TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 102845780 P. falciparum 3D7 GENOMIC chr6 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1418244 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Found at i: i:640941 original size:5 final size:5 Alignment explanation
Indices: 640927--640943 Score: 27 Period size: 5 Copynumber: 3.4 Consensus size: 5 640917 GATATTATTA * 640927 ATTAT ATTTT ATTTT AT 1 ATTTT ATTTT ATTTT AT 640944 AAGATATATT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (5 bp): ATTTT Left flanking sequence: Indices 640427 -- 640926 CTAACACCCGGAATACATAATTATACATACATATTATATATTATATATATATATATATATATATA TATATATTTATTTATTTATTTATTTATTTACATATATTCCTATTTGTATCTTTTTAAATTATATA AGAACATTTTATTATATATATATATATATATATCCCTTATTTGTTTCTTTTCTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTGTACAATTTTTATAAAAGTATTTCAAAAACGTTATTTTCAT CCATTTTGCTTTTTTTTTTTGTTTTTTTAAATCTTTAATTAAAATTTTGTATAAATTTTTATTAT ATCATATTGTCAAGAAGAAAATATATATATTTTGTTTTTTTTAATTAAATCGTTACAAATATATA TATAAATATATATATATATATATAATATATATGTTAAAAAAATATAATATATATTTACATATATA AAATATATTTATAATTTTTTATTTATTTCAAAATAGATATTATTA Right flanking sequence: Indices 640944 -- 641443 AAGATATATTTTTTTTTTTATGATAATCATAAATATTATATTATTTATTATAATTAATTTTTTTT ATTTTTTATTTTTTTAATAGAGACTCTCATATTTTAATATGATATATGCTGAATAATATGAAAAT ATGGTCATATGATAATATATATATATATAAAAAAATATATATATATATAATATATATATTTATAA TTTATATTTATATATATATATTTCTCTTTGAAATAAATGAAAATATTAAAAAATAAAATATAAAA AATAATAAATATGTATATATATGTATGTACTTTTTATTTCTCTCTCCTTTTTTCTTTTTCTTTTT CTTTTTCTTTTTCTTTTCCTTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTCCTTTTACTTT TTCTTTTCCGGCGTACAGACTTAGTAGTACATGAGAAGATATATATATATATATATCTATTTTTA TTTTATTTTATTTTATTTTATCATAATAAAGTACAAAGATGCAAA i:640986 original size:5 final size:5 Alignment explanation
Indices: 640976--640991 Score: 25 Period size: 5 Copynumber: 3.4 Consensus size: 5 640966 ATAATCATAA 640976 ATATT ATATT AT-TT AT 1 ATATT ATATT ATATT AT 640992 TATAATTAAT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 4 4 0.36 5 7 0.64 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (5 bp): ATATT Left flanking sequence: Indices 640476 -- 640975 TATATATATATATATATATATATTTATTTATTTATTTATTTATTTACATATATTCCTATTTGTAT CTTTTTAAATTATATAAGAACATTTTATTATATATATATATATATATATCCCTTATTTGTTTCTT TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACAATTTTTATAAAAGTATTTCA AAAACGTTATTTTCATCCATTTTGCTTTTTTTTTTTGTTTTTTTAAATCTTTAATTAAAATTTTG TATAAATTTTTATTATATCATATTGTCAAGAAGAAAATATATATATTTTGTTTTTTTTAATTAAA TCGTTACAAATATATATATAAATATATATATATATATATAATATATATGTTAAAAAAATATAATA TATATTTACATATATAAAATATATTTATAATTTTTTATTTATTTCAAAATAGATATTATTAATTA TATTTTATTTTATAAGATATATTTTTTTTTTTATGATAATCATAA Right flanking sequence: Indices 640992 -- 641491 TATAATTAATTTTTTTTATTTTTTATTTTTTTAATAGAGACTCTCATATTTTAATATGATATATG CTGAATAATATGAAAATATGGTCATATGATAATATATATATATATAAAAAAATATATATATATAT AATATATATATTTATAATTTATATTTATATATATATATTTCTCTTTGAAATAAATGAAAATATTA AAAAATAAAATATAAAAAATAATAAATATGTATATATATGTATGTACTTTTTATTTCTCTCTCCT TTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTCCTTTTTACTTTTCCTTTTACTTTTCCTTTT ACTTTTCCTTTTACTTTTTCTTTTCCGGCGTACAGACTTAGTAGTACATGAGAAGATATATATAT ATATATATCTATTTTTATTTTATTTTATTTTATTTTATCATAATAAAGTACAAAGATGCAAATAA TAAAAAAAAAAAAAATTGTAATAATAATAAATCGTTCTATGACAA Found at i:641379 original size:2 final size:2 Alignment explanation
Indices: 641372--641393 Score: 37 Period size: 2 Copynumber: 11.0 Consensus size: 2 641362 ACATGAGAAG * 641372 AT AT AT AT AT AT AT AT AT CT AT 1 AT AT AT AT AT AT AT AT AT AT AT 641394 TTTTATTTTA Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 2 18 1.00 ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 640872 -- 641371 TACATATATAAAATATATTTATAATTTTTTATTTATTTCAAAATAGATATTATTAATTATATTTT ATTTTATAAGATATATTTTTTTTTTTATGATAATCATAAATATTATATTATTTATTATAATTAAT TTTTTTTATTTTTTATTTTTTTAATAGAGACTCTCATATTTTAATATGATATATGCTGAATAATA TGAAAATATGGTCATATGATAATATATATATATATAAAAAAATATATATATATATAATATATATA TTTATAATTTATATTTATATATATATATTTCTCTTTGAAATAAATGAAAATATTAAAAAATAAAA TATAAAAAATAATAAATATGTATATATATGTATGTACTTTTTATTTCTCTCTCCTTTTTTCTTTT TCTTTTTCTTTTTCTTTTTCTTTTCCTTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTCCTT TTACTTTTTCTTTTCCGGCGTACAGACTTAGTAGTACATGAGAAG Right flanking sequence: Indices 641394 -- 641893 TTTTATTTTATTTTATTTTATTTTATCATAATAAAGTACAAAGATGCAAATAATAAAAAAAAAAA AAATTGTAATAATAATAAATCGTTCTATGACAACATTTATTGTAACAGTCTCATATATTAAAATG TAATATATATATTATGTATATCTTATTATTTTTTATTTATTATTATTTTATTTATTTTTTATTTT TTTATTTTTTTATATTTTTTTTTCTTTCTTATTTCTGTTTTTATGACTTGTTTTTTCGTTTATTA AGAAATCTAATTAAAAGTGTGTACTTTTAAAACAAAATAATAAGATATCATATGTATATATATAT ATATATATATATATATATATTTATATTTATATATTTATATTTATATATGTCTATTTTGTTTTGTT TTATAAATATTAAGAAAATATGAACTAAGACACCAAGCATATATTGTTATATCTTATATATGATA GTATATAAGTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT Found at i:641404 original size:5 final size:5 Alignment explanation
Indices: 641394--641419 Score: 52 Period size: 5 Copynumber: 5.2 Consensus size: 5 641384 ATATATCTAT 641394 TTTTA TTTTA TTTTA TTTTA TTTTA T 1 TTTTA TTTTA TTTTA TTTTA TTTTA T 641420 CATAATAAAG Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 21 1.00 ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81 Consensus pattern (5 bp): TTTTA Left flanking sequence: Indices 640894 -- 641393 AATTTTTTATTTATTTCAAAATAGATATTATTAATTATATTTTATTTTATAAGATATATTTTTTT TTTTATGATAATCATAAATATTATATTATTTATTATAATTAATTTTTTTTATTTTTTATTTTTTT AATAGAGACTCTCATATTTTAATATGATATATGCTGAATAATATGAAAATATGGTCATATGATAA TATATATATATATAAAAAAATATATATATATATAATATATATATTTATAATTTATATTTATATAT ATATATTTCTCTTTGAAATAAATGAAAATATTAAAAAATAAAATATAAAAAATAATAAATATGTA TATATATGTATGTACTTTTTATTTCTCTCTCCTTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTT TTCCTTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTTCTTTTCCGGCGTA CAGACTTAGTAGTACATGAGAAGATATATATATATATATATCTAT Right flanking sequence: Indices 641420 -- 641919 CATAATAAAGTACAAAGATGCAAATAATAAAAAAAAAAAAAATTGTAATAATAATAAATCGTTCT ATGACAACATTTATTGTAACAGTCTCATATATTAAAATGTAATATATATATTATGTATATCTTAT TATTTTTTATTTATTATTATTTTATTTATTTTTTATTTTTTTATTTTTTTATATTTTTTTTTCTT TCTTATTTCTGTTTTTATGACTTGTTTTTTCGTTTATTAAGAAATCTAATTAAAAGTGTGTACTT TTAAAACAAAATAATAAGATATCATATGTATATATATATATATATATATATATATATATTTATAT TTATATATTTATATTTATATATGTCTATTTTGTTTTGTTTTATAAATATTAAGAAAATATGAACT AAGACACCAAGCATATATTGTTATATCTTATATATGATAGTATATAAGTTGTTGGTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTCTCACATCATGTTCTTTTA Found at i:641454 original size:1 final size:1 Alignment explanation
Indices: 641448--641461 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 641438 TGCAAATAAT 641448 AAAAAAAAAAAAAA 1 AAAAAAAAAAAAAA 641462 TTGTAATAAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 640948 -- 641447 TATATTTTTTTTTTTATGATAATCATAAATATTATATTATTTATTATAATTAATTTTTTTTATTT TTTATTTTTTTAATAGAGACTCTCATATTTTAATATGATATATGCTGAATAATATGAAAATATGG TCATATGATAATATATATATATATAAAAAAATATATATATATATAATATATATATTTATAATTTA TATTTATATATATATATTTCTCTTTGAAATAAATGAAAATATTAAAAAATAAAATATAAAAAATA ATAAATATGTATATATATGTATGTACTTTTTATTTCTCTCTCCTTTTTTCTTTTTCTTTTTCTTT TTCTTTTTCTTTTCCTTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTTCT TTTCCGGCGTACAGACTTAGTAGTACATGAGAAGATATATATATATATATATCTATTTTTATTTT ATTTTATTTTATTTTATCATAATAAAGTACAAAGATGCAAATAAT Right flanking sequence: Indices 641462 -- 641961 TTGTAATAATAATAAATCGTTCTATGACAACATTTATTGTAACAGTCTCATATATTAAAATGTAA TATATATATTATGTATATCTTATTATTTTTTATTTATTATTATTTTATTTATTTTTTATTTTTTT ATTTTTTTATATTTTTTTTTCTTTCTTATTTCTGTTTTTATGACTTGTTTTTTCGTTTATTAAGA AATCTAATTAAAAGTGTGTACTTTTAAAACAAAATAATAAGATATCATATGTATATATATATATA TATATATATATATATATTTATATTTATATATTTATATTTATATATGTCTATTTTGTTTTGTTTTA TAAATATTAAGAAAATATGAACTAAGACACCAAGCATATATTGTTATATCTTATATATGATAGTA TATAAGTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCACATCATGTTCTT TTAAAAGGTATATATATATATATATATATATATATATATATTTCC Found at i:641725 original size:14 final size:14 Alignment explanation
Indices: 641698--641766 Score: 94 Period size: 14 Copynumber: 4.9 Consensus size: 14 641688 AAATAATAAG * 641698 ATATCATATGTATAT 1 ATAT-ATATATATAT 641713 ATATATATATATAT 1 ATATATATATATAT * 641727 ATATATATATATTT 1 ATATATATATATAT * * 641741 ATATTTATATATTT 1 ATATATATATATAT * 641755 ATATTTATATAT 1 ATATATATATAT 641767 GTCTATTTTG Statistics Matches: 51, Mismatches: 3, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 14 47 0.92 15 4 0.08 ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55 Consensus pattern (14 bp): ATATATATATATAT Left flanking sequence: Indices 641198 -- 641697 ATAAAAAATAATAAATATGTATATATATGTATGTACTTTTTATTTCTCTCTCCTTTTTTCTTTTT CTTTTTCTTTTTCTTTTTCTTTTCCTTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTCCTTT TACTTTTTCTTTTCCGGCGTACAGACTTAGTAGTACATGAGAAGATATATATATATATATATCTA TTTTTATTTTATTTTATTTTATTTTATCATAATAAAGTACAAAGATGCAAATAATAAAAAAAAAA AAAATTGTAATAATAATAAATCGTTCTATGACAACATTTATTGTAACAGTCTCATATATTAAAAT GTAATATATATATTATGTATATCTTATTATTTTTTATTTATTATTATTTTATTTATTTTTTATTT TTTTATTTTTTTATATTTTTTTTTCTTTCTTATTTCTGTTTTTATGACTTGTTTTTTCGTTTATT AAGAAATCTAATTAAAAGTGTGTACTTTTAAAACAAAATAATAAG Right flanking sequence: Indices 641767 -- 642266 GTCTATTTTGTTTTGTTTTATAAATATTAAGAAAATATGAACTAAGACACCAAGCATATATTGTT ATATCTTATATATGATAGTATATAAGTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTCTCACATCATGTTCTTTTAAAAGGTATATATATATATATATATATATATATATATATTTCC GTATGAACATGGGATAATATAAAGGATAATCAAAAATATATAAAACTATTGTACCAATATATATA TATATATATATATATATATATATATATATATAATATATTTTATTTTATTTTTATTTATTTATTTG GTTCTTTGTTTGTTTAGGGTTATCTAATAATACGTTAGTCCTTTGATATACATATAATTATACAG CATATCCATTTTTAATGCTTTAAAATTTAATGCAATTTTAATACGATTTCTTAAAATTAGAAATA AATTTGGGGGTTTGTCAAAATTATAACTATGACAATTTTATTTAT Found at i:641782 original size:5 final size:5 Alignment explanation
Indices: 641772--641785 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 641762 TATATGTCTA 641772 TTTTG TTTTG TTTT 1 TTTTG TTTTG TTTT 641786 ATAAATATTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86 Consensus pattern (5 bp): TTTTG Left flanking sequence: Indices 641272 -- 641771 TTTCTTTTTCTTTTCCTTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTCCTTTTACTTTTTC TTTTCCGGCGTACAGACTTAGTAGTACATGAGAAGATATATATATATATATATCTATTTTTATTT TATTTTATTTTATTTTATCATAATAAAGTACAAAGATGCAAATAATAAAAAAAAAAAAAATTGTA ATAATAATAAATCGTTCTATGACAACATTTATTGTAACAGTCTCATATATTAAAATGTAATATAT ATATTATGTATATCTTATTATTTTTTATTTATTATTATTTTATTTATTTTTTATTTTTTTATTTT TTTATATTTTTTTTTCTTTCTTATTTCTGTTTTTATGACTTGTTTTTTCGTTTATTAAGAAATCT AATTAAAAGTGTGTACTTTTAAAACAAAATAATAAGATATCATATGTATATATATATATATATAT ATATATATATATTTATATTTATATATTTATATTTATATATGTCTA Right flanking sequence: Indices 641786 -- 642285 ATAAATATTAAGAAAATATGAACTAAGACACCAAGCATATATTGTTATATCTTATATATGATAGT ATATAAGTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCACATCATGTTCT TTTAAAAGGTATATATATATATATATATATATATATATATATTTCCGTATGAACATGGGATAATA TAAAGGATAATCAAAAATATATAAAACTATTGTACCAATATATATATATATATATATATATATAT ATATATATATATAATATATTTTATTTTATTTTTATTTATTTATTTGGTTCTTTGTTTGTTTAGGG TTATCTAATAATACGTTAGTCCTTTGATATACATATAATTATACAGCATATCCATTTTTAATGCT TTAAAATTTAATGCAATTTTAATACGATTTCTTAAAATTAGAAATAAATTTGGGGGTTTGTCAAA ATTATAACTATGACAATTTTATTTATTCATTTTATATTTTTACTC Found at i:641871 original size:1 final size:1 Alignment explanation
Indices: 641865--641900 Score: 72 Period size: 1 Copynumber: 36.0 Consensus size: 1 641855 AAGTTGTTGG 641865 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 641901 CTCACATCAT Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 35 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 641365 -- 641864 TGAGAAGATATATATATATATATATCTATTTTTATTTTATTTTATTTTATTTTATCATAATAAAG TACAAAGATGCAAATAATAAAAAAAAAAAAAATTGTAATAATAATAAATCGTTCTATGACAACAT TTATTGTAACAGTCTCATATATTAAAATGTAATATATATATTATGTATATCTTATTATTTTTTAT TTATTATTATTTTATTTATTTTTTATTTTTTTATTTTTTTATATTTTTTTTTCTTTCTTATTTCT GTTTTTATGACTTGTTTTTTCGTTTATTAAGAAATCTAATTAAAAGTGTGTACTTTTAAAACAAA ATAATAAGATATCATATGTATATATATATATATATATATATATATATATTTATATTTATATATTT ATATTTATATATGTCTATTTTGTTTTGTTTTATAAATATTAAGAAAATATGAACTAAGACACCAA GCATATATTGTTATATCTTATATATGATAGTATATAAGTTGTTGG Right flanking sequence: Indices 641901 -- 642400 CTCACATCATGTTCTTTTAAAAGGTATATATATATATATATATATATATATATATATTTCCGTAT GAACATGGGATAATATAAAGGATAATCAAAAATATATAAAACTATTGTACCAATATATATATATA TATATATATATATATATATATATATATAATATATTTTATTTTATTTTTATTTATTTATTTGGTTC TTTGTTTGTTTAGGGTTATCTAATAATACGTTAGTCCTTTGATATACATATAATTATACAGCATA TCCATTTTTAATGCTTTAAAATTTAATGCAATTTTAATACGATTTCTTAAAATTAGAAATAAATT TGGGGGTTTGTCAAAATTATAACTATGACAATTTTATTTATTCATTTTATATTTTTACTCAAAGA TATTATATATATATATATATATATATATATGTATATTTTTTTTTTTTTTTTTTTTTTATTATTTA TTTATTTTCTATTGCACTAGTACAAATAAGAATGGTTAATAAAAT Found at i:641932 original size:2 final size:2 Alignment explanation
Indices: 641925--641957 Score: 66 Period size: 2 Copynumber: 16.5 Consensus size: 2 641915 TTTTAAAAGG 641925 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 641958 TTCCGTATGA Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 31 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Left flanking sequence: Indices 641425 -- 641924 TAAAGTACAAAGATGCAAATAATAAAAAAAAAAAAAATTGTAATAATAATAAATCGTTCTATGAC AACATTTATTGTAACAGTCTCATATATTAAAATGTAATATATATATTATGTATATCTTATTATTT TTTATTTATTATTATTTTATTTATTTTTTATTTTTTTATTTTTTTATATTTTTTTTTCTTTCTTA TTTCTGTTTTTATGACTTGTTTTTTCGTTTATTAAGAAATCTAATTAAAAGTGTGTACTTTTAAA ACAAAATAATAAGATATCATATGTATATATATATATATATATATATATATATATTTATATTTATA TATTTATATTTATATATGTCTATTTTGTTTTGTTTTATAAATATTAAGAAAATATGAACTAAGAC ACCAAGCATATATTGTTATATCTTATATATGATAGTATATAAGTTGTTGGTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTCTCACATCATGTTCTTTTAAAAGG Right flanking sequence: Indices 641958 -- 642457 TTCCGTATGAACATGGGATAATATAAAGGATAATCAAAAATATATAAAACTATTGTACCAATATA TATATATATATATATATATATATATATATATATATAATATATTTTATTTTATTTTTATTTATTTA TTTGGTTCTTTGTTTGTTTAGGGTTATCTAATAATACGTTAGTCCTTTGATATACATATAATTAT ACAGCATATCCATTTTTAATGCTTTAAAATTTAATGCAATTTTAATACGATTTCTTAAAATTAGA AATAAATTTGGGGGTTTGTCAAAATTATAACTATGACAATTTTATTTATTCATTTTATATTTTTA CTCAAAGATATTATATATATATATATATATATATATATGTATATTTTTTTTTTTTTTTTTTTTTT ATTATTTATTTATTTTCTATTGCACTAGTACAAATAAGAATGGTTAATAAAATCATACAATGATC ATTTAAAAAAGAAATATTATATATTTATTTATATATAATTATATT Found at i:642025 original size:2 final size:2 Alignment explanation
Indices: 642018--642064 Score: 87 Period size: 2 Copynumber: 24.0 Consensus size: 2 642008 TATTGTACCA 642018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 642059 AT AT AT 1 AT AT AT 642065 TTTATTTTAT Statistics Matches: 44, Mismatches: 0, Indels: 2 0.96 0.00 0.04 Matches are distributed among these distances: 1 1 0.02 2 43 0.98 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (2 bp): AT Left flanking sequence: Indices 641518 -- 642017 AAAATGTAATATATATATTATGTATATCTTATTATTTTTTATTTATTATTATTTTATTTATTTTT TATTTTTTTATTTTTTTATATTTTTTTTTCTTTCTTATTTCTGTTTTTATGACTTGTTTTTTCGT TTATTAAGAAATCTAATTAAAAGTGTGTACTTTTAAAACAAAATAATAAGATATCATATGTATAT ATATATATATATATATATATATATATTTATATTTATATATTTATATTTATATATGTCTATTTTGT TTTGTTTTATAAATATTAAGAAAATATGAACTAAGACACCAAGCATATATTGTTATATCTTATAT ATGATAGTATATAAGTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCACAT CATGTTCTTTTAAAAGGTATATATATATATATATATATATATATATATATTTCCGTATGAACATG GGATAATATAAAGGATAATCAAAAATATATAAAACTATTGTACCA Right flanking sequence: Indices 642065 -- 642564 TTTATTTTATTTTTATTTATTTATTTGGTTCTTTGTTTGTTTAGGGTTATCTAATAATACGTTAG TCCTTTGATATACATATAATTATACAGCATATCCATTTTTAATGCTTTAAAATTTAATGCAATTT TAATACGATTTCTTAAAATTAGAAATAAATTTGGGGGTTTGTCAAAATTATAACTATGACAATTT TATTTATTCATTTTATATTTTTACTCAAAGATATTATATATATATATATATATATATATATGTAT ATTTTTTTTTTTTTTTTTTTTTTATTATTTATTTATTTTCTATTGCACTAGTACAAATAAGAATG GTTAATAAAATCATACAATGATCATTTAAAAAAGAAATATTATATATTTATTTATATATAATTAT ATTATTATTTATTTGTTTTATTTTTTATTTTTTTTGTTACTTGTATTAAGCTTTAAAATATATTT TAAGTTATTTGTTATTTATATGTAAAAATTTGTTGATTTGTTGAT Found at i:642080 original size:6 final size:6 Alignment explanation
Indices: 642064--642082 Score: 31 Period size: 6 Copynumber: 3.3 Consensus size: 6 642054 ATATAATATA 642064 TTTTA- TTTTAT TTTTAT TT 1 TTTTAT TTTTAT TTTTAT TT 642083 ATTTATTTGG Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 5 5 0.38 6 8 0.62 ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84 Consensus pattern (6 bp): TTTTAT Left flanking sequence: Indices 641564 -- 642063 TATTATTTTATTTATTTTTTATTTTTTTATTTTTTTATATTTTTTTTTCTTTCTTATTTCTGTTT TTATGACTTGTTTTTTCGTTTATTAAGAAATCTAATTAAAAGTGTGTACTTTTAAAACAAAATAA TAAGATATCATATGTATATATATATATATATATATATATATATATTTATATTTATATATTTATAT TTATATATGTCTATTTTGTTTTGTTTTATAAATATTAAGAAAATATGAACTAAGACACCAAGCAT ATATTGTTATATCTTATATATGATAGTATATAAGTTGTTGGTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTCTCACATCATGTTCTTTTAAAAGGTATATATATATATATATATATATATATAT ATATTTCCGTATGAACATGGGATAATATAAAGGATAATCAAAAATATATAAAACTATTGTACCAA TATATATATATATATATATATATATATATATATATATATAATATA Right flanking sequence: Indices 642083 -- 642582 ATTTATTTGGTTCTTTGTTTGTTTAGGGTTATCTAATAATACGTTAGTCCTTTGATATACATATA ATTATACAGCATATCCATTTTTAATGCTTTAAAATTTAATGCAATTTTAATACGATTTCTTAAAA TTAGAAATAAATTTGGGGGTTTGTCAAAATTATAACTATGACAATTTTATTTATTCATTTTATAT TTTTACTCAAAGATATTATATATATATATATATATATATATATGTATATTTTTTTTTTTTTTTTT TTTTTATTATTTATTTATTTTCTATTGCACTAGTACAAATAAGAATGGTTAATAAAATCATACAA TGATCATTTAAAAAAGAAATATTATATATTTATTTATATATAATTATATTATTATTTATTTGTTT TATTTTTTATTTTTTTTGTTACTTGTATTAAGCTTTAAAATATATTTTAAGTTATTTGTTATTTA TATGTAAAAATTTGTTGATTTGTTGATTTTTTTTTTTTTTTTTTT Found at i:642570 original size:1 final size:1 Alignment explanation
Indices: 642564--642588 Score: 50 Period size: 1 Copynumber: 25.0 Consensus size: 1 642554 GATTTGTTGA 642564 TTTTTTTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTT 642589 AGCCATGTCT Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 24 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 642064 -- 642563 TTTTATTTTATTTTTATTTATTTATTTGGTTCTTTGTTTGTTTAGGGTTATCTAATAATACGTTA GTCCTTTGATATACATATAATTATACAGCATATCCATTTTTAATGCTTTAAAATTTAATGCAATT TTAATACGATTTCTTAAAATTAGAAATAAATTTGGGGGTTTGTCAAAATTATAACTATGACAATT TTATTTATTCATTTTATATTTTTACTCAAAGATATTATATATATATATATATATATATATATGTA TATTTTTTTTTTTTTTTTTTTTTTATTATTTATTTATTTTCTATTGCACTAGTACAAATAAGAAT GGTTAATAAAATCATACAATGATCATTTAAAAAAGAAATATTATATATTTATTTATATATAATTA TATTATTATTTATTTGTTTTATTTTTTATTTTTTTTGTTACTTGTATTAAGCTTTAAAATATATT TTAAGTTATTTGTTATTTATATGTAAAAATTTGTTGATTTGTTGA Right flanking sequence: Indices 642589 -- 643088 AGCCATGTCTCATTTTGACATATTTAATAGTTATAAAATAAATACAGTATATATAAAGATTTTTT TTTTTTTTTTTTTTTTTTTTATCTATTTTTATTTCATATTAATATAATATTTAATTATACATTTG AAACATTTCATACATTTTATACATTTCATACATTTTATACATTTCGTATATTTCATACATTTCGT ATATTTCATACATTTCTTACATTTCATACATTTCTTACATTTCATACATTTTATACATTTCATCT TTGTCCTCACATATTTTTACATTGTATGTTTGACTTGTTGCTTATCTAAAATAAAAAATATATAT ATATATAATATGTATATATTTTATTAATTTGTCTAACATATATATATATATATATATATATATAT ATATATATATTTATATTTATATATATTTATATTTGTCATAGCAATTTCGTTTTTTTAAATAAGAG ATGTATATAATATATATGAAATGTAAGTTTTTACATAAGGTTATG Found at i:642683 original size:1 final size:1 Alignment explanation
Indices: 642648--642673 Score: 52 Period size: 1 Copynumber: 26.0 Consensus size: 1 642638 TATATAAAGA 642648 TTTTTTTTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTT 642674 ATCTATTTTT Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 25 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 642148 -- 642647 ATTATACAGCATATCCATTTTTAATGCTTTAAAATTTAATGCAATTTTAATACGATTTCTTAAAA TTAGAAATAAATTTGGGGGTTTGTCAAAATTATAACTATGACAATTTTATTTATTCATTTTATAT TTTTACTCAAAGATATTATATATATATATATATATATATATATGTATATTTTTTTTTTTTTTTTT TTTTTATTATTTATTTATTTTCTATTGCACTAGTACAAATAAGAATGGTTAATAAAATCATACAA TGATCATTTAAAAAAGAAATATTATATATTTATTTATATATAATTATATTATTATTTATTTGTTT TATTTTTTATTTTTTTTGTTACTTGTATTAAGCTTTAAAATATATTTTAAGTTATTTGTTATTTA TATGTAAAAATTTGTTGATTTGTTGATTTTTTTTTTTTTTTTTTTTTTTTTAGCCATGTCTCATT TTGACATATTTAATAGTTATAAAATAAATACAGTATATATAAAGA Right flanking sequence: Indices 642674 -- 643173 ATCTATTTTTATTTCATATTAATATAATATTTAATTATACATTTGAAACATTTCATACATTTTAT ACATTTCATACATTTTATACATTTCGTATATTTCATACATTTCGTATATTTCATACATTTCTTAC ATTTCATACATTTCTTACATTTCATACATTTTATACATTTCATCTTTGTCCTCACATATTTTTAC ATTGTATGTTTGACTTGTTGCTTATCTAAAATAAAAAATATATATATATATAATATGTATATATT TTATTAATTTGTCTAACATATATATATATATATATATATATATATATATATATATTTATATTTAT ATATATTTATATTTGTCATAGCAATTTCGTTTTTTTAAATAAGAGATGTATATAATATATATGAA ATGTAAGTTTTTACATAAGGTTATGTTAATATACTTAATACACACACGAATATATATAAATATAT ATATATAAATATATATATATATATATATATATATGTGTAACTTTT Found at i:643118 original size:2 final size:2 Alignment explanation
Indices: 643113--643162 Score: 86 Period size: 2 Copynumber: 25.0 Consensus size: 2 643103 ACACACACGA * * 643113 AT AT AT AT AA AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 643155 AT AT AT AT 1 AT AT AT AT 643163 GTGTAACTTT Statistics Matches: 44, Mismatches: 4, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 2 44 1.00 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (2 bp): AT Left flanking sequence: Indices 642613 -- 643112 TAATAGTTATAAAATAAATACAGTATATATAAAGATTTTTTTTTTTTTTTTTTTTTTTTTTATCT ATTTTTATTTCATATTAATATAATATTTAATTATACATTTGAAACATTTCATACATTTTATACAT TTCATACATTTTATACATTTCGTATATTTCATACATTTCGTATATTTCATACATTTCTTACATTT CATACATTTCTTACATTTCATACATTTTATACATTTCATCTTTGTCCTCACATATTTTTACATTG TATGTTTGACTTGTTGCTTATCTAAAATAAAAAATATATATATATATAATATGTATATATTTTAT TAATTTGTCTAACATATATATATATATATATATATATATATATATATATATTTATATTTATATAT ATTTATATTTGTCATAGCAATTTCGTTTTTTTAAATAAGAGATGTATATAATATATATGAAATGT AAGTTTTTACATAAGGTTATGTTAATATACTTAATACACACACGA Right flanking sequence: Indices 643163 -- 643662 GTGTAACTTTTCAATTCCTTATTTTTAATATTACAAATATTATAAAGTACAAACCAGTACATTTT GTACTAATGTATATAAATTATTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATAT ATAAGACAAATAAGAAATATATATATATATATATATATTTATTGATACAATATACTTAAAGGATA GAAAAAGAAAAGAACAATAAAATATAAATGCATACATATAAGGAGTATTATTATATATATATATA TATATATTTTTTTATTTAAGTATTTAATAATTTTAAATAAAATAAACATGTCAATTTTATCATAT TATTCTTTTTAAACTTTTTTTTTTTTTTTAAATGGCTTATCGATTAACAATAAGTAGGCATATAA AATAATATATGCAATAGATAGAAATTAAATTAAAAAAAAAAAAAAAAAAATATACATATATATAT ATATATATATATAAATAAATAATATATGTTTATTTGTTTACATAT Found at i:643262 original size:1 final size:1 Alignment explanation
Indices: 643256--643286 Score: 62 Period size: 1 Copynumber: 31.0 Consensus size: 1 643246 TATTGTGGGG 643256 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 643287 GTATATATAA Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 30 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 642756 -- 643255 TACATTTCGTATATTTCATACATTTCGTATATTTCATACATTTCTTACATTTCATACATTTCTTA CATTTCATACATTTTATACATTTCATCTTTGTCCTCACATATTTTTACATTGTATGTTTGACTTG TTGCTTATCTAAAATAAAAAATATATATATATATAATATGTATATATTTTATTAATTTGTCTAAC ATATATATATATATATATATATATATATATATATATATTTATATTTATATATATTTATATTTGTC ATAGCAATTTCGTTTTTTTAAATAAGAGATGTATATAATATATATGAAATGTAAGTTTTTACATA AGGTTATGTTAATATACTTAATACACACACGAATATATATAAATATATATATATAAATATATATA TATATATATATATATATGTGTAACTTTTCAATTCCTTATTTTTAATATTACAAATATTATAAAGT ACAAACCAGTACATTTTGTACTAATGTATATAAATTATTGTGGGG Right flanking sequence: Indices 643287 -- 643786 GTATATATAAGACAAATAAGAAATATATATATATATATATATATTTATTGATACAATATACTTAA AGGATAGAAAAAGAAAAGAACAATAAAATATAAATGCATACATATAAGGAGTATTATTATATATA TATATATATATATTTTTTTATTTAAGTATTTAATAATTTTAAATAAAATAAACATGTCAATTTTA TCATATTATTCTTTTTAAACTTTTTTTTTTTTTTTAAATGGCTTATCGATTAACAATAAGTAGGC ATATAAAATAATATATGCAATAGATAGAAATTAAATTAAAAAAAAAAAAAAAAAAATATACATAT ATATATATATATATATATAAATAAATAATATATGTTTATTTGTTTACATATATATATATTTTATT TATGATAATGTAAATATTGTAAAATGAAAAAGCCATTTTAAACACATATACCTATGTTTCAATGA TTACCTTTTATATTTTGTTATTTTATTTTATTTTTTTTATGTGAT Found at i:643314 original size:2 final size:2 Alignment explanation
Indices: 643309--643334 Score: 45 Period size: 2 Copynumber: 13.0 Consensus size: 2 643299 CAAATAAGAA * 643309 AT AT AT AT AT AT AT AT AT AT AT TT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT 643335 TGATACAATA Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 2 22 1.00 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (2 bp): AT Left flanking sequence: Indices 642809 -- 643308 ATACATTTCTTACATTTCATACATTTTATACATTTCATCTTTGTCCTCACATATTTTTACATTGT ATGTTTGACTTGTTGCTTATCTAAAATAAAAAATATATATATATATAATATGTATATATTTTATT AATTTGTCTAACATATATATATATATATATATATATATATATATATATATTTATATTTATATATA TTTATATTTGTCATAGCAATTTCGTTTTTTTAAATAAGAGATGTATATAATATATATGAAATGTA AGTTTTTACATAAGGTTATGTTAATATACTTAATACACACACGAATATATATAAATATATATATA TAAATATATATATATATATATATATATATGTGTAACTTTTCAATTCCTTATTTTTAATATTACAA ATATTATAAAGTACAAACCAGTACATTTTGTACTAATGTATATAAATTATTGTGGGGAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAGTATATATAAGACAAATAAGAA Right flanking sequence: Indices 643335 -- 643834 TGATACAATATACTTAAAGGATAGAAAAAGAAAAGAACAATAAAATATAAATGCATACATATAAG GAGTATTATTATATATATATATATATATATTTTTTTATTTAAGTATTTAATAATTTTAAATAAAA TAAACATGTCAATTTTATCATATTATTCTTTTTAAACTTTTTTTTTTTTTTTAAATGGCTTATCG ATTAACAATAAGTAGGCATATAAAATAATATATGCAATAGATAGAAATTAAATTAAAAAAAAAAA AAAAAAAATATACATATATATATATATATATATATAAATAAATAATATATGTTTATTTGTTTACA TATATATATATTTTATTTATGATAATGTAAATATTGTAAAATGAAAAAGCCATTTTAAACACATA TACCTATGTTTCAATGATTACCTTTTATATTTTGTTATTTTATTTTATTTTTTTTATGTGATTTA TATATTACAATAAATATATATACTTTATAAATATAATTTATAAAT Found at i:643416 original size:2 final size:2 Alignment explanation
Indices: 643409--643429 Score: 42 Period size: 2 Copynumber: 10.5 Consensus size: 2 643399 GGAGTATTAT 643409 TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA T 643430 TTTTTTATTT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 19 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Left flanking sequence: Indices 642909 -- 643408 TATATATATATAATATGTATATATTTTATTAATTTGTCTAACATATATATATATATATATATATA TATATATATATATATTTATATTTATATATATTTATATTTGTCATAGCAATTTCGTTTTTTTAAAT AAGAGATGTATATAATATATATGAAATGTAAGTTTTTACATAAGGTTATGTTAATATACTTAATA CACACACGAATATATATAAATATATATATATAAATATATATATATATATATATATATATGTGTAA CTTTTCAATTCCTTATTTTTAATATTACAAATATTATAAAGTACAAACCAGTACATTTTGTACTA ATGTATATAAATTATTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATATATAAGA CAAATAAGAAATATATATATATATATATATATTTATTGATACAATATACTTAAAGGATAGAAAAA GAAAAGAACAATAAAATATAAATGCATACATATAAGGAGTATTAT Right flanking sequence: Indices 643430 -- 643929 TTTTTTATTTAAGTATTTAATAATTTTAAATAAAATAAACATGTCAATTTTATCATATTATTCTT TTTAAACTTTTTTTTTTTTTTTAAATGGCTTATCGATTAACAATAAGTAGGCATATAAAATAATA TATGCAATAGATAGAAATTAAATTAAAAAAAAAAAAAAAAAAATATACATATATATATATATATA TATATAAATAAATAATATATGTTTATTTGTTTACATATATATATATTTTATTTATGATAATGTAA ATATTGTAAAATGAAAAAGCCATTTTAAACACATATACCTATGTTTCAATGATTACCTTTTATAT TTTGTTATTTTATTTTATTTTTTTTATGTGATTTATATATTACAATAAATATATATACTTTATAA ATATAATTTATAAATTACAATTATATTTTATATGTTTGGTGTGTGCTTATTTATCTACATATATT TTAAAGAAAGTACCCACCGTTTGAAGTCACTCGTTTGTTTTATTC Found at i:643506 original size:1 final size:1 Alignment explanation
Indices: 643502--643516 Score: 30 Period size: 1 Copynumber: 15.0 Consensus size: 1 643492 CTTTTTAAAC 643502 TTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTT 643517 AAATGGCTTA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 14 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 643002 -- 643501 TATTTATATTTGTCATAGCAATTTCGTTTTTTTAAATAAGAGATGTATATAATATATATGAAATG TAAGTTTTTACATAAGGTTATGTTAATATACTTAATACACACACGAATATATATAAATATATATA TATAAATATATATATATATATATATATATATGTGTAACTTTTCAATTCCTTATTTTTAATATTAC AAATATTATAAAGTACAAACCAGTACATTTTGTACTAATGTATATAAATTATTGTGGGGAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAGTATATATAAGACAAATAAGAAATATATATATATATATAT ATATTTATTGATACAATATACTTAAAGGATAGAAAAAGAAAAGAACAATAAAATATAAATGCATA CATATAAGGAGTATTATTATATATATATATATATATATTTTTTTATTTAAGTATTTAATAATTTT AAATAAAATAAACATGTCAATTTTATCATATTATTCTTTTTAAAC Right flanking sequence: Indices 643517 -- 644016 AAATGGCTTATCGATTAACAATAAGTAGGCATATAAAATAATATATGCAATAGATAGAAATTAAA TTAAAAAAAAAAAAAAAAAAATATACATATATATATATATATATATATAAATAAATAATATATGT TTATTTGTTTACATATATATATATTTTATTTATGATAATGTAAATATTGTAAAATGAAAAAGCCA TTTTAAACACATATACCTATGTTTCAATGATTACCTTTTATATTTTGTTATTTTATTTTATTTTT TTTATGTGATTTATATATTACAATAAATATATATACTTTATAAATATAATTTATAAATTACAATT ATATTTTATATGTTTGGTGTGTGCTTATTTATCTACATATATTTTAAAGAAAGTACCCACCGTTT GAAGTCACTCGTTTGTTTTATTCATTTTGTATCATATAATATATCATATAATATATCATATAATA TATCACATCATATATCACATCATATCACATCATATCGTTTTATTT Found at i:643584 original size:5 final size:5 Alignment explanation
Indices: 643574--643586 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 643564 CAATAGATAG 643574 AAATT AAATT AAA 1 AAATT AAATT AAA 643587 AAAAAAAAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (5 bp): AAATT Left flanking sequence: Indices 643074 -- 643573 TTACATAAGGTTATGTTAATATACTTAATACACACACGAATATATATAAATATATATATATAAAT ATATATATATATATATATATATATGTGTAACTTTTCAATTCCTTATTTTTAATATTACAAATATT ATAAAGTACAAACCAGTACATTTTGTACTAATGTATATAAATTATTGTGGGGAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAGTATATATAAGACAAATAAGAAATATATATATATATATATATATTTA TTGATACAATATACTTAAAGGATAGAAAAAGAAAAGAACAATAAAATATAAATGCATACATATAA GGAGTATTATTATATATATATATATATATATTTTTTTATTTAAGTATTTAATAATTTTAAATAAA ATAAACATGTCAATTTTATCATATTATTCTTTTTAAACTTTTTTTTTTTTTTTAAATGGCTTATC GATTAACAATAAGTAGGCATATAAAATAATATATGCAATAGATAG Right flanking sequence: Indices 643587 -- 644086 AAAAAAAAAAAAAAAATATACATATATATATATATATATATATAAATAAATAATATATGTTTATT TGTTTACATATATATATATTTTATTTATGATAATGTAAATATTGTAAAATGAAAAAGCCATTTTA AACACATATACCTATGTTTCAATGATTACCTTTTATATTTTGTTATTTTATTTTATTTTTTTTAT GTGATTTATATATTACAATAAATATATATACTTTATAAATATAATTTATAAATTACAATTATATT TTATATGTTTGGTGTGTGCTTATTTATCTACATATATTTTAAAGAAAGTACCCACCGTTTGAAGT CACTCGTTTGTTTTATTCATTTTGTATCATATAATATATCATATAATATATCATATAATATATCA CATCATATATCACATCATATCACATCATATCGTTTTATTTCATATCGTTTCGTTTCATATCACTT TATCTAATGTTTGGAATTACATTAACAAAGTGCAAAATATACTTC Found at i:643590 original size:1 final size:1 Alignment explanation
Indices: 643584--643602 Score: 38 Period size: 1 Copynumber: 19.0 Consensus size: 1 643574 AAATTAAATT 643584 AAAAAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAA 643603 TATACATATA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 18 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 643084 -- 643583 TTATGTTAATATACTTAATACACACACGAATATATATAAATATATATATATAAATATATATATAT ATATATATATATATGTGTAACTTTTCAATTCCTTATTTTTAATATTACAAATATTATAAAGTACA AACCAGTACATTTTGTACTAATGTATATAAATTATTGTGGGGAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAGTATATATAAGACAAATAAGAAATATATATATATATATATATATTTATTGATACAAT ATACTTAAAGGATAGAAAAAGAAAAGAACAATAAAATATAAATGCATACATATAAGGAGTATTAT TATATATATATATATATATATTTTTTTATTTAAGTATTTAATAATTTTAAATAAAATAAACATGT CAATTTTATCATATTATTCTTTTTAAACTTTTTTTTTTTTTTTAAATGGCTTATCGATTAACAAT AAGTAGGCATATAAAATAATATATGCAATAGATAGAAATTAAATT Right flanking sequence: Indices 643603 -- 644102 TATACATATATATATATATATATATATAAATAAATAATATATGTTTATTTGTTTACATATATATA TATTTTATTTATGATAATGTAAATATTGTAAAATGAAAAAGCCATTTTAAACACATATACCTATG TTTCAATGATTACCTTTTATATTTTGTTATTTTATTTTATTTTTTTTATGTGATTTATATATTAC AATAAATATATATACTTTATAAATATAATTTATAAATTACAATTATATTTTATATGTTTGGTGTG TGCTTATTTATCTACATATATTTTAAAGAAAGTACCCACCGTTTGAAGTCACTCGTTTGTTTTAT TCATTTTGTATCATATAATATATCATATAATATATCATATAATATATCACATCATATATCACATC ATATCACATCATATCGTTTTATTTCATATCGTTTCGTTTCATATCACTTTATCTAATGTTTGGAA TTACATTAACAAAGTGCAAAATATACTTCAATAATATATATTCGA Found at i:644480 original size:3 final size:3 Alignment explanation
Indices: 644472--644488 Score: 34 Period size: 3 Copynumber: 5.7 Consensus size: 3 644462 ACATCAAATT 644472 ATC ATC ATC ATC ATC AT 1 ATC ATC ATC ATC ATC AT 644489 AGTAAATTAG Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35 Consensus pattern (3 bp): ATC Left flanking sequence: Indices 643972 -- 644471 TATCACATCATATATCACATCATATCACATCATATCGTTTTATTTCATATCGTTTCGTTTCATAT CACTTTATCTAATGTTTGGAATTACATTAACAAAGTGCAAAATATACTTCAATAATATATATTCG ACCGTATCTCTCGAAGAAAAATTAGGGGGGGGCACCTATGGTGACGTGTACAAAGGGAAAGTAAT AAAATATAATAATAATAATAATAATAATGATTTATATCAAAATACAAATTATTTACCTTATGATT ATTATACTGATGAATTTGTTTTTTTTCGTAAAAATGTTTATGCCATAAAATTTTTTCGAGACGAT TTAAGGACCATAAATGAAGAAGGTATAAGTTGTACAACATTAAGAGAATTAAGCTGTTTAAAAAA TATTGGGAGGCATCCTAATATCCTTCGTTTAATAGATGTTACTATAGATAGACAAAAGCTTATAA GTGAATATATAAATAGACAGATATTACAACATTATACATCAAATT Right flanking sequence: Indices 644489 -- 644988 AGTAAATTAGATATCACACCCTTGGCAGCTGATCAGAAATTTATTTTTGCTGCTTATGAATATTG TGATGGTGGAGATCTAAAAAAGCTTATACAAAAAACAAAAATTAGTGATGATCAAGCGGGACTTA ATTTGAAAGAAGCCAAATGGCTATCCTTCCAACTATTAAATGGATTAGCTTATTTACATAATAAT AAAATGTGTCATAGAGATTTGAAACCTGAGAATGTTATGTTACAAGAGACATCTAATCATAAGTA TCTTTTAAAAATTGGAGATTTAGGTTTATGCAGAGAATTAAAAAACGATGGTGACATGACACCTA CTGTTTGTACAATATATTACCGACCTTTGGAAGTGCTGCTTTCGAAATTTGAATTATCTAATAAG CATCATCATAAAAGTCATGCAACAAATCATAGAAGGGATGACAATGATGATGATGAAGATGAAGA TGATGATGATGATGAAGATGAAGATGATGATGATGAAGAAGAAGA Found at i:645654 original size:1 final size:1 Alignment explanation
Indices: 645648--645660 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 645638 GAAATTGAAC 645648 AAAAAAAAAAAAA 1 AAAAAAAAAAAAA 645661 TTTACTTACG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 645148 -- 645647 AAAAAAGAAAAAAAAAAAAGAGCAAGATGATGATTATTATAATAAAGATTTTCAATATGGTTTAA ATGTTGATATATGGTCAGCTGCATGCATTATATGTGAACTTATTATTGGAAGACCTCTTTTTAAA GGAGTCACAGAATTCGATTTGATTATTAGGATCGTTAATTCTTTAGGTAAACCTAATAAAGATGA ACTAGAATTTTTTAGTAATTCCCGTTTTTATCCTTTAAAGGAGGATTTTTTTAATGTTCATATAA AAAATAAAAAGGATGCTTTAAACGTTATTACGAATGGACGAATAGACGAGTTAGGTATTGATTTG CTTGTTAAGATGTTGAAATATAATCCGAATGATCGTATTACGGCAGCTGATGCTTTATCGCATCC TTGGTTTTCAGATATAAGATTTGATAACTTGGATGGTATAGGTGTTTATAATTGGTATGTACATT GTTTAAAATATTATATTGGTATTAAAACTTTTAGAGAAATTGAAC Right flanking sequence: Indices 645661 -- 646160 TTTACTTACGACAACTATGATTTCTCATTTTTTATGTAAATCAAATGATAAGTATGCTAAGGTTA TTTTTAAGTTAATTAATGATACCTTTAAAAATTTAGGAGGATATAAAAAAAGTGGACGAAGATCT TTTGCTATTTTTTCAGATAAATATGCTCATGATGAAAAGAATACAAATGGATTTATTAAAAGAGC AAGTATTAAAGTATTAAATGATATGAAAGAAAAAAATGTGAAAGAAACAAAAGAAGAGTTTTCTT TTTATGATGAAAGTACAACTTATATGACACCACCAACATCTGTTAAAAGAAGAAAATTCAATAGA TCAAGTTATCATGTTATGAACCCAGAACATTCATATGAATTTACAAATAAAATCAGAATGAAAAG AAATCTATCCATTCCAGATTTTTCAACACCTGATAAAAGTATACAAAAACAAAAAAAAATAAAAG CTGCTACGACAAAGAATAAAGCAAGTCATCTAGAATTTTCTCATT Found at i:646104 original size:6 final size:6 Alignment explanation
Indices: 646093--646109 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 646083 ATAAAAGTAT * 646093 ACAAAA ACAAAA AAAAA 1 ACAAAA ACAAAA ACAAA 646110 TAAAAGCTGC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00 Consensus pattern (6 bp): ACAAAA Left flanking sequence: Indices 645593 -- 646092 TATGTACATTGTTTAAAATATTATATTGGTATTAAAACTTTTAGAGAAATTGAACAAAAAAAAAA AAATTTACTTACGACAACTATGATTTCTCATTTTTTATGTAAATCAAATGATAAGTATGCTAAGG TTATTTTTAAGTTAATTAATGATACCTTTAAAAATTTAGGAGGATATAAAAAAAGTGGACGAAGA TCTTTTGCTATTTTTTCAGATAAATATGCTCATGATGAAAAGAATACAAATGGATTTATTAAAAG AGCAAGTATTAAAGTATTAAATGATATGAAAGAAAAAAATGTGAAAGAAACAAAAGAAGAGTTTT CTTTTTATGATGAAAGTACAACTTATATGACACCACCAACATCTGTTAAAAGAAGAAAATTCAAT AGATCAAGTTATCATGTTATGAACCCAGAACATTCATATGAATTTACAAATAAAATCAGAATGAA AAGAAATCTATCCATTCCAGATTTTTCAACACCTGATAAAAGTAT Right flanking sequence: Indices 646110 -- 646609 TAAAAGCTGCTACGACAAAGAATAAAGCAAGTCATCTAGAATTTTCTCATTTTTAAGGAAAAAGA AAAATATATATAAATATTTATTTATTTATTTATATATATATTTATTTATTTATATATTTTTATTC ATATTTATATTTTTATCCTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTGTATAATTGGATGTA AACAAAACATTTTTGTTACAATATTATAAATACAAACTTGTATTATAATCATCTTATTGTCTTTT TTTTTTTAAATTGATTAAATGAATAAATAAATAAATAAGTACATATATATATTAACAAACGTGTA ACAATTATACTGCCATAAAATTATAAACAATTTTAAAATATAAACAATTTTAAAATATAAATATT TTCAAAATATAAATAATTTCAAAATATAAATAATTTCAAAATATAAACAATTTCAAAATATAAAT AATTTCAAAATATAAACAATTTTATTATAAATATATAAAAATTTT Found at i:646196 original size:4 final size:4 Alignment explanation
Indices: 646189--646233 Score: 69 Period size: 4 Copynumber: 11.2 Consensus size: 4 646179 TATATATAAA * * * 646189 TATT TATT TATT TATT TATA TATA TATT TATT TATT TATA TATT T 1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT T 646234 TTATTCATAT Statistics Matches: 37, Mismatches: 4, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 4 37 1.00 ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69 Consensus pattern (4 bp): TATT Left flanking sequence: Indices 645689 -- 646188 TTTTTATGTAAATCAAATGATAAGTATGCTAAGGTTATTTTTAAGTTAATTAATGATACCTTTAA AAATTTAGGAGGATATAAAAAAAGTGGACGAAGATCTTTTGCTATTTTTTCAGATAAATATGCTC ATGATGAAAAGAATACAAATGGATTTATTAAAAGAGCAAGTATTAAAGTATTAAATGATATGAAA GAAAAAAATGTGAAAGAAACAAAAGAAGAGTTTTCTTTTTATGATGAAAGTACAACTTATATGAC ACCACCAACATCTGTTAAAAGAAGAAAATTCAATAGATCAAGTTATCATGTTATGAACCCAGAAC ATTCATATGAATTTACAAATAAAATCAGAATGAAAAGAAATCTATCCATTCCAGATTTTTCAACA CCTGATAAAAGTATACAAAAACAAAAAAAAATAAAAGCTGCTACGACAAAGAATAAAGCAAGTCA TCTAGAATTTTCTCATTTTTAAGGAAAAAGAAAAATATATATAAA Right flanking sequence: Indices 646234 -- 646733 TTATTCATATTTATATTTTTATCCTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTGTATAATTG GATGTAAACAAAACATTTTTGTTACAATATTATAAATACAAACTTGTATTATAATCATCTTATTG TCTTTTTTTTTTTAAATTGATTAAATGAATAAATAAATAAATAAGTACATATATATATTAACAAA CGTGTAACAATTATACTGCCATAAAATTATAAACAATTTTAAAATATAAACAATTTTAAAATATA AATATTTTCAAAATATAAATAATTTCAAAATATAAATAATTTCAAAATATAAACAATTTCAAAAT ATAAATAATTTCAAAATATAAACAATTTTATTATAAATATATAAAAATTTTTATTTTCTTATAAT CTTTACTCCTCAACAAAATTGCATTTGACATGATGGACATTTGGTATTATGTGACGTTAAAAACC ACCTGAACAAATAAATAAATAAATATACATAAATATTTAAATATA Found at i:646244 original size:6 final size:6 Alignment explanation
Indices: 646235--646250 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 646225 TATATATTTT * 646235 TATTCA TATTTA TATT 1 TATTCA TATTCA TATT 646251 TTTATCCTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62 Consensus pattern (6 bp): TATTCA Left flanking sequence: Indices 645735 -- 646234 TAATTAATGATACCTTTAAAAATTTAGGAGGATATAAAAAAAGTGGACGAAGATCTTTTGCTATT TTTTCAGATAAATATGCTCATGATGAAAAGAATACAAATGGATTTATTAAAAGAGCAAGTATTAA AGTATTAAATGATATGAAAGAAAAAAATGTGAAAGAAACAAAAGAAGAGTTTTCTTTTTATGATG AAAGTACAACTTATATGACACCACCAACATCTGTTAAAAGAAGAAAATTCAATAGATCAAGTTAT CATGTTATGAACCCAGAACATTCATATGAATTTACAAATAAAATCAGAATGAAAAGAAATCTATC CATTCCAGATTTTTCAACACCTGATAAAAGTATACAAAAACAAAAAAAAATAAAAGCTGCTACGA CAAAGAATAAAGCAAGTCATCTAGAATTTTCTCATTTTTAAGGAAAAAGAAAAATATATATAAAT ATTTATTTATTTATTTATATATATATTTATTTATTTATATATTTT Right flanking sequence: Indices 646251 -- 646750 TTTATCCTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTGTATAATTGGATGTAAACAAAACATT TTTGTTACAATATTATAAATACAAACTTGTATTATAATCATCTTATTGTCTTTTTTTTTTTAAAT TGATTAAATGAATAAATAAATAAATAAGTACATATATATATTAACAAACGTGTAACAATTATACT GCCATAAAATTATAAACAATTTTAAAATATAAACAATTTTAAAATATAAATATTTTCAAAATATA AATAATTTCAAAATATAAATAATTTCAAAATATAAACAATTTCAAAATATAAATAATTTCAAAAT ATAAACAATTTTATTATAAATATATAAAAATTTTTATTTTCTTATAATCTTTACTCCTCAACAAA ATTGCATTTGACATGATGGACATTTGGTATTATGTGACGTTAAAAACCACCTGAACAAATAAATA AATAAATATACATAAATATTTAAATATATATATATATATATATTT Found at