TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 102851237 P. falciparum 3D7 GENOMIC chr13 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2895605 ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41 Warning! 400 characters in sequence are not A, C, G, or T Found at i: i:298870 original size:7 final size:7 Alignment explanation
Indices: 298858--298871 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 298848 AGGGTTAAAG 298858 TATAATA 1 TATAATA 298865 TATAATA 1 TATAATA 298872 ACTAATGTAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (7 bp): TATAATA Left flanking sequence: Indices 298358 -- 298857 AATAAATTTCTCATCTTCTAGCTGTTTTAATACTTGTCCTATTATTTGACCTACACTTTGTAAGG CCTTTAAATTATCTTCAGTTTTCTCATATTTTTTATTTAACTCTTTTATATCTAATCTTAACTTC TTTACTTTACTCTCAATTTCTCTGTGTTCAATAACTTTCTTCACATACAATTTTATGCTTTCCTT GTTATCCATCGTAACTAATTAGAAAAATAAAGATACATATATTATATATATATGTATATATGTAT GTATGTATGTATGTGTGTGTGCTAAACAAAATTTATAAGGTATATATTAAAACATGTCAAGCAAA TATATTAAACGGTAAATTATATTATATCACAATAAATCACAAAATTATGTACTAAGAAGGAGCAA CATATATATTTGTATATATAAATATATATATATATTTATATATTTATATAATAAAGTATATTTAA AAATATATATTATATGACTTTAATGATTTTCATATAGGGTTAAAG Right flanking sequence: Indices 298872 -- 299371 ACTAATGTATCATTTTACAGATTTATAAATCAACAAAATTCAAAAACGTAAAGTCAATAAGTAAA AAAAAAATATATATATTAACTATTATAACTTTTCACAATATATTACAAACGATAAAATATATACA TATATTATTACATATTATTATATATCATATAATATAAAATAAATATATATATATATATATATATA TTTTATTTTTCTTGTTTTTCTTAATTACCTCATTATTTTGTTCGATATATTTTTGTAAACATTCA AGATTTTTTATTTTACCTCTATTTTTTTCTTTTCCTTTTAGTATTATTTTTTTTTTTTTTTTTTT TTTTGCATAAAAAGAAAAACAAAATTAATATATAACATAAAATGTATTATAAAACATATATATAT AATATATATATACATATATATTTAAATATATATATTTTTTTTTTATTACTTTTATATTTTTCCTC TTAAAAATTATTATTTATTATTTTTTTTTTCTTTTCATTTGGTAT Found at i:299346 original size:7 final size:7 Alignment explanation
Indices: 299334--299349 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 299324 CTCTTAAAAA 299334 TTATTAT 1 TTATTAT 299341 TTATTAT 1 TTATTAT 299348 TT 1 TT 299350 TTTTTTTCTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75 Consensus pattern (7 bp): TTATTAT Left flanking sequence: Indices 298834 -- 299333 AATGATTTTCATATAGGGTTAAAGTATAATATATAATAACTAATGTATCATTTTACAGATTTATA AATCAACAAAATTCAAAAACGTAAAGTCAATAAGTAAAAAAAAAATATATATATTAACTATTATA ACTTTTCACAATATATTACAAACGATAAAATATATACATATATTATTACATATTATTATATATCA TATAATATAAAATAAATATATATATATATATATATATATTTTATTTTTCTTGTTTTTCTTAATTA CCTCATTATTTTGTTCGATATATTTTTGTAAACATTCAAGATTTTTTATTTTACCTCTATTTTTT TCTTTTCCTTTTAGTATTATTTTTTTTTTTTTTTTTTTTTTTGCATAAAAAGAAAAACAAAATTA ATATATAACATAAAATGTATTATAAAACATATATATATAATATATATATACATATATATTTAAAT ATATATATTTTTTTTTTATTACTTTTATATTTTTCCTCTTAAAAA Right flanking sequence: Indices 299350 -- 299849 TTTTTTTCTTTTCATTTGGTATATATGATAATATGAAGGTGAAAAAAATAAAAAGAAAAGAAAAT GAATTATAACAAATAAAAAAAAAATGAAATATATATAATATATATATTATATATGTATATAATAT TATGTTCGATGGGATATAAAATATTATTTTTCAAAAGAGAAATAGGCACACTTGTTTCACAATAT ATGGAATACCAACTATTTTATTTTATAAATAAATATAAATATATATTTTTTTTTTTTTTTTATGG CACAATATTAATAAATTATATATATAATATAAATAAATAAATATATATATATTATATATATATAT ATCATTATATATATTGTTTATTTTTATATTCAAATATAATATTTTTTTTAATTTATTCTCTTTAT ATATAATATATGTAAAATGGAATATTAATTTTTAAAATATAATATTATTATCATATAATTATAAT TAAAAGAAACGTCAGAAATGTTTTACCATGTTTTTATATAACTAT Found at i:299348 original size:10 final size:10 Alignment explanation
Indices: 299333--299352 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 299323 CCTCTTAAAA 299333 ATTATTATTT 1 ATTATTATTT * 299343 ATTATTTTTT 1 ATTATTATTT 299353 TTTTCTTTTC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75 Consensus pattern (10 bp): ATTATTATTT Left flanking sequence: Indices 298833 -- 299332 TAATGATTTTCATATAGGGTTAAAGTATAATATATAATAACTAATGTATCATTTTACAGATTTAT AAATCAACAAAATTCAAAAACGTAAAGTCAATAAGTAAAAAAAAAATATATATATTAACTATTAT AACTTTTCACAATATATTACAAACGATAAAATATATACATATATTATTACATATTATTATATATC ATATAATATAAAATAAATATATATATATATATATATATATTTTATTTTTCTTGTTTTTCTTAATT ACCTCATTATTTTGTTCGATATATTTTTGTAAACATTCAAGATTTTTTATTTTACCTCTATTTTT TTCTTTTCCTTTTAGTATTATTTTTTTTTTTTTTTTTTTTTTTGCATAAAAAGAAAAACAAAATT AATATATAACATAAAATGTATTATAAAACATATATATATAATATATATATACATATATATTTAAA TATATATATTTTTTTTTTATTACTTTTATATTTTTCCTCTTAAAA Right flanking sequence: Indices 299353 -- 299852 TTTTCTTTTCATTTGGTATATATGATAATATGAAGGTGAAAAAAATAAAAAGAAAAGAAAATGAA TTATAACAAATAAAAAAAAAATGAAATATATATAATATATATATTATATATGTATATAATATTAT GTTCGATGGGATATAAAATATTATTTTTCAAAAGAGAAATAGGCACACTTGTTTCACAATATATG GAATACCAACTATTTTATTTTATAAATAAATATAAATATATATTTTTTTTTTTTTTTTATGGCAC AATATTAATAAATTATATATATAATATAAATAAATAAATATATATATATTATATATATATATATC ATTATATATATTGTTTATTTTTATATTCAAATATAATATTTTTTTTAATTTATTCTCTTTATATA TAATATATGTAAAATGGAATATTAATTTTTAAAATATAATATTATTATCATATAATTATAATTAA AAGAAACGTCAGAAATGTTTTACCATGTTTTTATATAACTATGGA Found at i:299583 original size:10 final size:10 Alignment explanation
Indices: 299568--299590 Score: 39 Period size: 10 Copynumber: 2.3 Consensus size: 10 299558 TATTTTATTT 299568 TATAAATAAA 1 TATAAATAAA * 299578 TATAAATATA 1 TATAAATAAA 299588 TAT 1 TAT 299591 TTTTTTTTTT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39 Consensus pattern (10 bp): TATAAATAAA Left flanking sequence: Indices 299068 -- 299567 TTTATTTTTCTTGTTTTTCTTAATTACCTCATTATTTTGTTCGATATATTTTTGTAAACATTCAA GATTTTTTATTTTACCTCTATTTTTTTCTTTTCCTTTTAGTATTATTTTTTTTTTTTTTTTTTTT TTTGCATAAAAAGAAAAACAAAATTAATATATAACATAAAATGTATTATAAAACATATATATATA ATATATATATACATATATATTTAAATATATATATTTTTTTTTTATTACTTTTATATTTTTCCTCT TAAAAATTATTATTTATTATTTTTTTTTTCTTTTCATTTGGTATATATGATAATATGAAGGTGAA AAAAATAAAAAGAAAAGAAAATGAATTATAACAAATAAAAAAAAAATGAAATATATATAATATAT ATATTATATATGTATATAATATTATGTTCGATGGGATATAAAATATTATTTTTCAAAAGAGAAAT AGGCACACTTGTTTCACAATATATGGAATACCAACTATTTTATTT Right flanking sequence: Indices 299591 -- 300090 TTTTTTTTTTTTTTTATGGCACAATATTAATAAATTATATATATAATATAAATAAATAAATATAT ATATATTATATATATATATATCATTATATATATTGTTTATTTTTATATTCAAATATAATATTTTT TTTAATTTATTCTCTTTATATATAATATATGTAAAATGGAATATTAATTTTTAAAATATAATATT ATTATCATATAATTATAATTAAAAGAAACGTCAGAAATGTTTTACCATGTTTTTATATAACTATG GATTTATAAAATATATAATATATTATACACTAAATTTATTAATTTATCCAACATAAAAATATACT CTAATTTCTTTTTATAATTTTATATTATTATAAAAATAAAAACATAATAATATCAACCGTAAATA AATATAAATATATATATATATATATATATATATATATTATTCCATTTAAGAATAATACATTGAAA AATAATGTTAATGTTATAAATAAAAAATAATATTGATTGATATTC Found at i:299873 original size:9 final size:9 Alignment explanation
Indices: 299855--299873 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 299845 ACTATGGATT 299855 TATAAAATA 1 TATAAAATA * 299864 TATAATATA 1 TATAAAATA 299873 T 1 T 299874 TATACACTAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42 Consensus pattern (9 bp): TATAAAATA Left flanking sequence: Indices 299355 -- 299854 TTCTTTTCATTTGGTATATATGATAATATGAAGGTGAAAAAAATAAAAAGAAAAGAAAATGAATT ATAACAAATAAAAAAAAAATGAAATATATATAATATATATATTATATATGTATATAATATTATGT TCGATGGGATATAAAATATTATTTTTCAAAAGAGAAATAGGCACACTTGTTTCACAATATATGGA ATACCAACTATTTTATTTTATAAATAAATATAAATATATATTTTTTTTTTTTTTTTATGGCACAA TATTAATAAATTATATATATAATATAAATAAATAAATATATATATATTATATATATATATATCAT TATATATATTGTTTATTTTTATATTCAAATATAATATTTTTTTTAATTTATTCTCTTTATATATA ATATATGTAAAATGGAATATTAATTTTTAAAATATAATATTATTATCATATAATTATAATTAAAA GAAACGTCAGAAATGTTTTACCATGTTTTTATATAACTATGGATT Right flanking sequence: Indices 299874 -- 300373 TATACACTAAATTTATTAATTTATCCAACATAAAAATATACTCTAATTTCTTTTTATAATTTTAT ATTATTATAAAAATAAAAACATAATAATATCAACCGTAAATAAATATAAATATATATATATATAT ATATATATATATATTATTCCATTTAAGAATAATACATTGAAAAATAATGTTAATGTTATAAATAA AAAATAATATTGATTGATATTCTTTTAATATTTTCCATTGTTCTTCAAAATCCCAAAAAAAAGAA AAAAAAAATACATATATATAAATGTATATATGTCAATATCTACACACATATATATAATTATTTGT TATTATTCCTCTTCCTGTGTATCATAAATAATATATATATATATATATATATATATAATATGTAT ATATTTATTTATTTGTTAAAAATTAAATATACTTTGATTATTATCTGGCTAGTTTGATATACAAT TCTTATTATTTAATATTTTTTTTTTTTATGTTTTTGAAAAATATG Found at i:303152 original size:7 final size:7 Alignment explanation
Indices: 303140--303154 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 303130 AATAATATTT 303140 AAAAAGG 1 AAAAAGG 303147 AAAAAGG 1 AAAAAGG 303154 A 1 A 303155 CAAGAAAATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00 Consensus pattern (7 bp): AAAAAGG Left flanking sequence: Indices 302640 -- 303139 ATAATAATAATAATAATGCTAAAAATAGGTTTTACTATAATAGAAAAAATATACCTTATCATTTC TTCAACAATATATACGAAGATGATTTTTTTCATCATTATAACAACCAAAAAAATAGAAATCCAGT TAATATTAAAAAAAAATTATGGTATGAATTCTTTTTCTTATCCTCATCACAAAAAAAAAAAACAA AAATATATAACCATAATGAAATAAAAAAAGTTTTATATCCTATAAAAAATATGTTCCTTTTACAA TATACTTATGAAGAAATATATGATGCAATAGAAGATGATAACAATGAGAAAAAAGAGAAAAAACA AAAAAAAAAACAACTCAGTGTTGTTCATTATTATTTCTATGTACATAAAATTCCTAAGAATATTT TAGTAAATAATGAATACTTTATAATATTTTTAATAAATGCTAATTGTAGGCATCAAAATAATATC TGTTACTTGGAAAAAAATAAACAGTCATATATACAAATAATATTT Right flanking sequence: Indices 303155 -- 303654 CAAGAAAATAATTATCTCTTCTTAAGCACCAACTTGTTAATGCCACAAGAAAATAATAATAATAA TATAACATATTTAAATAATAGTAACAATACAATGAATCCTTTAGTGACATTATTTATAAATAATC AAGAAATTGCTAAAAATACTTTATACAAAATTAACGAAATAGGAAAAGAAAAAGAAATCATTAAT ATTAAAATACTAAATAATACAGAAAAAAATAAACATACATTAAAAAACAAAACAAATATAATTCT GGATACTAATTTAATAATTGTAAGAGAATATGTTTTTTATAAATTGCTTCTAAAAATATTGTCTT ACTTTTCTTATTTTTATATCTTTTTCTTATCATGTCTTCAACCAGTACAAATGATGAATCCTATT CAAATGATACAAATCCTAACATTCATAAATATAAATTATTCATTCCCATCATTGTTTAGCTATTT TATAAAAAATATGCAAAGCCTTTCTTTTATATCCCATTTTATTTA Found at i:304310 original size:9 final size:9 Alignment explanation
Indices: 304296--304315 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 304286 AGCACACTTT * 304296 TAAATATTA 1 TAAATATAA 304305 TAAATATAA 1 TAAATATAA 304314 TA 1 TA 304316 TTTATTTTAT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (9 bp): TAAATATAA Left flanking sequence: Indices 303796 -- 304295 TTCATCTGATGGTTATAATTATAATATAGAACAAGACACATTGAAAAAAACAGTCAACAATTTTG TACATAACAATAATAATAAATATGTGCCTGGTAATATTCACAAAGAAAATAACATAAATGAAAAT ATTCAAAATGTTGAAAATGCTCAAAATATTCATTATGTTGAAAAAGATGAAAACATTCGCGATAT CCATAATGATAATAATTCGAACAACACCAATGACATATTAAATAATTCTTCTTCCAGAAACAATG TTGCTTGGTATAATAAAAACTATTTACAATATTTATTTTCTTTAAACAACAAAAAGGAACAACCC GAAAATAACCAAATGACATATAAAAAATTAGAGGGATTAAAAAAATATTTCATTAATAATATAAA AAATATATATATAAGCAAAAAGAAGAAGAAGAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAACG AAATACAAGACATGAAACTATTACATATATATATTAGCACACTTT Right flanking sequence: Indices 304316 -- 304815 TTTATTTTATTCATATTTTATTTTATATCTAAAAAATTCATATCTAAAAATAAGTATCTAAACAA ATTACATATACCTTTTTTATCTATTCAAAATTTTACATTATTCATATTTGATATATTTTTATATC CATTAATATTTTCTATATGCAATATAATACAATTTGAAAATATTTATCATATTAAAATATATTTT ATCTATATAGATTTTCTTGTTCTTAAAATTATTTGTCTATTTTTACTTGTGTCATTTGTAATTCT TTATATTGTTCTTCCAATACCTTTTATCTTATACATACATAATCATATTGTTTATAATTATAATT TCAAAAAATTTATTCCTAAATATATTAGTCATATAAATGGAATAGTAAATTATTTTCCCTTCAAA ATATTTCTCAAGAATATGTTATATTATCATAAATATCAAAATGAAAGTCAAGATAATCAACAGTT TCCTCCGTCGTCAAATAAAGTAAACACATCACATTCTAATATAAA Found at i:307224 original size:8 final size:8 Alignment explanation
Indices: 307211--307229 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 307201 TAAGGAACAA * 307211 AAATATAG 1 AAATATAC 307219 AAATATAC 1 AAATATAC 307227 AAA 1 AAA 307230 ATAATCATGT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21 Consensus pattern (8 bp): AAATATAC Left flanking sequence: Indices 306711 -- 307210 GAACAAATAATAATATATGTTCCATATTTTATCATAATAATAATCATAACAAAAAAAAAAAGTAT AAATTAAAACAACCATACACAAATATATCTACATTGAAAAATATAACATCTAATCATATAGAAAT ATTTCAATATGAAGGTTGTCTTCATTATGAATGTCAAGTCATAAAAACAGAAAAAAATAATATAA TATTTAATAATAAAAAAAATAAATTATACAAAAATTTATATTGTTATTATACAACTACGGATATA ATCAAAAGGTTATTAAAAATTGATACTATACCTATATATCTAAATGATGAAATGAAAAAAGAACA AAAAAGGTGTATATGTACAATACAAGTAATTAATGGGGAACATGATAGTATAACTAAAGGAATAT CGTTTTTTATGAAGAAAAAAAAAAGAAATAATCATAAATTATATACTTTATATTATAATAAAAAA TATAATATTTTTATAACAAAAGTGGAATCATCATCTAAGGAACAA Right flanking sequence: Indices 307230 -- 307729 ATAATCATGTGAATGAAAAAAAAGACAGAAATGAAATATATAACCAAATGAATGGTACATATATT ACCTCTAAAAAAAACAACGATAATTATCAAAATCATATGGATAACATAAATTCATATAATAAAGA ATATAAAATTATAAAAATTGATAAATATTCCTATACAACCATTAATGAAAATAATTTAATTATAA ATAGCTTATTCATTAAACCAAACAAAATATATAAATTACAAATAATATTTAAGGATAAAAGTCTT AACAATATTACATTTGATAATATAAAAAATGAGAGTAAAAGTTTTATTAAGAAAGAAGATATAAT AAATATAAAACAAAAGGAATGTACAAATAAAGAAAATACAAAATATTATAATAATGTAGAAGATG ATAATGAAAAATATAATAATATGAATACATATATATTAAATAAAAACAATTTAAACCAAGGACAT TATAACATATATACTGTTATATGTAAAGAAATAGGAAAACTCATA Found at i:307889 original size:7 final size:7 Alignment explanation
Indices: 307879--307892 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 307869 CCTCATTTGA 307879 GAAATAT 1 GAAATAT 307886 GAAATAT 1 GAAATAT 307893 ATCATGTATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29 Consensus pattern (7 bp): GAAATAT Left flanking sequence: Indices 307379 -- 307878 GATAAATATTCCTATACAACCATTAATGAAAATAATTTAATTATAAATAGCTTATTCATTAAACC AAACAAAATATATAAATTACAAATAATATTTAAGGATAAAAGTCTTAACAATATTACATTTGATA ATATAAAAAATGAGAGTAAAAGTTTTATTAAGAAAGAAGATATAATAAATATAAAACAAAAGGAA TGTACAAATAAAGAAAATACAAAATATTATAATAATGTAGAAGATGATAATGAAAAATATAATAA TATGAATACATATATATTAAATAAAAACAATTTAAACCAAGGACATTATAACATATATACTGTTA TATGTAAAGAAATAGGAAAACTCATATTTCCTTATGATATGAATTATATAGATATCTTTGAAGAT ATAAAAGTCGAAAATAAAAATAAAGAAATAATTTATGTAAATATTCATTCGAATCATATATGTTT TATTAAAAAGGACAATATTATTATATTACATCATCCCTCATTTGA Right flanking sequence: Indices 307893 -- 308392 ATCATGTATACCTTAAAAATAATAAAAAAAATATTTCGGATTATGTAAGCAATGAATTTGAGATA AAAAGTACACAAAGTGGACAAATTATTTTAAGCATTTATAAGGATGTACAAAATAATGATGATAT TATATATGAACAAAAAAACAATATAGAGGGAACTAAAGAGAATCCAAAAATTATGTTTGATGATA ATATATATATTTACAAAATAGTTAATTATAAAAAAACAAAAGATATTTTTGTTAAGGTACAGAAA AAGTACAATACTTTTTTTTCTCCAATGTTAGATAATTATGATGAAAAAAATATGGAACAAAATAA ATTTGATCTTTCTATTTTTAAAACCTGCATTAATAATATGGAAAAAATAGATGAACAAGAGAATA AAATAGATAACACAAATAACGAATTCAATGACAGATATAAAAACGAAAATATCGTTGATATGGTT AAACCATATGATGATTTCTGCAAAGAAATAGAGTACAATTATTTT Found at i:307918 original size:9 final size:9 Alignment explanation
Indices: 307906--307925 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 307896 ATGTATACCT * 307906 TAAAAATAA 1 TAAAAAAAA 307915 TAAAAAAAA 1 TAAAAAAAA 307924 TA 1 TA 307926 TTTCGGATTA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20 Consensus pattern (9 bp): TAAAAAAAA Left flanking sequence: Indices 307406 -- 307905 GAAAATAATTTAATTATAAATAGCTTATTCATTAAACCAAACAAAATATATAAATTACAAATAAT ATTTAAGGATAAAAGTCTTAACAATATTACATTTGATAATATAAAAAATGAGAGTAAAAGTTTTA TTAAGAAAGAAGATATAATAAATATAAAACAAAAGGAATGTACAAATAAAGAAAATACAAAATAT TATAATAATGTAGAAGATGATAATGAAAAATATAATAATATGAATACATATATATTAAATAAAAA CAATTTAAACCAAGGACATTATAACATATATACTGTTATATGTAAAGAAATAGGAAAACTCATAT TTCCTTATGATATGAATTATATAGATATCTTTGAAGATATAAAAGTCGAAAATAAAAATAAAGAA ATAATTTATGTAAATATTCATTCGAATCATATATGTTTTATTAAAAAGGACAATATTATTATATT ACATCATCCCTCATTTGAGAAATATGAAATATATCATGTATACCT Right flanking sequence: Indices 307926 -- 308425 TTTCGGATTATGTAAGCAATGAATTTGAGATAAAAAGTACACAAAGTGGACAAATTATTTTAAGC ATTTATAAGGATGTACAAAATAATGATGATATTATATATGAACAAAAAAACAATATAGAGGGAAC TAAAGAGAATCCAAAAATTATGTTTGATGATAATATATATATTTACAAAATAGTTAATTATAAAA AAACAAAAGATATTTTTGTTAAGGTACAGAAAAAGTACAATACTTTTTTTTCTCCAATGTTAGAT AATTATGATGAAAAAAATATGGAACAAAATAAATTTGATCTTTCTATTTTTAAAACCTGCATTAA TAATATGGAAAAAATAGATGAACAAGAGAATAAAATAGATAACACAAATAACGAATTCAATGACA GATATAAAAACGAAAATATCGTTGATATGGTTAAACCATATGATGATTTCTGCAAAGAAATAGAG TACAATTATTTTATACCAATTCAAATATTGTATAAAGTTAAATCA Found at i:309451 original size:10 final size:10 Alignment explanation
Indices: 309432--309451 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 309422 AATTTTATAA * 309432 AAAAAGAAAT 1 AAAAAAAAAT 309442 AAAAAAAAAT 1 AAAAAAAAAT 309452 TATAAAATGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10 Consensus pattern (10 bp): AAAAAAAAAT Left flanking sequence: Indices 308932 -- 309431 AATGTATTCATATGAAAAAAAAAAGAAAAGAGAAGTATTTTTTAGATATGTACCTGATTATAAAA AAGCAATAAATATATATGCTACTAGTATTCAAGTTTATGAAAGCAAATATCACTTTTTAGTAAGT AATAAAGGGAATATAAAATTACTATCCAATTTTTTAATTGAAAATTTAAATATTTCATATATAAT TACTTTGTTCAACAAATATTCATTATTACATAATCAACATGATGAAATAAATATAAATTTGGATA ATATACATTTTAATATATATGAAATATATAAAAAATGTTCAGATGATAAAAAAAGGTTACTATCT AAAATAATATCCTATTTAGAACAATTAGTAGCCTATAAATTCTTGTGTATTATTAAATACTATGG TGAAAAATTAAATTATCTTCTCTTACTTGATCAAATTAATAACGATGGGGATATATATGATATTC AAAGAAAAATCGATTATTTATTTTTTAATAAGTATAATTTTATAA Right flanking sequence: Indices 309452 -- 309951 TATAAAATGAAAAATTGTAGAAACAAAAATGAACTAAATATACATTCTGAGAAACAATGTATAGA CATTTCTTTTAATAATATAAAATATACATATGAAAATATCGTAAAAAAATATGTAAAACAAAAAA AATATATGAATAAATGTTTCTCAGATATAAAACATAATATATATCAGATTAGAAAAAAATATCCT ACTATATATAATTATCCATATTTCCCATTCTTTATTAATAAATCTAATATAATAAAAATTAAATA TGATATAGATCAGCAAATACATTATTGGAATAATTGTCTTACTAACTTTTTTAATAATATAATAG AAAAGTCTTTAACACATATTAATTTAAAATATAACATACGTATAATGAATAATCATATTCTGAAT CATATAAAAGATTCATTATTAATACGGACAAAATATAAGCATATAAAAAATTATAATTTTGCTCA TATAATTATTTCACATCATTTTTTAAATCCACAAGATATACATTT Found at i:310578 original size:8 final size:8 Alignment explanation
Indices: 310565--310582 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 310555 TTTAAAAAAT 310565 AAAAGAAA 1 AAAAGAAA * 310573 AAAAGATA 1 AAAAGAAA 310581 AA 1 AA 310583 TCCAATAATT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06 Consensus pattern (8 bp): AAAAGAAA Left flanking sequence: Indices 310065 -- 310564 ATAAAAATAATGAAACTCATATTATAAAAAATAACGATCACATAATCGATCAATCACAAAATGAT AAATCTTTTTCTACGTCCAATCCATGTAATAATAACAACATGAATGAGAATATACCTTGTACAAA ATTAATACCATGTTATATACAAATAATAAATAGTGACTTACTACTATATATTTTTGACAATCATA ATAATAAAATGTGTTGGAAATTAGGAAAAAAAGATTATAACATTTATGAACAAAGCGAAAATTAC AATGAAGTTACGAATTCACAATGTAACGAAGATCAAATAAAAGATGTTCACACGGATGAACGACA TAATAATATACAACATAATATGAACAATACGATGCAATATAATCCTTGTGTTAATGTAAACAATA ATCATTTTTTATATGACAAAAGAAAAGATACACAAGAAGATCAAGATAATAACTATATTCAAACA TATTCATATGATAAAGATACATCCTCTATACATTCTTTAAAAAAT Right flanking sequence: Indices 310583 -- 311082 TCCAATAATTTTTGTAAGGATGAATATTGTACCTTATTACATGATAATCACTTAAATAACAATAA ATTAAATAAAAATTTATTTTGCTTTACAAAAAATATGAATCACCATTTCTCAAATATATATAACA TTATAAAAAATTATATTAAAAATAAATATGCCCTTTTTCTTTATATATGTAATGCAAAAAGCATA GACAAATATAATTATGAAACAGCTCCCGAATTTGTTAATATATTTATTCAAATAAATTATACATG TGAAGAAAGATTAAGAAATAATCTTACTATAAATGATCATTTGATTGTAAATATAAATAAAAAAA AACAACGATTCTTGGATAAAGGAATCGAGGAAATATTATTAGAGACTTATGAAATATTGAAAAAT GAAAGAGAAGATTATAATATTATGAAGGAAAATAAAAATGTACTTATAGATATAATACCCAATTA TACAAATAATATAAATGAAGTACAAGAAAATAGTTATACAAATAA Found at i:312279 original size:7 final size:7 Alignment explanation
Indices: 312267--312283 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 312257 AAAATTATGA 312267 ACAAAAT 1 ACAAAAT 312274 ACAAAAT 1 ACAAAAT 312281 ACA 1 ACA 312284 GTTATGGCAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.71, C:0.18, G:0.00, T:0.12 Consensus pattern (7 bp): ACAAAAT Left flanking sequence: Indices 311767 -- 312266 TAATAGTTTAATATATGACGGAGAATGGAGAAATTGTGAAAAAAATGGTAAAGGGAAATTATTAT TCAAATATTTTAATATATGGTATTTATATGAAGGTAATTTTTGTAATGATGAAATTGTAGATAAG GGAATTATATCATTAATTGATAAAGAATATGTTAAAAATATAGAATGTAAAAAAATTAATAAATT GTGTCCTTTATTAATTAAAGCAAATTTTTGTAGAAAGGGACAAGGAAAAACTACAAAGGAAGTAC CATCGGAAGTTATAGGGGGGGAAAATATGGCGAATAATATTGAAAATAATGTAGCAAATGATGTA TCAAAAAATATTGAAAACAATGTAGCAAATGATGTATCAAAAAATATTAAAAATAATGTAGCAAA TGATGTATCAAAAAATATTAAAAATAATGTAGCAAATAATGTAGTGAATAACCTAACGAATAATA TAGATAAGAAAAAAGGCAAAAAAAAATTTACCAAAAAAATTATGA Right flanking sequence: Indices 312284 -- 312783 GTTATGGCAAATTATAGCTATACAAATAACGTCGATTGTTGGTCTAAAGATATTATTGATATATA TATGCCTTATTTGAAAAAGTGGAATATATATTCATTTTATTGTTCAAGTAATATGGAAAATATTA ATAAAAGGAAAGATATATTTTCAAATAATAATAGTAAAAATAATGATAATTACAATTTTAAACAT CTTATTGGTTATCCTTCTTTTGAGCTTGTAGATGGAGACACCACAGAAAATAAGTTAGAATGTTA TAAATTGGAAAACGATACAAATTTAGCAAAGACACATATAAATGACGAATTAGGAGAAAACAAAA AACAAATTAAAGAGAATTACGAAATATATAATCATGTGTTGAACAGTGGAATATCTTCTATTATA CAAAAGGATACAAACAATAATGACCATATGGATAATATTGATAAAATAACAACAACAAAAAAAAA AACATTTCTAGGGAATGATAAATGTAATATGAATGTTCATATCGT Found at i:312612 original size:7 final size:7 Alignment explanation
Indices: 312600--312614 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 312590 GAATTAGGAG 312600 AAAACAA 1 AAAACAA 312607 AAAACAA 1 AAAACAA 312614 A 1 A 312615 TTAAAGAGAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00 Consensus pattern (7 bp): AAAACAA Left flanking sequence: Indices 312100 -- 312599 TATTGAAAACAATGTAGCAAATGATGTATCAAAAAATATTAAAAATAATGTAGCAAATGATGTAT CAAAAAATATTAAAAATAATGTAGCAAATAATGTAGTGAATAACCTAACGAATAATATAGATAAG AAAAAAGGCAAAAAAAAATTTACCAAAAAAATTATGAACAAAATACAAAATACAGTTATGGCAAA TTATAGCTATACAAATAACGTCGATTGTTGGTCTAAAGATATTATTGATATATATATGCCTTATT TGAAAAAGTGGAATATATATTCATTTTATTGTTCAAGTAATATGGAAAATATTAATAAAAGGAAA GATATATTTTCAAATAATAATAGTAAAAATAATGATAATTACAATTTTAAACATCTTATTGGTTA TCCTTCTTTTGAGCTTGTAGATGGAGACACCACAGAAAATAAGTTAGAATGTTATAAATTGGAAA ACGATACAAATTTAGCAAAGACACATATAAATGACGAATTAGGAG Right flanking sequence: Indices 312615 -- 313114 TTAAAGAGAATTACGAAATATATAATCATGTGTTGAACAGTGGAATATCTTCTATTATACAAAAG GATACAAACAATAATGACCATATGGATAATATTGATAAAATAACAACAACAAAAAAAAAAACATT TCTAGGGAATGATAAATGTAATATGAATGTTCATATCGTGTATGAAAAAAATTTATTACAAGATG AATTTATTGATTCGATGAAAAATATAAACGAAGATAAGTTGTATTATCCAATAATAAACAAATGT ATAGGATTGACAAAAATAATATATGCTGATAAAAGTGAATATTTTGGAGCTGTTAATGATAGAGG ACAACCAAACACAAATGAAAAATATCCAAAAGCATTTTTTAATAATGAATATTTTTTTTATGAAG GAGAGATGAAAAATTTTTTACCTAATGGATATGGAATATTTAAAAATAAAGAAAAGGATAAGAAT ACATATATAGGTTATTGGAGTAATGGATATAGACAAGGTAATGGA i:312716 original size:9 final size:9 Alignment explanation
Indices: 312699--312717 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 312689 AATAATGACC 312699 ATATGGATA 1 ATATGGATA * 312708 ATATTGATA 1 ATATGGATA 312717 A 1 A 312718 AATAACAACA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37 Consensus pattern (9 bp): ATATGGATA Left flanking sequence: Indices 312199 -- 312698 AGTGAATAACCTAACGAATAATATAGATAAGAAAAAAGGCAAAAAAAAATTTACCAAAAAAATTA TGAACAAAATACAAAATACAGTTATGGCAAATTATAGCTATACAAATAACGTCGATTGTTGGTCT AAAGATATTATTGATATATATATGCCTTATTTGAAAAAGTGGAATATATATTCATTTTATTGTTC AAGTAATATGGAAAATATTAATAAAAGGAAAGATATATTTTCAAATAATAATAGTAAAAATAATG ATAATTACAATTTTAAACATCTTATTGGTTATCCTTCTTTTGAGCTTGTAGATGGAGACACCACA GAAAATAAGTTAGAATGTTATAAATTGGAAAACGATACAAATTTAGCAAAGACACATATAAATGA CGAATTAGGAGAAAACAAAAAACAAATTAAAGAGAATTACGAAATATATAATCATGTGTTGAACA GTGGAATATCTTCTATTATACAAAAGGATACAAACAATAATGACC Right flanking sequence: Indices 312718 -- 313217 AATAACAACAACAAAAAAAAAAACATTTCTAGGGAATGATAAATGTAATATGAATGTTCATATCG TGTATGAAAAAAATTTATTACAAGATGAATTTATTGATTCGATGAAAAATATAAACGAAGATAAG TTGTATTATCCAATAATAAACAAATGTATAGGATTGACAAAAATAATATATGCTGATAAAAGTGA ATATTTTGGAGCTGTTAATGATAGAGGACAACCAAACACAAATGAAAAATATCCAAAAGCATTTT TTAATAATGAATATTTTTTTTATGAAGGAGAGATGAAAAATTTTTTACCTAATGGATATGGAATA TTTAAAAATAAAGAAAAGGATAAGAATACATATATAGGTTATTGGAGTAATGGATATAGACAAGG TAATGGATGCTTACATTTAAAAAATAAAAAGTATATTATACAAGGAAGATTTTATAAAGATGAAA TTAAAGATCATATTAATATTTATATAAGAGATGATAAAATATCTA Found at i:314698 original size:9 final size:8 Alignment explanation
Indices: 314684--314703 Score: 31 Period size: 9 Copynumber: 2.4 Consensus size: 8 314674 AAATTATAAA 314684 AAATATGAT 1 AAATAT-AT 314693 AAATATAT 1 AAATATAT 314701 AAA 1 AAA 314704 AAAACAAATT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 8 5 0.45 9 6 0.55 ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30 Consensus pattern (8 bp): AAATATAT Left flanking sequence: Indices 314184 -- 314683 GTCTCATCCTACTAACGTATTTCATTTTATTATAATCATTATTATTTTTTTTTTTTTCTTTTATT ATTTATTCTTTTTATGTGCGTGCTTTTTCCTATCTCTAGTTGTAAGTTGACTAAATTTTTTCATA AGGAACAACGTTTTATATATCATATATTTTTATATTATATTCATGTTTTTACTTGATCTTACAAA AACTTGATCTCTACACATATATAAAAATATTATATACATATAAATATATACATATATATGTATTA ATATATACAACGTTTCATATGCATTTTTTTCTATATATAAAACATTTTTAGTTTCATATTCTTCA ATTTTTTTTTCTTTTTTTTTCTTGTATTTTCATTCATTCTATTTTACTATTATTATGTTCTTTTT GTTTTATTTTATTTTATTCTATTTTATTTATTTATATTTTTTTTTGACCCCTAAGTGATTTCACA TTTCAAAATATTCGAATAGACCGAAAGAACCAAATAAATTATAAA Right flanking sequence: Indices 314704 -- 315203 AAAACAAATTATAATTTTGTTATATCCTTATATCATTAAATAATATATATTATCGAAAAAAAAAA AAAAAAATCTTTATGCTTATTTTTTATCACCTTATAAATAAAGTACATCAATTTAAAAGTATAAT ATTTAAAAAAAGAAAAATATTTACAAAAAAAAAAAAAAAAAAAATTGAAATAAAAATAATAAATT AAATAATAATAAAAGAAAAAAAAAAAAAGAAAAAAGAAACAATATTTATAGTATAATAATAATAT TCACTATTGAATTCCCCATTTTACATTTTTCACTATAAATATGTATACATTCATAATATACACCA ATTATTTATATGAAAAAATATTACAACATTATAATAATTAACAATAAAATAAGATAAAGGAAATG TTAACAACAATATATAGAAATTTTTATTAATTATATGAGCATATTATTCTGAATATTTTTTTCTC ACCTCATTTTAAATTAAAATGTTCGTATAAAACTACTATACATAT Found at i:315899 original size:9 final size:10 Alignment explanation
Indices: 315880--315899 Score: 33 Period size: 9 Copynumber: 2.1 Consensus size: 10 315870 GAAGCTGAAC 315880 TATAGTATCA 1 TATAGTATCA 315890 TATA-TATCA 1 TATAGTATCA 315899 T 1 T 315900 TATCTCTCCA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 9 6 0.60 10 4 0.40 ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45 Consensus pattern (10 bp): TATAGTATCA Left flanking sequence: Indices 315380 -- 315879 ATTTTCTTACCATTAGGATATAATCTAGCAAATTCACCAATATCAAAACAAGCAACGGCAACTGT TACTGCGTCTATTTCTTCTTTACTTTCACCGGTTTCACTTTTCTGAATAATATTATGAGCATATA ATTTTATTATATCAGCTAATTGCTGAATTGCCTTAAATTCATCCTTTTCAAATTGCATGACATTT TCTAGCCAAAATTTTTCTGTATGTAAAACGGACCACTTCAATTTTCCGTTGGATAATTCGTGGCA ATATCTTTCAAAATTGCTGCAGAGAAGAATGAACATATATATATATATATAATAAATAAATATAA AACAACATAATAATAATATATAAATATAAATATAAATATATATATATATATATCTTTGTTTACAC AGAAAAAATTGATTTATATACATAAATATATAAATACATATATATATATATATATATTTTTTTTA CCTATAATTTTTGATCCTTTGGTCTAACTTGTTCAGAAGCTGAAC Right flanking sequence: Indices 315900 -- 316399 TATCTCTCCACTTATCATACTGCAAAACTGTCATAGTTTGAATAATATTATTATCAACTATTATT TCGAAACAATCATCAATATGCATAATATTTTTTATTATATTAAGTGAAACTCTTAAAATTTTTTC TACTCTACATTTTTTAAATAGATTGATTACTATAGCAATAATATTATTCTTATATAATTGTTTAA TGAAATAATCTTTAAAGGTTAGTAGCCATACACAAAATACAGATTTATATTGCTTATTAGCATTA TTATTAGATAGCTCTAAATTTTTTTTTATAATAGATGTAAATTGTTCTAATTCATATATATCCTT TCTAAAATTATCAATTTTTAATATATTTATATATATATCCATTTTTCCTTCTTCACTAACATTAA AGAAATCGATTTTTATAATAAATTCTTTTATTTGTACTTCAGTAAAATAATTATTATTATAACAA AAACTACCTGACAATAAAAACGAACTCTTATCAGCTATATACGTA Found at i:316260 original size:10 final size:9 Alignment explanation
Indices: 316241--316260 Score: 31 Period size: 10 Copynumber: 2.1 Consensus size: 9 316231 ATTATCAATT 316241 TTTAATATA 1 TTTAATATA 316250 TTTATATATA 1 TTTA-ATATA 316260 T 1 T 316261 ATCCATTTTT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 9 4 0.40 10 6 0.60 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (9 bp): TTTAATATA Left flanking sequence: Indices 315741 -- 316240 TATATATATATATATATCTTTGTTTACACAGAAAAAATTGATTTATATACATAAATATATAAATA CATATATATATATATATATATTTTTTTTACCTATAATTTTTGATCCTTTGGTCTAACTTGTTCAG AAGCTGAACTATAGTATCATATATATCATTATCTCTCCACTTATCATACTGCAAAACTGTCATAG TTTGAATAATATTATTATCAACTATTATTTCGAAACAATCATCAATATGCATAATATTTTTTATT ATATTAAGTGAAACTCTTAAAATTTTTTCTACTCTACATTTTTTAAATAGATTGATTACTATAGC AATAATATTATTCTTATATAATTGTTTAATGAAATAATCTTTAAAGGTTAGTAGCCATACACAAA ATACAGATTTATATTGCTTATTAGCATTATTATTAGATAGCTCTAAATTTTTTTTTATAATAGAT GTAAATTGTTCTAATTCATATATATCCTTTCTAAAATTATCAATT Right flanking sequence: Indices 316261 -- 316760 ATCCATTTTTCCTTCTTCACTAACATTAAAGAAATCGATTTTTATAATAAATTCTTTTATTTGTA CTTCAGTAAAATAATTATTATTATAACAAAAACTACCTGACAATAAAAACGAACTCTTATCAGCT ATATACGTATCACTATGTGTACATAACTTCATCAAATATCCATACATGTCTTTATCATGTAATAT ACCTAATATATAACTATAAGAACTTCCATCATTTCTTATTATTTCATAAAATATTGTTAATACAT ATTGCATTAAATGAAGATTGAAATCTGTTTGTAAACAATTAAATAATATTGATACTATAGTATCG TTTTCTTTAAAATATTCATATTTTTCCTTTTTACTAAAATCATGAAACTTTTTTAATAACCCTAC TTCTTCAACTGACAAAATATTGATCTCTTCATATTTATCATAACAAGGCATCTTATTCAAAATAG AATCATGTAATATCTGAATATAAAAAAAAAAAAAAAAAAAAAAAA Found at i:318056 original size:9 final size:9 Alignment explanation
Indices: 318044--318062 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 318034 TAACATATCG 318044 ATTAATTTT 1 ATTAATTTT * 318053 ATTATTTTT 1 ATTAATTTT 318062 A 1 A 318063 AACGAATAGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68 Consensus pattern (9 bp): ATTAATTTT Left flanking sequence: Indices 317544 -- 318043 ATATATATATATATATATATAATTGTATGTATGTATTTTTGTATATATATATATATATGTATGGA GAAATACTCTTTAAAAAAAAAAATAAATAAAATAATCATATAAATATTAAATAATATTTATAAAA TAATAATTAAAAAAATATATTATATATAAGGAATATATTTTTTGAATATCTTTACAAACTACTAT TATTTTATTAAATATTTATAAAAAAAAATGATGAATTGTGTGTAATATTACATATTATAAAGTAA AAAAAAAAAAAAAAAAAAAAGTTACGCCTTCATAACGAATATATCATGAATACAAATTATTTACC AATTACATGAAAATAAGAAATCTTTATTTTATTTATAAGAAGGTACTACTACAATTTCATTATTT AATATAAAAACATAATGGATTATATAAAATTAGATAACTCTTTTCAAATTATTTTTTTTTTTAAA GGTGATAAAACACACGATTTAGAAATGTATATATCTAACATATCG Right flanking sequence: Indices 318063 -- 318562 AACGAATAGTTTTCTATAATACTATATATATATATTATATATATATATATAAGCATATTTTACGT TTGTTAAACAAAAAAAAGGAAAATTAAAAAAATAATAACTAAATTAATAAACAAGTGCATATATA TATATATATATATATATATATATATATATATATATATATGTATATTTTATTTTTTCATTTAAATA TCCGTTAAAAAATAAATATATGTTGTCCACATTTAAGTTTTAACTTGTTTATATTATATATAGTC AAAAGGAAAGCAAAAAAATGAAATAACCATAAAATACGGTACAAAATATACAATATTATATATAT ATATATATATATATATATATATTATTAAATTAAAAATGTGGATCAGTTTTTTATCGGTAACATGT TTATTTTCACAGTGTATTTTTTATTTCTTATACTGAAATAATCCAGGCTTAACATTTTTTTTCTT TTTTCTTTTTTATTTTTCATCCTTTTCTTTTTCTTTTATTTTTTT Found at i:318483 original size:7 final size:7 Alignment explanation
Indices: 318467--318483 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 318457 TTTCACAGTG * 318467 TATTTTT 1 TATTTCT 318474 TATTTCT 1 TATTTCT 318481 TAT 1 TAT 318484 ACTGAAATAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76 Consensus pattern (7 bp): TATTTCT Left flanking sequence: Indices 317967 -- 318466 ATAACTCTTTTCAAATTATTTTTTTTTTTAAAGGTGATAAAACACACGATTTAGAAATGTATATA TCTAACATATCGATTAATTTTATTATTTTTAAACGAATAGTTTTCTATAATACTATATATATATA TTATATATATATATATAAGCATATTTTACGTTTGTTAAACAAAAAAAAGGAAAATTAAAAAAATA ATAACTAAATTAATAAACAAGTGCATATATATATATATATATATATATATATATATATATATATA TATATGTATATTTTATTTTTTCATTTAAATATCCGTTAAAAAATAAATATATGTTGTCCACATTT AAGTTTTAACTTGTTTATATTATATATAGTCAAAAGGAAAGCAAAAAAATGAAATAACCATAAAA TACGGTACAAAATATACAATATTATATATATATATATATATATATATATATATTATTAAATTAAA AATGTGGATCAGTTTTTTATCGGTAACATGTTTATTTTCACAGTG Right flanking sequence: Indices 318484 -- 318983 ACTGAAATAATCCAGGCTTAACATTTTTTTTCTTTTTTCTTTTTTATTTTTCATCCTTTTCTTTT TCTTTTATTTTTTTCATGAACTGCCAAATTAATGAAATACCTAAATAATAATATATATATATATA TATATATGTATTATATTTTTATAGTATTTTATTTTTTTTTATTTATTTACTTGTATTGTGAAGGA GCTTGCAAAATGAAAAATCTATCATTCTTCCTATACGCTTGTATAGACCTTCAATAAAAAAGAAA AAAAAAGAAGAATTTTTTTAATTCATCTTATAGGAATGTTAAAAAAAATATAAAATGAACATATA AATAAATAAATATATATATATATATATTTTTTTTTTTTTAAATAATACTTTATAATTCTTCCCAT GAAAAGGGTCTCATTCAATTTTAGTAACGTAACAACATCCTTCAAAATAATGAAGTAAATACATA AATATATAAATGTATCAATAAATAAAAATATAATTCAATAAATAT Found at i:321846 original size:8 final size:8 Alignment explanation
Indices: 321829--321846 Score: 29 Period size: 7 Copynumber: 2.4 Consensus size: 8 321819 ATATTATTTA 321829 TTTTCATT 1 TTTTCATT 321837 TTTTC-TT 1 TTTTCATT 321844 TTT 1 TTT 321847 CTGAACTTAT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 7 5 0.50 8 5 0.50 ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83 Consensus pattern (8 bp): TTTTCATT Left flanking sequence: Indices 321329 -- 321828 AAAAATGTCAATATCATCATCCTCCGCTTGAACTTGACTAACTAAATTTGGATCTGAAAAGTTAT TTGTTAAGGGTCTCCTGGATAACCTTTCACTTTTTTTTTTTTTCTTATTTTCCATATGCCATTTA AAACATGCACCGATTTCATTTAAAAATGAATTTTTCAAATAATAAGTATGATGGTTTTTTATATG ATCAACATTATAAATATATTTAATTGGTATATCATTTTGATCAATATCCATATCTATATTATATT TATAATTTACTGAATGAATATTTTTATTATAATTTTTGAACTTCATATTATTTATAATATTTTCA TATATACCATTGATTTTATCCTTGAAATGTATATGATGTGGGTGTTCAAATAAAAAAAAATATTT GAAAATATATTTTGATTCTTCATTTATAAAACTTGTAGTTGATGACAATGATAACGATCTATTAG TTAATACATTTTCACCACTTGTAATATATTTATTAATATTATTTA Right flanking sequence: Indices 321847 -- 322346 CTGAACTTATTTTATCAATTAATTTATTTCTAACTTTATTCAATAATAAAAAATCAAGACCCTTT ACTAAATGTGTATGTTCCTCATCTCCACCCATAAATTTTGATTCATCAATAGTATTGTTTATATT ATTATATAAAACACTTTCATCTTTAACATCTTTTAATATACCTTTTCTTCTTTCTTCTGCTCGAT CTCTATACTTTTGATTTTCATTTTTCTCTTCATTTTTTTTTTTTTTAATTAAATATTTTTGTTTC CTTTTCAATTTCTTTTCTTCTTTTAATAATGCATCGTTTTCCTTCTCTTTTTTTTCCTTTTCGAA ATTATCAAAAATACGACGAAAGTCGTTATTAGTTAATTCGGTAGACATTTTATCCTTTTACAAAA ATATTATATTGTACATTATTAGTTCATATTAATATGTTTTTCTTTTTTTTTTTTTTTCTTTTCTT CTCTTTTTTTAATTTATAAAAAAATGGACAAATTTATATTTACAT Found at i:322032 original size:7 final size:7 Alignment explanation
Indices: 322020--322034 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 322010 TAATATACCT 322020 TTTCTTC 1 TTTCTTC 322027 TTTCTTC 1 TTTCTTC 322034 T 1 T 322035 GCTCGATCTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73 Consensus pattern (7 bp): TTTCTTC Left flanking sequence: Indices 321520 -- 322019 TATGATCAACATTATAAATATATTTAATTGGTATATCATTTTGATCAATATCCATATCTATATTA TATTTATAATTTACTGAATGAATATTTTTATTATAATTTTTGAACTTCATATTATTTATAATATT TTCATATATACCATTGATTTTATCCTTGAAATGTATATGATGTGGGTGTTCAAATAAAAAAAAAT ATTTGAAAATATATTTTGATTCTTCATTTATAAAACTTGTAGTTGATGACAATGATAACGATCTA TTAGTTAATACATTTTCACCACTTGTAATATATTTATTAATATTATTTATTTTCATTTTTTCTTT TTCTGAACTTATTTTATCAATTAATTTATTTCTAACTTTATTCAATAATAAAAAATCAAGACCCT TTACTAAATGTGTATGTTCCTCATCTCCACCCATAAATTTTGATTCATCAATAGTATTGTTTATA TTATTATATAAAACACTTTCATCTTTAACATCTTTTAATATACCT Right flanking sequence: Indices 322035 -- 322534 GCTCGATCTCTATACTTTTGATTTTCATTTTTCTCTTCATTTTTTTTTTTTTTAATTAAATATTT TTGTTTCCTTTTCAATTTCTTTTCTTCTTTTAATAATGCATCGTTTTCCTTCTCTTTTTTTTCCT TTTCGAAATTATCAAAAATACGACGAAAGTCGTTATTAGTTAATTCGGTAGACATTTTATCCTTT TACAAAAATATTATATTGTACATTATTAGTTCATATTAATATGTTTTTCTTTTTTTTTTTTTTTC TTTTCTTCTCTTTTTTTAATTTATAAAAAAATGGACAAATTTATATTTACATTCAAAAAAAATTA CATAAAATATATGAATTAATAAATTATATATACATTAGCCAAAATATAAATATATAATATAAATC AAATATAATATTATTACAAAAAAAAAAAAAAAAATTAAATACATAGATCGGTATTATATTCATAT ATAAATATAATATATATATATATATATATTTACATGTATATATTT Found at i:323121 original size:7 final size:7 Alignment explanation
Indices: 323109--323126 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 323099 ATAATTACCA 323109 TATTTTT 1 TATTTTT 323116 TATTTTT 1 TATTTTT 323123 TATT 1 TATT 323127 GAATGTCATT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83 Consensus pattern (7 bp): TATTTTT Left flanking sequence: Indices 322609 -- 323108 TATAATCATTATTTTGTGTGATGATTTTATATATATAATATAATTATATATATGTATATTATCTT ATTTTATGTTTCCATTTTTTTTTTTTTTTTTTTTTGTAAAATCATTTTTATGTTTTGAAATTGAA ATTTTTATTTGAATATTAATATAATATATAAAATGAGATTAAACTTTTAATTTAGATAAAATTCT AAAGTATATAATTCTTTTTTTTATATTTTAACATACATTTTTAAATGTACATATATATATATATA TATATATATATATAATATAATATTAATATAATATTGATAATATATAATATATATATATTATCTTC TATTGAGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTAATACTTTATAGTTAT AATAAGCATAATACTTAATATATATTTTTTTTAAGATTTTTCTCAAGTTATTTTTTATTTAAAAA ATATATATATATTTATATTTTATAAACCCCAAATGATAATTACCA Right flanking sequence: Indices 323127 -- 323626 GAATGTCATTTTTTAAAATTATACGAAATAATTATTATTATAATCTTATAAAATATTTTTTAACC ATAACATTAATACTCGTAATATATATATATATATATATATATATTATTAATAAGAGGTAAAGAAA TGTACCAGAATGTAAACATTTCTAATGACATATATTAAATTATTATATAAATTAAAGCTTCATGG AATAATGTAGATTTTAATCAGAATTTTACAGATAAGTTTCGAATTTATCTACATTGTGAAAATAA AATATGTTATACGTAAAGATATATACAAATTCATCAATTAAATAAATATATATATATATATATAT ATATATATATATATTTATGTAATTATTTTTTTATTAACTCCTAATTAAATTTCAATTCTTATATT CTCAAGCATAATAAACAAAATATATAAGTGCTTTATAACACAAAGTAGAATCATCTTTTTATTTT ATTTTATTTTATTTTTTTTTTTTTCTTTTTGTTTCACATAACAAA Found at i:324267 original size:9 final size:9 Alignment explanation
Indices: 324250--324268 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 324240 ATGAAATGAA 324250 AAAAAATTT 1 AAAAAATTT * 324259 AAAAGATTT 1 AAAAAATTT 324268 A 1 A 324269 TTTAACACAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32 Consensus pattern (9 bp): AAAAAATTT Left flanking sequence: Indices 323750 -- 324249 GCTTTAAATAACCCAAATGACTATCTTGACAAAAATACAAATTTTACAAATGCACACTTTAAACC TTCAAGTTACGTGAATGGTGCAGGTAAAAACATGGACAGTGCAGGTAATATCATACCAAATATAA ATAATAATATTCAATATCATATGCCAATTCCTAATAATATGCCTTATGGAGTTAATCCAAATTAT AATATTCATAATAATAAAATGATAAATAATCCAAAAAACATGTATAATGCTCCGTACCCATTAAA TATGAATACTATACCAATTAATTCATATGGAGGAGCCGAAAAGTTTACACATTCTGTACGAATAC CTATATACCCAACCCCACAAAATATGTTATATAATACCATGAATTATATGAACAGTAAAGCATAT ATAAAACATTTGAAATATAATAAAGTTATACCAACTGACCCAACCATACCTCCAAATGAAACATT GTATATAAAAAATTTGAATGATAGAGTAAAGACAGATGAAATGAA Right flanking sequence: Indices 324269 -- 324768 TTTAACACATACGGAGAAATAAAAGATTTAATAGTTATGAAATCATTTTGGAGAAAAGGTCAGGC ATGGGTTGTATATGATGACAAAGAATGTGCTACTAAAGCTTTAAATGCACTACAGGGGTATGTGT TATTTGGTAAGATTATGCAAATTAATTTTTCACATAATAAAAGTGATATACATGCCAAAAGAGAT GGTACTTTTGTGGAGAGATCAAAAGAACCTAAAAAACCAAAAAAAATACTTGAAAGAGAACAAAA ACAAAAAGAAATTTTTGAACAAATGCATAAAAATTATTTAGAAATGCAAAAAAATAATTTTAATA TGCTTAATGGTAATAAAGAAATAAATAAACCTGAAATTATAGATTTAAGTCAAATGGATAAACAA ACACTTATTGCAAAAGCTCAAGCAAAAGCAAATGAAGATAAAAATAAAAAAAATGAAGAATTACC AAATAATAATATATTCTCATCTTATTATCAAATGAATAATATTGC Found at i:325089 original size:9 final size:9 Alignment explanation
Indices: 325075--325098 Score: 48 Period size: 9 Copynumber: 2.7 Consensus size: 9 325065 TTGATAAGCC 325075 AAAAAATAA 1 AAAAAATAA 325084 AAAAAATAA 1 AAAAAATAA 325093 AAAAAA 1 AAAAAA 325099 AATAACATAG Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 15 1.00 ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08 Consensus pattern (9 bp): AAAAAATAA Left flanking sequence: Indices 324575 -- 325074 CAAAAAAATAATTTTAATATGCTTAATGGTAATAAAGAAATAAATAAACCTGAAATTATAGATTT AAGTCAAATGGATAAACAAACACTTATTGCAAAAGCTCAAGCAAAAGCAAATGAAGATAAAAATA AAAAAAATGAAGAATTACCAAATAATAATATATTCTCATCTTATTATCAAATGAATAATATTGCC CCAGTTCAAAATTACCCGGTTGTTATGCCATATAAAATTTTATTTGTTGAAAATGTAGTAGAAAA TGTTGATACACAAGCTTTTAATGACTTATTTAAAAATTATGCTGGATTTGTTGAGGCTAGAATTA TACCTCAGAGAAATGTTGCATTTGTGGATTTTACTGATGAAACCACAGCAACTTTTGCAATGAAA GGTAACAGGAAAAATTATAAAAAAAAATGATTGTTTAAAAAAAATATAGTGTACACATATATTTG TATTATATATATGTATGCATATCAAATTGTTTAATTTGATAAGCC Right flanking sequence: Indices 325099 -- 325598 AATAACATAGCATATATGTGTTTATATATATATTATTCATTAAATTATTTATTTTATTTTATTAT TTTTTATTTATAGCTGTACAAAATTATGAATTGCAAGGATCCAAACTGAAAATATCATATGCCAA AAGATAGTATACATTAAAATGGATAAAGGAAATAAAATATATATTCAAATTTATATATTTTATTT GCTTTCGATATGTTATTTCATATTATTTTATTTTGTTCTAATTTTTTTTTTCAATTAAATTTGTT TTGTTATTATATTTATTTTTTATTTGCTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTATGT AGTTTTTTTATTTAAATTATAAATAGATTTCCACAATACATTCATCTAAAAATAAAAATAAAAAT GAAAATAAAAATGAAAATGAAAAATGGTATGTATATATATATATATATATATATATATATTATAA ATAAATATGTTCACAAGCTGAGACACTAAAATAAAGAATAACAAT Found at