAAAAAAATTTATTACA ACAACAAAAAAAGAGATTTTAATAATAATAAAAATTAAAATAAAAAAATAAATTTTGATAAAATA AAAAATAAAAAATTTTATCAAACAAAAATTAAAAAAAAATTATATTAATAAAAATAATGATTATA AAAAAAATTTATTAGAAATAAAATAAAAAAAAATTTATTACATAAAAAAAAAAAGAAAAAAAAAA AATATATATATATATATATATATATATATATATATATATATATATCATAAAATACAAAAAAAAGG AAAAAAATATTAAAATAAAAATATATATCATAAAAAAAAAAAAAATTAAAAAAATGTTAATAAAA AAATAAATATAAAAAAAAAAAAAAAAATTAAAAAATTTATTTAAATAAAAAAAAATTAAAAAATA TAATTAAATAAAAAAAAATAAAAAAATTTCATTAAATAAAAAAAA Found at i:34249 original size:36 final size:35 Alignment explanation
Indices: 34209--34278 Score: 103 Period size: 36 Copynumber: 2.0 Consensus size: 35 34199 TTACAACAAC * * 34209 AAAAAAAGAGATTTTAATAATAATAAAAATTAAAAT 1 AAAAAAAGAAATTTTAATAA-AATAAAAAATAAAAT * * 34245 AAAAAAATAAATTTTGATAAAATAAAAAATAAAA 1 AAAAAAAGAAATTTTAATAAAATAAAAAATAAAA 34279 AATTTTATCA Statistics Matches: 30, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 35 13 0.43 36 17 0.57 ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26 Consensus pattern (35 bp): AAAAAAAGAAATTTTAATAAAATAAAAAATAAAAT Left flanking sequence: Indices 33709 -- 34208 CAACAGGACCGAAAAAACCGGCACCAACAGCAGGTGGTGAGGAAGACCAAACCGAAAAAGACACC GAAGTCAACCCCCTGGCACCGGCCCCTGCGGATGAAACCTTTGACCCGACTATCTTGCAAACAAC CATTCCTTTAGGTATTGCGCTGGCATTAGGATCTATTGCTTTTTTATTTTTGAAGGTAATATATA TAGTGGTACTTATGTATATATATATGTGTTTTGTGTATATGTATGTGTGGGTATGTTTGGATATA TATATATATATGTTGATGTATATGTGTTTTCTGTATATGTATGTGTTCGTATGTTTGGATATATA TTTGTGTATATGTGTTTTGTGGATATCTATGTGTGCTTACTTTTGGATATATATATGTGTATATG TATGTGTTTTATATATATTTTATATATATGTATTTATATTCAAAAAGAAAAAAATGAAAAAAATG AAAAAAAGAAAAAAAGAATATAAAAAAAAAATTTATTACAACAAC Right flanking sequence: Indices 34279 -- 34778 AATTTTATCAAACAAAAATTAAAAAAAAATTATATTAATAAAAATAATGATTATAAAAAAAATTT ATTAGAAATAAAATAAAAAAAAATTTATTACATAAAAAAAAAAAGAAAAAAAAAAAATATATATA TATATATATATATATATATATATATATATATATATCATAAAATACAAAAAAAAGGAAAAAAATAT TAAAATAAAAATATATATCATAAAAAAAAAAAAAATTAAAAAAATGTTAATAAAAAAATAAATAT AAAAAAAAAAAAAAAAATTAAAAAATTTATTTAAATAAAAAAAAATTAAAAAATATAATTAAATA AAAAAAAATAAAAAAATTTCATTAAATAAAAAAAAATAATAAATAAAAAATTTTAATTAAATAAA AAAAATAAAATAAAATTTAATACATTGACATTTACACATATATATATATATACCCACAACTACAT ACATATTTACACATACATATATATATTATATATATATATACCCAT Found at i:34265 original size:23 final size:24 Alignment explanation
Indices: 34239--34304 Score: 83 Period size: 24 Copynumber: 2.8 Consensus size: 24 34229 TAATAAAAAT * * 34239 TAAAATAAAAAA-ATAAATTTTGA 1 TAAAATAAAAAATAAAAAATTTGA * 34262 TAAAATAAAAAATAAAAAATTTTA 1 TAAAATAAAAAATAAAAAATTTGA * * * 34286 TCAAACAAAAATTAAAAAA 1 TAAAATAAAAAATAAAAAA 34305 AAATTATATT Statistics Matches: 36, Mismatches: 6, Indels: 1 0.84 0.14 0.02 Matches are distributed among these distances: 23 12 0.33 24 24 0.67 ACGTcount: A:0.70, C:0.03, G:0.02, T:0.26 Consensus pattern (24 bp): TAAAATAAAAAATAAAAAATTTGA Left flanking sequence: Indices 33739 -- 34238 CAGGTGGTGAGGAAGACCAAACCGAAAAAGACACCGAAGTCAACCCCCTGGCACCGGCCCCTGCG GATGAAACCTTTGACCCGACTATCTTGCAAACAACCATTCCTTTAGGTATTGCGCTGGCATTAGG ATCTATTGCTTTTTTATTTTTGAAGGTAATATATATAGTGGTACTTATGTATATATATATGTGTT TTGTGTATATGTATGTGTGGGTATGTTTGGATATATATATATATATGTTGATGTATATGTGTTTT CTGTATATGTATGTGTTCGTATGTTTGGATATATATTTGTGTATATGTGTTTTGTGGATATCTAT GTGTGCTTACTTTTGGATATATATATGTGTATATGTATGTGTTTTATATATATTTTATATATATG TATTTATATTCAAAAAGAAAAAAATGAAAAAAATGAAAAAAAGAAAAAAAGAATATAAAAAAAAA ATTTATTACAACAACAAAAAAAGAGATTTTAATAATAATAAAAAT Right flanking sequence: Indices 34305 -- 34804 AAATTATATTAATAAAAATAATGATTATAAAAAAAATTTATTAGAAATAAAATAAAAAAAAATTT ATTACATAAAAAAAAAAAGAAAAAAAAAAAATATATATATATATATATATATATATATATATATA TATATATATCATAAAATACAAAAAAAAGGAAAAAAATATTAAAATAAAAATATATATCATAAAAA AAAAAAAAATTAAAAAAATGTTAATAAAAAAATAAATATAAAAAAAAAAAAAAAAATTAAAAAAT TTATTTAAATAAAAAAAAATTAAAAAATATAATTAAATAAAAAAAAATAAAAAAATTTCATTAAA TAAAAAAAAATAATAAATAAAAAATTTTAATTAAATAAAAAAAATAAAATAAAATTTAATACATT GACATTTACACATATATATATATATACCCACAACTACATACATATTTACACATACATATATATAT TATATATATATATACCCATAACTACCTACATACATACATACATAA Found at i:34308 original size:11 final size:11 Alignment explanation
Indices: 34288--34310 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 34278 AAATTTTATC * 34288 AAACAAAAATT 1 AAAAAAAAATT 34299 AAAAAAAAATT 1 AAAAAAAAATT 34310 A 1 A 34311 TATTAATAAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.78, C:0.04, G:0.00, T:0.17 Consensus pattern (11 bp): AAAAAAAAATT Left flanking sequence: Indices 33788 -- 34287 GGCACCGGCCCCTGCGGATGAAACCTTTGACCCGACTATCTTGCAAACAACCATTCCTTTAGGTA TTGCGCTGGCATTAGGATCTATTGCTTTTTTATTTTTGAAGGTAATATATATAGTGGTACTTATG TATATATATATGTGTTTTGTGTATATGTATGTGTGGGTATGTTTGGATATATATATATATATGTT GATGTATATGTGTTTTCTGTATATGTATGTGTTCGTATGTTTGGATATATATTTGTGTATATGTG TTTTGTGGATATCTATGTGTGCTTACTTTTGGATATATATATGTGTATATGTATGTGTTTTATAT ATATTTTATATATATGTATTTATATTCAAAAAGAAAAAAATGAAAAAAATGAAAAAAAGAAAAAA AGAATATAAAAAAAAAATTTATTACAACAACAAAAAAAGAGATTTTAATAATAATAAAAATTAAA ATAAAAAAATAAATTTTGATAAAATAAAAAATAAAAAATTTTATC Right flanking sequence: Indices 34311 -- 34810 TATTAATAAAAATAATGATTATAAAAAAAATTTATTAGAAATAAAATAAAAAAAAATTTATTACA TAAAAAAAAAAAGAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATA TATCATAAAATACAAAAAAAAGGAAAAAAATATTAAAATAAAAATATATATCATAAAAAAAAAAA AAATTAAAAAAATGTTAATAAAAAAATAAATATAAAAAAAAAAAAAAAAATTAAAAAATTTATTT AAATAAAAAAAAATTAAAAAATATAATTAAATAAAAAAAAATAAAAAAATTTCATTAAATAAAAA AAAATAATAAATAAAAAATTTTAATTAAATAAAAAAAATAAAATAAAATTTAATACATTGACATT TACACATATATATATATATACCCACAACTACATACATATTTACACATACATATATATATTATATA TATATATACCCATAACTACCTACATACATACATACATAAATATAT Found at i:34365 original size:25 final size:26 Alignment explanation
Indices: 34331--34393 Score: 80 Period size: 26 Copynumber: 2.4 Consensus size: 26 34321 AATAATGATT * * 34331 ATAAAAAAAATTTATTAGA-AATAAA 1 ATAAAAAAAATTTATTACATAAAAAA 34356 ATAAAAAAAAATTTATTACATAAAAAA 1 AT-AAAAAAAATTTATTACATAAAAAA * 34383 AAAAAGAAAAA 1 ATAAA-AAAAA 34394 AAAAAAATAT Statistics Matches: 32, Mismatches: 3, Indels: 4 0.82 0.08 0.10 Matches are distributed among these distances: 25 2 0.06 26 19 0.59 27 11 0.34 ACGTcount: A:0.73, C:0.02, G:0.03, T:0.22 Consensus pattern (26 bp): ATAAAAAAAATTTATTACATAAAAAA Left flanking sequence: Indices 33831 -- 34330 CAAACAACCATTCCTTTAGGTATTGCGCTGGCATTAGGATCTATTGCTTTTTTATTTTTGAAGGT AATATATATAGTGGTACTTATGTATATATATATGTGTTTTGTGTATATGTATGTGTGGGTATGTT TGGATATATATATATATATGTTGATGTATATGTGTTTTCTGTATATGTATGTGTTCGTATGTTTG GATATATATTTGTGTATATGTGTTTTGTGGATATCTATGTGTGCTTACTTTTGGATATATATATG TGTATATGTATGTGTTTTATATATATTTTATATATATGTATTTATATTCAAAAAGAAAAAAATGA AAAAAATGAAAAAAAGAAAAAAAGAATATAAAAAAAAAATTTATTACAACAACAAAAAAAGAGAT TTTAATAATAATAAAAATTAAAATAAAAAAATAAATTTTGATAAAATAAAAAATAAAAAATTTTA TCAAACAAAAATTAAAAAAAAATTATATTAATAAAAATAATGATT Right flanking sequence: Indices 34394 -- 34893 AAAAAAATATATATATATATATATATATATATATATATATATATATATATCATAAAATACAAAAA AAAGGAAAAAAATATTAAAATAAAAATATATATCATAAAAAAAAAAAAAATTAAAAAAATGTTAA TAAAAAAATAAATATAAAAAAAAAAAAAAAAATTAAAAAATTTATTTAAATAAAAAAAAATTAAA AAATATAATTAAATAAAAAAAAATAAAAAAATTTCATTAAATAAAAAAAAATAATAAATAAAAAA TTTTAATTAAATAAAAAAAATAAAATAAAATTTAATACATTGACATTTACACATATATATATATA TACCCACAACTACATACATATTTACACATACATATATATATTATATATATATATACCCATAACTA CCTACATACATACATACATAAATATATACATACACATATATGTTCATTTTTTTTTTTAGAAAAAA ACCAAAGCATCTGTTGGAAATTTATTCCAAATACTGCAAATACCC Found at i:34497 original size:48 final size:47 Alignment explanation
Indices: 34436--34579 Score: 193 Period size: 47 Copynumber: 3.0 Consensus size: 47 34426 ATATATATAT * ** 34436 ATATATATCATAAAATACAAAAAAAAGGAAAAAAATATTAAAATAAAA 1 ATATATATCATAAAA-AAAAAAAAAATTAAAAAAATATTAAAATAAAA * * * 34484 ATATATATCATAAAAAAAAAAAAAATTAAAAAAATGTTAATAAAAAA 1 ATATATATCATAAAAAAAAAAAAAATTAAAAAAATATTAAAATAAAA * * * * * 34531 ATAAATATAAAAAAAAAAAAAAAAATTAAAAAATTTATTTAAATAAAA 1 ATATATATCATAAAAAAAAAAAAAATTAAAAAA-ATATTAAAATAAAA 34579 A 1 A 34580 AAAATTAAAA Statistics Matches: 81, Mismatches: 14, Indels: 2 0.84 0.14 0.02 Matches are distributed among these distances: 47 56 0.69 48 25 0.31 ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23 Consensus pattern (47 bp): ATATATATCATAAAAAAAAAAAAAATTAAAAAAATATTAAAATAAAA Left flanking sequence: Indices 33936 -- 34435 GTGTATATGTATGTGTGGGTATGTTTGGATATATATATATATATGTTGATGTATATGTGTTTTCT GTATATGTATGTGTTCGTATGTTTGGATATATATTTGTGTATATGTGTTTTGTGGATATCTATGT GTGCTTACTTTTGGATATATATATGTGTATATGTATGTGTTTTATATATATTTTATATATATGTA TTTATATTCAAAAAGAAAAAAATGAAAAAAATGAAAAAAAGAAAAAAAGAATATAAAAAAAAAAT TTATTACAACAACAAAAAAAGAGATTTTAATAATAATAAAAATTAAAATAAAAAAATAAATTTTG ATAAAATAAAAAATAAAAAATTTTATCAAACAAAAATTAAAAAAAAATTATATTAATAAAAATAA TGATTATAAAAAAAATTTATTAGAAATAAAATAAAAAAAAATTTATTACATAAAAAAAAAAAGAA AAAAAAAAAATATATATATATATATATATATATATATATATATAT Right flanking sequence: Indices 34580 -- 35079 AAAATTAAAAAATATAATTAAATAAAAAAAAATAAAAAAATTTCATTAAATAAAAAAAAATAATA AATAAAAAATTTTAATTAAATAAAAAAAATAAAATAAAATTTAATACATTGACATTTACACATAT ATATATATATACCCACAACTACATACATATTTACACATACATATATATATTATATATATATATAC CCATAACTACCTACATACATACATACATAAATATATACATACACATATATGTTCATTTTTTTTTT TAGAAAAAAACCAAAGCATCTGTTGGAAATTTATTCCAAATACTGCAAATACCCAAAAGTGATTA TGATATACCGACAAAACTTTCACCCAATAGATATATACCTTATACTAGTGGTAAATACAGAGGCA AACGGTACATTTACCTTGAAGGAGATAGTGGAACTGATAGTGGTTACACCGATCATTATAGTGAT ATTACTTCATCTTCCGAAAGTGAGTATGAAGAATTTGATATTAAT Found at i:34765 original size:53 final size:51 Alignment explanation
Indices: 34707--34810 Score: 155 Period size: 53 Copynumber: 2.0 Consensus size: 51 34697 CATTTACACA * * 34707 TATATATATATATACCCACAACTACATACATATTTACACATACATATATATAT 1 TATATATATATATACCCACAACTACATACATA--CACACATACATAAATATAT * * * 34760 TATATATATATATACCCATAACTACCTACATACATACATACATAAATATAT 1 TATATATATATATACCCACAACTACATACATACACACATACATAAATATAT 34811 ACATACACAT Statistics Matches: 46, Mismatches: 5, Indels: 2 0.87 0.09 0.04 Matches are distributed among these distances: 51 16 0.35 53 30 0.65 ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35 Consensus pattern (51 bp): TATATATATATATACCCACAACTACATACATACACACATACATAAATATAT Left flanking sequence: Indices 34207 -- 34706 ACAAAAAAAGAGATTTTAATAATAATAAAAATTAAAATAAAAAAATAAATTTTGATAAAATAAAA AATAAAAAATTTTATCAAACAAAAATTAAAAAAAAATTATATTAATAAAAATAATGATTATAAAA AAAATTTATTAGAAATAAAATAAAAAAAAATTTATTACATAAAAAAAAAAAGAAAAAAAAAAAAT ATATATATATATATATATATATATATATATATATATATATATCATAAAATACAAAAAAAAGGAAA AAAATATTAAAATAAAAATATATATCATAAAAAAAAAAAAAATTAAAAAAATGTTAATAAAAAAA TAAATATAAAAAAAAAAAAAAAAATTAAAAAATTTATTTAAATAAAAAAAAATTAAAAAATATAA TTAAATAAAAAAAAATAAAAAAATTTCATTAAATAAAAAAAAATAATAAATAAAAAATTTTAATT AAATAAAAAAAATAAAATAAAATTTAATACATTGACATTTACACA Right flanking sequence: Indices 34811 -- 35310 ACATACACATATATGTTCATTTTTTTTTTTAGAAAAAAACCAAAGCATCTGTTGGAAATTTATTC CAAATACTGCAAATACCCAAAAGTGATTATGATATACCGACAAAACTTTCACCCAATAGATATAT ACCTTATACTAGTGGTAAATACAGAGGCAAACGGTACATTTACCTTGAAGGAGATAGTGGAACTG ATAGTGGTTACACCGATCATTATAGTGATATTACTTCATCTTCCGAAAGTGAGTATGAAGAATTT GATATTAATGATATATATGTACCAGGTAGTCCTAAATATAAAACATTGATAGAAGTGGTACTAGA ACCTAGTGGTAACAACACAACAGCTAGTGGTAACAACACAACAGCTAGTGGTAACAACACAACAG CTAGTGGTAACAACACAACAGCTAGTGGTAACAACACAACAGCTAGTGATACACAAAATGATATA CAAAATGATGGTATACCTAGTAGTAAAATTACAGATAATGAGTGG Found at i:35164 original size:21 final size:21 Alignment explanation
Indices: 35138--35256 Score: 222 Period size: 21 Copynumber: 5.6 Consensus size: 21 35128 GTACTAGAAC 35138 CTAGTGGTAACAACACAACAG 1 CTAGTGGTAACAACACAACAG 35159 CTAGTGGTAACAACACAACAG 1 CTAGTGGTAACAACACAACAG 35180 CTAGTGGTAACAACACAACAG 1 CTAGTGGTAACAACACAACAG 35201 CTAGTGGTAACAACACAACAG 1 CTAGTGGTAACAACACAACAG 35222 CTAGTGGTAACAACACAACAG 1 CTAGTGGTAACAACACAACAG * 35243 CTAGTGATACACAA 1 CTAGTGGTA-ACAA 35257 AATGATATAC Statistics Matches: 96, Mismatches: 1, Indels: 1 0.98 0.01 0.01 Matches are distributed among these distances: 21 92 0.96 22 4 0.04 ACGTcount: A:0.43, C:0.24, G:0.18, T:0.15 Consensus pattern (21 bp): CTAGTGGTAACAACACAACAG Left flanking sequence: Indices 34638 -- 35137 AATAATAAATAAAAAATTTTAATTAAATAAAAAAAATAAAATAAAATTTAATACATTGACATTTA CACATATATATATATATACCCACAACTACATACATATTTACACATACATATATATATTATATATA TATATACCCATAACTACCTACATACATACATACATAAATATATACATACACATATATGTTCATTT TTTTTTTTAGAAAAAAACCAAAGCATCTGTTGGAAATTTATTCCAAATACTGCAAATACCCAAAA GTGATTATGATATACCGACAAAACTTTCACCCAATAGATATATACCTTATACTAGTGGTAAATAC AGAGGCAAACGGTACATTTACCTTGAAGGAGATAGTGGAACTGATAGTGGTTACACCGATCATTA TAGTGATATTACTTCATCTTCCGAAAGTGAGTATGAAGAATTTGATATTAATGATATATATGTAC CAGGTAGTCCTAAATATAAAACATTGATAGAAGTGGTACTAGAAC Right flanking sequence: Indices 35257 -- 35756 AATGATATACAAAATGATGGTATACCTAGTAGTAAAATTACAGATAATGAGTGGAATACATTGAA AGATGAATTTATATCACAATATCTACAAAGTGAACAACCAAAGGATGTACCAAATGATTATAAAA GTGGAAATAGTTCAACAAATACCAATATTACTACCACGTCACGTGATAATATGGAAGAAAAACCT TTTATTATGTCCATTCATGATAGAGATTTATATAGTGGAGAAGAATATAGTTATAATGTTAATAT GAGTACTAATAGTATGGATGATCCAAAATATGTATCAAATAATGTATATTCTGGTATAGATTTAA TTAATGATTCGTTGAATAGTAATAATGTTGATATTTATGATGAAGTGTTGAAACGAAAAGAAAAC GAATTATTTGGGACAAATCATGTGAAACAAACAAGTATACATAGTGTTGCCAAACTAACAAATAG TGACCCCATCCACAACCAACTAGAACTGTTCCATACATGGCTAGA Found at i:35268 original size:12 final size:12 Alignment explanation
Indices: 35247--35274 Score: 49 Period size: 12 Copynumber: 2.3 Consensus size: 12 35237 CAACAGCTAG 35247 TGATACACAAAA 1 TGATACACAAAA * 35259 TGATATACAAAA 1 TGATACACAAAA 35271 TGAT 1 TGAT 35275 GGTATACCTA Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.54, C:0.11, G:0.11, T:0.25 Consensus pattern (12 bp): TGATACACAAAA Left flanking sequence: Indices 34747 -- 35246 TACATATATATATTATATATATATATACCCATAACTACCTACATACATACATACATAAATATATA CATACACATATATGTTCATTTTTTTTTTTAGAAAAAAACCAAAGCATCTGTTGGAAATTTATTCC AAATACTGCAAATACCCAAAAGTGATTATGATATACCGACAAAACTTTCACCCAATAGATATATA CCTTATACTAGTGGTAAATACAGAGGCAAACGGTACATTTACCTTGAAGGAGATAGTGGAACTGA TAGTGGTTACACCGATCATTATAGTGATATTACTTCATCTTCCGAAAGTGAGTATGAAGAATTTG ATATTAATGATATATATGTACCAGGTAGTCCTAAATATAAAACATTGATAGAAGTGGTACTAGAA CCTAGTGGTAACAACACAACAGCTAGTGGTAACAACACAACAGCTAGTGGTAACAACACAACAGC TAGTGGTAACAACACAACAGCTAGTGGTAACAACACAACAGCTAG Right flanking sequence: Indices 35275 -- 35774 GGTATACCTAGTAGTAAAATTACAGATAATGAGTGGAATACATTGAAAGATGAATTTATATCACA ATATCTACAAAGTGAACAACCAAAGGATGTACCAAATGATTATAAAAGTGGAAATAGTTCAACAA ATACCAATATTACTACCACGTCACGTGATAATATGGAAGAAAAACCTTTTATTATGTCCATTCAT GATAGAGATTTATATAGTGGAGAAGAATATAGTTATAATGTTAATATGAGTACTAATAGTATGGA TGATCCAAAATATGTATCAAATAATGTATATTCTGGTATAGATTTAATTAATGATTCGTTGAATA GTAATAATGTTGATATTTATGATGAAGTGTTGAAACGAAAAGAAAACGAATTATTTGGGACAAAT CATGTGAAACAAACAAGTATACATAGTGTTGCCAAACTAACAAATAGTGACCCCATCCACAACCA ACTAGAACTGTTCCATACATGGCTAGATAGACATAGAGATATGTG Found at i:36367 original size:20 final size:19 Alignment explanation
Indices: 36319--36368 Score: 63 Period size: 18 Copynumber: 2.6 Consensus size: 19 36309 GTTCATGTTA 36319 TATTATATTTTTTGTTTGTG 1 TATT-TATTTTTTGTTTGTG * * 36339 TATTT-TTTTTTTTTTTTG 1 TATTTATTTTTTGTTTGTG * 36357 TATTTAATTTTT 1 TATTTATTTTTT 36369 AGTGTTACAA Statistics Matches: 26, Mismatches: 3, Indels: 3 0.81 0.09 0.09 Matches are distributed among these distances: 18 16 0.62 19 6 0.23 20 4 0.15 ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78 Consensus pattern (19 bp): TATTTATTTTTTGTTTGTG Left flanking sequence: Indices 35819 -- 36318 AAGAGTGGGAAAATGATACATCAACTAGTGGTAACACTCACCCTAGTGATAGTAACAAAACGTTG AATACTGATGTTTCTATTCAAATACATATGGATAATCCTAAACCTATAAATCAATTTAATAATAT GGATACTATCTTGGAAGATCTGGACAAACCATTTAATGAACCCTACTATTATGATATGTATGACG ATGATATTTATTATGATGTAAATGATGATAATGATACATCAACTGTGGATAGTAATAATATGGAT GTACCTAGTAAAGTACAAATTGAAATGGATGTAAATACTAAATTGGTGAAAGAGAAATATCCTAT ATCGGATGTATGGGATATATAATATATACGTATGAATGTATATTTGTTTGATTTTTTTTTTATGT GTGCATTATATTATATTTTTTATTTGTTGATGTTATATTATATTTGATTTGTGTATTATATTATA TTTTATATTTGTGTATTATGTTATATTTTTTAATTGTTCATGTTA Right flanking sequence: Indices 36369 -- 36868 AGTGTTACAAATTATATTATATATATGTACATATATATATCATAATTATATTGTATTATATATAT ATATTTAATATGATAACAATAATAGTTAAAATTATTTAAATTAAAAAATATAAACTATTGGAAAC GCATTGAATATAATAATATATTACTATTTGCATTATTGTAATTAATACTGCAATTAATATAGTAA TATTATTAGAAGTAGTAATTAACAGTATAACTATTAATTTTATTAGTGATAACAGTACTTTAAAA ATTTAATATTTTTATTTTTTATTTTATAATTTTTACTTTTTATTATATTAAAAAAAAAAAAAAAA AAATATATATATATATAAAAATTATTATTATAATTTTTTTTTCCTAAATGTGTTTACATATAAAA TAATAAAAAAAAAAAAAAAAAAAAAGAAAAATTTGAAATATATCATATAAATTTCATATATATAA AAAATAACAAAAAAAAAAAAAAAAAAAAAATTTTAAATATATCAT Found at i:36654 original size:21 final size:21 Alignment explanation
Indices: 36630--36672 Score: 65 Period size: 21 Copynumber: 2.0 Consensus size: 21 36620 ACTTTAAAAA * * 36630 TTTAATATTTTTATTTTTTAT 1 TTTAAAATTTTTACTTTTTAT * 36651 TTTATAATTTTTACTTTTTAT 1 TTTAAAATTTTTACTTTTTAT 36672 T 1 T 36673 ATATTAAAAA Statistics Matches: 19, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 21 19 1.00 ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74 Consensus pattern (21 bp): TTTAAAATTTTTACTTTTTAT Left flanking sequence: Indices 36130 -- 36629 GAGAAATATCCTATATCGGATGTATGGGATATATAATATATACGTATGAATGTATATTTGTTTGA TTTTTTTTTTATGTGTGCATTATATTATATTTTTTATTTGTTGATGTTATATTATATTTGATTTG TGTATTATATTATATTTTATATTTGTGTATTATGTTATATTTTTTAATTGTTCATGTTATATTAT ATTTTTTGTTTGTGTATTTTTTTTTTTTTTTGTATTTAATTTTTAGTGTTACAAATTATATTATA TATATGTACATATATATATCATAATTATATTGTATTATATATATATATTTAATATGATAACAATA ATAGTTAAAATTATTTAAATTAAAAAATATAAACTATTGGAAACGCATTGAATATAATAATATAT TACTATTTGCATTATTGTAATTAATACTGCAATTAATATAGTAATATTATTAGAAGTAGTAATTA ACAGTATAACTATTAATTTTATTAGTGATAACAGTACTTTAAAAA Right flanking sequence: Indices 36673 -- 37172 ATATTAAAAAAAAAAAAAAAAAAATATATATATATATAAAAATTATTATTATAATTTTTTTTTCC TAAATGTGTTTACATATAAAATAATAAAAAAAAAAAAAAAAAAAAAGAAAAATTTGAAATATATC ATATAAATTTCATATATATAAAAAATAACAAAAAAAAAAAAAAAAAAAAAATTTTAAATATATCA TACAACTTTCATATATATAAAAAATAACAAAAAAAAAAAAAAAAAAAAAAAAATATATAAATATA AATATAAACAAAAATGGAAAACATTTTACAGAAGAAAAAATATTTAATAAACAAATTTTTTTTTT TTTTTTCTTTTTTTGCCACTTAATATATATAAAAATATAATGATAATAAATCAATGCATACCGTA ATATAGAAACAAATAACACTTAAAAAAAAATTAAAAAGAACAATATAAATTATGAAATATATATG AAATTATATCTCATAAATATATACATATTATCAAATAAATATATA Found at i:36862 original size:64 final size:64 Alignment explanation
Indices: 36751--36917 Score: 279 Period size: 64 Copynumber: 2.6 Consensus size: 64 36741 ATGTGTTTAC * * 36751 ATATAAAATAATAAAAAAAAAAAAAAAAAAAAAGAAAAATTTGAAATATATCATATAAATTTCAT 1 ATATAAAA-AAT-AACAAAAAAAAAAAAAAAAA-AAAAATTTGAAATATATCATACAAATTTCAT 36816 AT 63 AT * * 36818 ATATAAAAAATAACAAAAAAAAAAAAAAAAAAAAAATTTTAAATATATCATACAACTTTCATAT 1 ATATAAAAAATAACAAAAAAAAAAAAAAAAAAAAAATTTGAAATATATCATACAAATTTCATAT 36882 ATATAAAAAATAACAAAAAAAAAAAAAAAAAAAAAA 1 ATATAAAAAATAACAAAAAAAAAAAAAAAAAAAAAA 36918 AAATATATAA Statistics Matches: 96, Mismatches: 4, Indels: 3 0.93 0.04 0.03 Matches are distributed among these distances: 64 66 0.69 65 19 0.20 66 3 0.03 67 8 0.08 ACGTcount: A:0.72, C:0.05, G:0.01, T:0.22 Consensus pattern (64 bp): ATATAAAAAATAACAAAAAAAAAAAAAAAAAAAAAATTTGAAATATATCATACAAATTTCATAT Left flanking sequence: Indices 36251 -- 36750 TTTGATTTGTGTATTATATTATATTTTATATTTGTGTATTATGTTATATTTTTTAATTGTTCATG TTATATTATATTTTTTGTTTGTGTATTTTTTTTTTTTTTTGTATTTAATTTTTAGTGTTACAAAT TATATTATATATATGTACATATATATATCATAATTATATTGTATTATATATATATATTTAATATG ATAACAATAATAGTTAAAATTATTTAAATTAAAAAATATAAACTATTGGAAACGCATTGAATATA ATAATATATTACTATTTGCATTATTGTAATTAATACTGCAATTAATATAGTAATATTATTAGAAG TAGTAATTAACAGTATAACTATTAATTTTATTAGTGATAACAGTACTTTAAAAATTTAATATTTT TATTTTTTATTTTATAATTTTTACTTTTTATTATATTAAAAAAAAAAAAAAAAAAATATATATAT ATATAAAAATTATTATTATAATTTTTTTTTCCTAAATGTGTTTAC Right flanking sequence: Indices 36918 -- 37417 AAATATATAAATATAAATATAAACAAAAATGGAAAACATTTTACAGAAGAAAAAATATTTAATAA ACAAATTTTTTTTTTTTTTTTCTTTTTTTGCCACTTAATATATATAAAAATATAATGATAATAAA TCAATGCATACCGTAATATAGAAACAAATAACACTTAAAAAAAAATTAAAAAGAACAATATAAAT TATGAAATATATATGAAATTATATCTCATAAATATATACATATTATCAAATAAATATATATATAT ATAAACAAAAAATATCTACATATTATACTAAATAAAACAACATAATAAAAATTACAAAGGCAAAA TAAAGAAAAAGTGTATTATTATATTAAAATAAAAAATATACATTATTCTTTTTTTTATTGTGTTT TATTTTTATTAATTTGATTTGTTTTTTGTGTTTTTATTGGTTTTTTATGTATTGTATCTATTTGT TATATTACGTGTAATTATTATATTTTGTTATATGTTGACTATTTT Found at i:37467 original size:13 final size:13 Alignment explanation
Indices: 37445--37475 Score: 48 Period size: 13 Copynumber: 2.4 Consensus size: 13 37435 GTAGTATTTC * 37445 TAATAAAAAATAA 1 TAAAAAAAAATAA * 37458 TTAAAAAAAATAA 1 TAAAAAAAAATAA 37471 TAAAA 1 TAAAA 37476 TATATTATGA Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (13 bp): TAAAAAAAAATAA Left flanking sequence: Indices 36945 -- 37444 AATGGAAAACATTTTACAGAAGAAAAAATATTTAATAAACAAATTTTTTTTTTTTTTTTCTTTTT TTGCCACTTAATATATATAAAAATATAATGATAATAAATCAATGCATACCGTAATATAGAAACAA ATAACACTTAAAAAAAAATTAAAAAGAACAATATAAATTATGAAATATATATGAAATTATATCTC ATAAATATATACATATTATCAAATAAATATATATATATATAAACAAAAAATATCTACATATTATA CTAAATAAAACAACATAATAAAAATTACAAAGGCAAAATAAAGAAAAAGTGTATTATTATATTAA AATAAAAAATATACATTATTCTTTTTTTTATTGTGTTTTATTTTTATTAATTTGATTTGTTTTTT GTGTTTTTATTGGTTTTTTATGTATTGTATCTATTTGTTATATTACGTGTAATTATTATATTTTG TTATATGTTGACTATTTTTTGAATTCATTGTATTAGTAGTATTTC Right flanking sequence: Indices 37476 -- 37975 TATATTATGAAATAAATATAAATAACATAATATATAATATGATAGGTTTTTTAAGGATGATAATT CTGAATTGAAATAATATACTTATTGGTTTTAATTTTAATTATATAAATATAGATATAATATTTTG AATAATATGTTTCTTAAAATATTTATAATAATAGTAATCATAATAATCATAATCATAATAATCAT AATTATAATAATAATAAGTTTTATTGTTTTTTTTTTTGATATATATTCCTTTGAAAAACATATGA GGTATTTAAAAAATATACGTTACATTATGTTTTAAAAAAATAATATATTATAATACGTATAAGTA TTTTATATAAATTAAAAATTACATTGTTTATTAATTAAAAGAGTTTTAGAAAATAAATAAATAAA TAAATAAATAAATAAATAAATAAAATTATAGAAAAATAAATTATATATAAAAGCGCAATACATAT AAAAATATATAGTTATTTATAATGGAGAAAAAAAAAAAAAAAACA Found at i:37650 original size:15 final size:15 Alignment explanation
Indices: 37630--37687 Score: 88 Period size: 15 Copynumber: 3.9 Consensus size: 15 37620 TAAAATATTT * 37630 ATAATAATAGTAATC 1 ATAATAATAATAATC * 37645 ATAATAATCATAATC 1 ATAATAATAATAATC * * 37660 ATAATAATCATAATT 1 ATAATAATAATAATC 37675 ATAATAATAATAA 1 ATAATAATAATAA 37688 GTTTTATTGT Statistics Matches: 39, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 15 39 1.00 ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34 Consensus pattern (15 bp): ATAATAATAATAATC Left flanking sequence: Indices 37130 -- 37629 ATTATATCTCATAAATATATACATATTATCAAATAAATATATATATATATAAACAAAAAATATCT ACATATTATACTAAATAAAACAACATAATAAAAATTACAAAGGCAAAATAAAGAAAAAGTGTATT ATTATATTAAAATAAAAAATATACATTATTCTTTTTTTTATTGTGTTTTATTTTTATTAATTTGA TTTGTTTTTTGTGTTTTTATTGGTTTTTTATGTATTGTATCTATTTGTTATATTACGTGTAATTA TTATATTTTGTTATATGTTGACTATTTTTTGAATTCATTGTATTAGTAGTATTTCTAATAAAAAA TAATTAAAAAAAATAATAAAATATATTATGAAATAAATATAAATAACATAATATATAATATGATA GGTTTTTTAAGGATGATAATTCTGAATTGAAATAATATACTTATTGGTTTTAATTTTAATTATAT AAATATAGATATAATATTTTGAATAATATGTTTCTTAAAATATTT Right flanking sequence: Indices 37688 -- 38187 GTTTTATTGTTTTTTTTTTTGATATATATTCCTTTGAAAAACATATGAGGTATTTAAAAAATATA CGTTACATTATGTTTTAAAAAAATAATATATTATAATACGTATAAGTATTTTATATAAATTAAAA ATTACATTGTTTATTAATTAAAAGAGTTTTAGAAAATAAATAAATAAATAAATAAATAAATAAAT AAATAAAATTATAGAAAAATAAATTATATATAAAAGCGCAATACATATAAAAATATATAGTTATT TATAATGGAGAAAAAAAAAAAAAAAACACACGGTACATTCAAAGAAAAATACTACGTGTACCATA CATCCTACCAACATCGAAAAATACCAAATACATCACATCTATTCTTCTAATAATTTGATATATTG GAGTTTTTTCTTCATTTTTTTTTTTCGTCGATAACGTAAAATTAAATAAATAATTATCATAACCA AAACTATAACTACAATTGCAGCAATGGAAACAATAATAGCAGTCT Found at