TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: ref|NC_001143| [org=Saccharomyces cerevisiae] [strain=S288C] [moltype=genomic] [chromosome=XI] Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 666454 ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31 Found at i: i:104207 original size:5 final size:5 Alignment explanation
Indices: 104197--104210 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 104187 GAAAAGTTTT 104197 CAAGC CAAGC CAAG 1 CAAGC CAAGC CAAG 104211 GAATGGTTGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.43, C:0.36, G:0.21, T:0.00 Consensus pattern (5 bp): CAAGC Left flanking sequence: Indices 103697 -- 104196 CAAAATCCAATGCAAAAACCAGTGCCTTTTGTTCCAGTTTTGGATCGTAGATTCGAGATTTTTTT CAAAAAAGATTCGTTATGGCAATCTGAGCACTTGGAAGCCGTCGTCGACCAAGACGTTCAAAGAA CATGTATCCTACATGGACCTGTTGCAGCACAATTCACTAAAGTCATCGATGAACCAATTAAGAGC ATTATGGATGGTATTCACGATGGTCACATCAAAAAGTTACTACATCAATATTACGGTGACGATGA GTCAAAGATTCCAGCAGTTGAGTACTTTGGTGGTGAAAGCCCTGTAGACGTACAAAGTCAAGTTG ATTCTTCCTCTGTATCTGAAGACTCAGCTGTTTTTAAGGCAACATCCTCTACTGATGAAGAAAGC TGGTTTAAGGCTTTGGCGGGATCCGAAATTAACTGGAGACATGCAAGTTTCTTATGTTCCTTTAT CACTCAAGATAAAATGTTTGTTTCTAACCCAATTAGAAAAGTTTT Right flanking sequence: Indices 104211 -- 104710 GAATGGTTGTTGAGATTTCCAACGGCAATACTTCTTCAAAGACTGTTGTCACTCTTTCAGAACCT GTTCAAGGTGAATTGAAACCAACTGTTATTTTGAAGTTGTTGAAGGAGAACATAATCCAAATGGA AATGATTGAGAACAGAACTATGGATGGTAAGCCCGTCAGCTTGCCATTGTTGTACAACTTCAACC CAGATAATGGTTTTGCTCCAATCTCTGAAGTTATGGAGGACAGAAACCAAAGAATTAAGGAAATG TACTGGAAATTATGGATTGATGAGCCTTTCAATTTGGACTTTGACCCAAGAGATGTCATTAAGGG CAAAGATTTCGAGATCACCGCTAAAGAAGTTTATGACTTTACACACGCTGTTGGAAACAATTGTG AAGACTTCGTTTCTAGACCTGATAGAACGATGTTGGCCCCAATGGACTTTGCTATTGTTGTCGGA TGGAGAGCCATCATCAAGGCCATTTTCCCTAATACGGTCGATGGT Found at i:105083 original size:6 final size:6 Alignment explanation
Indices: 105074--105088 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 105064 TTTGACTTTC 105074 GAAACT GAAACT GAA 1 GAAACT GAAACT GAA 105089 GTTACTTTCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.53, C:0.13, G:0.20, T:0.13 Consensus pattern (6 bp): GAAACT Left flanking sequence: Indices 104574 -- 105073 TTACACACGCTGTTGGAAACAATTGTGAAGACTTCGTTTCTAGACCTGATAGAACGATGTTGGCC CCAATGGACTTTGCTATTGTTGTCGGATGGAGAGCCATCATCAAGGCCATTTTCCCTAATACGGT CGATGGTGACTTATTGAAGTTGGTTCATTTGTCTAACGGCTACAAGATGATTCCTGGCGCTAAGC CACTGCAAGTTGGTGATGTTGTTTCAACTACTGCTGTTATTGAATCTGTCGTCAACCAACCTACA GGAAAGATTGTCGATGTGGTAGGTACATTATCGAGAAATGGCAAGCCTGTCATGGAAGTCACCTC CTCATTCTTCTACAGAGGCAACTATACTGACTTTGAAAACACTTTCCAAAAGACTGTTGAACCTG TTTATCAAATGCACATCAAAACTTCTAAAGATATAGCTGTCTTGCGCTCTAAGGAGTGGTTCCAA TTGGACGATGAAGACTTCGATCTGTTAAACAAAACTTTGACTTTC Right flanking sequence: Indices 105089 -- 105588 GTTACTTTCAAGAATGCTAACATCTTCTCTTCAGTGAAATGTTTTGGCCCAATTAAAGTTGAATT GCCAACCAAAGAAACCGTGGAGATCGGTATTGTCGATTACGAAGCCGGTGCCTCTCACGGTAACC CTGTTGTTGATTTCTTGAAGAGAAACGGTTCCACATTGGAACAAAAGGTCAATCTAGAAAATCCT ATTCCAATTGCAGTACTTGATTCGTACACTCCAAGTACCAACGAACCATACGCTAGAGTTTCTGG TGATTTGAATCCAATTCACGTTTCACGTCATTTTGCCTCTTACGCAAACTTGCCAGGTACTATCA CGCACGGTATGTTTTCTTCTGCTTCCGTCCGTGCTTTGATTGAAAACTGGGCTGCTGACAGTGTT TCATCCAGGGTACGTGGCTACACTTGTCAATTTGTTGACATGGTTTTGCCTAACACTGCTTTGAA AACATCGATTCAACATGTTGGTATGATCAATGGTAGAAAATTGAT Found at i:105707 original size:6 final size:6 Alignment explanation
Indices: 105698--105710 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 105688 ACAAGAACAA 105698 GGTATG GGTATG G 1 GGTATG GGTATG G 105711 ACTTATACAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.54, T:0.31 Consensus pattern (6 bp): GGTATG Left flanking sequence: Indices 105198 -- 105697 CCGGTGCCTCTCACGGTAACCCTGTTGTTGATTTCTTGAAGAGAAACGGTTCCACATTGGAACAA AAGGTCAATCTAGAAAATCCTATTCCAATTGCAGTACTTGATTCGTACACTCCAAGTACCAACGA ACCATACGCTAGAGTTTCTGGTGATTTGAATCCAATTCACGTTTCACGTCATTTTGCCTCTTACG CAAACTTGCCAGGTACTATCACGCACGGTATGTTTTCTTCTGCTTCCGTCCGTGCTTTGATTGAA AACTGGGCTGCTGACAGTGTTTCATCCAGGGTACGTGGCTACACTTGTCAATTTGTTGACATGGT TTTGCCTAACACTGCTTTGAAAACATCGATTCAACATGTTGGTATGATCAATGGTAGAAAATTGA TAAAGTTTGAAACTAGAAATGAAGATGACGTTGTAGTTTTGACTGGTGAAGCCGAAATTGAACAA CCTGTTACTACCTTCGTTTTCACTGGTCAAGGTTCACAAGAACAA Right flanking sequence: Indices 105711 -- 106210 ACTTATACAAAACTTCTAAAGCTGCTCAAGATGTTTGGAATAGAGCTGACAACCATTTCAAGGAC ACTTATGGTTTCTCTATCTTAGACATTGTCATTAACAACCCAGTTAACTTAACAATTCACTTCGG TGGTGAAAAGGGTAAGAGGATCAGAGAAAACTATTCTGCTATGATCTTTGAGACTATCGTGGATG GAAAATTGAAGACTGAAAAAATTTTCAAGGAAATTAATGAGCACAGTACTTCTTACACATTTAGA TCTGAAAAAGGTTTATTGTCTGCTACTCAATTTACACAACCAGCTTTAACTTTGATGGAAAAAGC TGCTTTCGAAGACTTGAAATCTAAAGGTTTGATCCCAGCCGATGCTACTTTTGCTGGTCACTCTT TAGGTGAGTATGCTGCTTTGGCCTCTTTGGCTGATGTTATGTCTATCGAATCTTTAGTTGAAGTT GTGTTCTACAGAGGTATGACTATGCAAGTTGCTGTTCCAAGAGAT Found at i:110259 original size:5 final size:5 Alignment explanation
Indices: 110249--110261 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 110239 TTATTAATAT 110249 TATTA TATTA TAT 1 TATTA TATTA TAT 110262 CGGATAATCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (5 bp): TATTA Left flanking sequence: Indices 109749 -- 110248 TAAGGATTACCATTACGTGTTTATGATTTTGTTAGAAAAATATTGAAAACTTGATATTTCTTTCC GCTAGTTTCATCTTTTTCAATTACTTAACCGGATCAAAATTTTTTTTACTAACAACATAACTATT TTTATTACAGGCTAAAGGTTTGGATGCTACTAAATTGTACGTTTCTCATATCCAAGTTAACCAAG CTCCAAAGCAAAGAAGAAGAACTTACAGAGCTCACGGTAGAATCAACAAGTACGAATCTTCTCCA TCCCACATTGAATTAGTTGTCACTGAAAAGGAAGAAGCTGTCGCCAAGGCTGCTGAAAAGAAGGT CGTTAGATTGACTTCTAGACAAAGAGGTAGAATCGCCGCCCAAAAGCGTATTGCTGCTTAAATAG AAGATGAAAAATAATGATAATATAATTCTCTGTTAATTTTAATCTTTTATCTATGTAATTTTATC TCCCCGTCATATCACATAACTCTAAAATAAGTTTTTTATTAATAT Right flanking sequence: Indices 110262 -- 110761 CGGATAATCCTACGTTCAAAGTATTGAACATAGTTTTATAATGAACAAAGGTATAAGAAATGCTC ATAAACTGAAAAAATCCCGTAGATAAGATAATAAGAAATGCTACTGTCTATATCAATATGTCAAT CGTTACTCATTCCCTCTCTAGTACGGAACGTGTGCGTTCTTCATACCGAGCTATTAGAATTTAGT GAATAAAGGCATCTATCGATTTATGCCATGAACTGAACCAACGCCTGCAGCTACTTTTTCTGCTC CCCCAAGTCCTCCGTTGAGATTTGAAGAAGACTTTGCCGATTGTACTATACCAACCTCAGGTGTC ATGTAGCCGCTAATATTAATCACATACATGCTCATCATGAATACGAGTCCGTGTAAACCGATACA GTAAAAGAGGAATACCATCCTTGTCATTTTATTTTGTAAAATGACTTTTGCAAAACTGGAAAATA ACTTCTCTAAAGCTGATAATTTCTTGTTTTTGTAGTGGTTTAATT Found at i:111549 original size:6 final size:6 Alignment explanation
Indices: 111538--111550 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 111528 CGACTTGTAA 111538 GATTCC GATTCC G 1 GATTCC GATTCC G 111551 CCACAACGCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31 Consensus pattern (6 bp): GATTCC Left flanking sequence: Indices 111038 -- 111537 GTAAAATGGTTGATTGGTTTCCAGAAAGTTCCCCATCTTCTGGAATACCAATAATAGAACTCGTT GGGGACATTTTATGGGACGTACGATTGTTCATTTGTCTTGTTACACCAGACATCATACTTGCAGT CTCGTTGAAGTGAGGACTGACGTTCTCTACTTTTTCTAGGTCCGTCTCTAATTTTTCATTTGCTT CTTTGAGAGTAGCTATTTGCTGCTTCAATTGGTCCACAGATTTTTTCAATTCGTTTCGTTCTTCC TCTTGAGCCGTACTTTTTGAGCGGTATTCCGCCAAAGTAGCCTGGAGCTTCTTATTTGCAGATAG TAAGGAACTTTCGAAAGTATTATCATTCTTGTCTTCAGAGCGAATGTCATTATCAGAATCATCTT CGTTTACCCCAAACTCAATTTTTTTCAATGCAGAAAGTTCTTCTTTTATCTTATTGTAATCAGAA TAATTGTTTAGTTTTCTTCTAACAGTTTCTAGCTCCGACTTGTAA Right flanking sequence: Indices 111551 -- 112050 CCACAACGCTATTTAATTGTTCTTTTAACTCATTTATTGCATGTGATGTTGATTTCCGTTCCTGC TCATAGGATGCACTCAACAATGCATTTTCGCTTTCCAGCTGGTTAAGTTTTAGTTCCTTTGCATG TAACTCAGTTTCTTTTTCTGCTTCACTAGTTGCCTTTGCAAGAGCACCACTTAGTTCCTCATTTC TTTTCTCTAACTGATATATTCTAGCCTGCGTAGTTTCCAACTCCTGTGTTACTAGATTATATTCA GCAATCCTTGTAGATACTTCTTTTTGATTGTTTTCTTGGTCACCATCTTCGTTTCCATTACCTTC TATATCTATATTTTTAGATATTTTGGCCTCTAGTGCCTTGTTTTGCTCCTGTACATTTGTTAATT GTTTCAATAGATCTGCTTCTCTCTCTTTCCAATTTCTTCCTTTTTCCTCCCAGGTAGAATTGATT TCTTGAGTTTTCGCAGTCAGTCTTTTTGCCAATGTTTTTGCAGAG Found at i:111885 original size:6 final size:6 Alignment explanation
Indices: 111874--111886 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 111864 TCCATTACCT 111874 TCTATA TCTATA T 1 TCTATA TCTATA T 111887 TTTTAGATAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54 Consensus pattern (6 bp): TCTATA Left flanking sequence: Indices 111374 -- 111873 CGAAAGTATTATCATTCTTGTCTTCAGAGCGAATGTCATTATCAGAATCATCTTCGTTTACCCCA AACTCAATTTTTTTCAATGCAGAAAGTTCTTCTTTTATCTTATTGTAATCAGAATAATTGTTTAG TTTTCTTCTAACAGTTTCTAGCTCCGACTTGTAAGATTCCGATTCCGCCACAACGCTATTTAATT GTTCTTTTAACTCATTTATTGCATGTGATGTTGATTTCCGTTCCTGCTCATAGGATGCACTCAAC AATGCATTTTCGCTTTCCAGCTGGTTAAGTTTTAGTTCCTTTGCATGTAACTCAGTTTCTTTTTC TGCTTCACTAGTTGCCTTTGCAAGAGCACCACTTAGTTCCTCATTTCTTTTCTCTAACTGATATA TTCTAGCCTGCGTAGTTTCCAACTCCTGTGTTACTAGATTATATTCAGCAATCCTTGTAGATACT TCTTTTTGATTGTTTTCTTGGTCACCATCTTCGTTTCCATTACCT Right flanking sequence: Indices 111887 -- 112386 TTTTAGATATTTTGGCCTCTAGTGCCTTGTTTTGCTCCTGTACATTTGTTAATTGTTTCAATAGA TCTGCTTCTCTCTCTTTCCAATTTCTTCCTTTTTCCTCCCAGGTAGAATTGATTTCTTGAGTTTT CGCAGTCAGTCTTTTTGCCAATGTTTTTGCAGAGCTTTGCTCTAGGTCCAGTAACCTTGATTTCA AAGTCTCATAATCTGCATATTTGGCTAGCTTATCTTCTAGGTAGCTTATTTTTTCCTTAAGTTCC TTCGAGTCATCAATTTTGCCCAATTTTTCCAACGAACTTTGTAGTAGCGGCTGTGGATCAGGAGC CTCTGAAAGCTTTTCGTATACGTCAAAAAGAACCTTTTCAGAGAATTTTGATCTCTGTGTCAAAT TATCAATTTCACGTTGGTACTGCTTAATTATTTTATTCACATTGTTCAATTTTTCCTCAGGTTCG AGTTTTTTAAATTTTTTAGTCTCAGTGGCTAATGACTTTCTTGAA Found at i:114259 original size:6 final size:6 Alignment explanation
Indices: 114248--114260 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 114238 TATGAAAATC 114248 CCATGA CCATGA C 1 CCATGA CCATGA C 114261 AGGTGTGAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15 Consensus pattern (6 bp): CCATGA Left flanking sequence: Indices 113748 -- 114247 GGAACGCAGGAATTTAGAGTACATATGCAAAGCATCAGAACCTAAGCCAAAGATTAGAAATACTA GGTAAGACATCAAAACATAAAGCCATATATTATAAATTGGTCTGCCAGGGTCAAATTTAATAATG GTATTCCAGATGGTGCTGGAATGGGTATTTTTAAAAGTATAGTGTCCTTCTACCTGCTGTAAATC TTGAACAAAGGTGTAAACAGAAAAAGGGAACATGACTAAAATAATAATGAAACAGAATATCAACA GCCTTGCGAACCTTGTCAGGTTTAAACCTGAATTGGTACAGTGTAAAATATCCCTAACGTCCTTG CGTTTTTTATAAAACACGAACAGTACTAAGGTGGCATAAACAGCGCCCACAAATGACCATATAAG CATCCACATGGTATACAAAACAGTGGTAATCCATGTCGGAGACAATAAGTTTTGGCAACCGTTGT AACGAGCGATACCATATCTAAATACTTGTAACAGATATGAAAATC Right flanking sequence: Indices 114261 -- 114760 AGGTGTGAACAAGCTAATCACAAGGTCCTTGACGATTTTCGTCCATGATGAAAGATCCGGTAAAA CACTATCTGCCTTCAAAATTGTATGCAAGTTGTAAATGATGTTGGTAACGGCACATGATATGCCA ATATTCGCACCAACCTGCAACTTGATGACAATATCACACCAACCTTTACCATCCCATCTCGTGAG GAAATCGTCGTCACTCCATATTGCCGCATCTACAATACACGTTAAATTCATTGTAAGAAGCCATG TTATCAAAATGATTGCTGGAATATTCTTGGTATGTGAATGCCATGCTAAAGGGGGAGCTAATAGT ATCACAGCTAGCAAACAAAGCCCTATTATTGCTGACTTGTATGACATGAAAATTTTGATAGTATT TTGCCTTTCCTACACAAATTTAATTGCCTCTAAAGTTAAAAAGCAATAAAATAGAATATGTGAAT ACTGCACAAAATGAATACTTGGGAATTCAGAAATTATTCTTACCT Found at i:118179 original size:4 final size:4 Alignment explanation
Indices: 118170--118184 Score: 30 Period size: 4 Copynumber: 3.8 Consensus size: 4 118160 ACTAAAGCAG 118170 ATCA ATCA ATCA ATC 1 ATCA ATCA ATCA ATC 118185 CTGAGAACCT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 11 1.00 ACGTcount: A:0.47, C:0.27, G:0.00, T:0.27 Consensus pattern (4 bp): ATCA Left flanking sequence: Indices 117670 -- 118169 TATCAGTACCAAGACCTCCGTTGTTTTGTAACGTATCGATAGGACGACTATAAGGAATATCCCTC GAGCCGAAAAGCTTCAGTTTTAAGTCATCCGATATATGATCTAAAATGGGCGGAGAAGTCGTTGA TAGCATTTCCGAAGGCTTTTCCACATTGACTGCAGTATCTAAAAGAGCTCCAGCAGCGGTCTTAG TAGTTCCTGTGCTTGCCGCTTTGCAGTATACAGGGACATTGGGAACTACGGAGGAAAAATCGGAA TGCTCTGAGCTCTTCTCAAAACCAGACGAACTCGTCTTATTTCTCAGTAAATTACCCAACATATA AACTCTCCCTCTTCACCTTCTCTACAAGGCCACACACAAGACAGTTTTAACAGGCAAATGGTACT GGAGGCTCTCACCAATGGGGTTTAAGACGCTCCAAACACACGCTCTCCTTTTTTTCTTTATATAT CGGTAGCAACGAAAGCTAGTCGCAGAACGTTACACACTAAAGCAG Right flanking sequence: Indices 118185 -- 118684 CTGAGAACCTGCTTCGTTCAAACCATCCACTAGAAGAAACACGCACGTGTACCCAAAAATAGAGA CAAACAAACAGACAAAAATAACAATGATTCCTACCGACTAAAGTAAAACAACACTCACGTAATAA AAAATCCTAGATACAACTCACTTGTATTCCTCTCTTCTTTGACCATCACTAAAGCTTCTCTCTTA CTATATTCCTCAAATAAAAAAAAGTTGCAATGATTACTTACCAATGTGCCATAAACTCCGTGCAC CACACTAGCCTTCGATTTGACACATCTCTAAGCTGAAACTGAGAATACTGTTGTAAAACAGGTAT TGGCTGCTTCATAGTACACCCAATTGCCCACAACCCAAGTTAATCATAAGCTCTTGTTGTCGATG AATTGCTCAAAATGTGGCCATTCTTTCAATTTTGCACCTCTAAAACTGCTCCGTGGGTTGTGACA ACAACCTTAAGGGTAATGGACTTTTTTAGAAAGACAAATGAGATG Found at i:120195 original size:3 final size:3 Alignment explanation
Indices: 120187--120200 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 120177 TAGCGATGGA 120187 CAT CAT CAT CAT CA 1 CAT CAT CAT CAT CA 120201 AGGAGAAGGT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29 Consensus pattern (3 bp): CAT Left flanking sequence: Indices 119687 -- 120186 GAAATGATGTAACTGAGAATCCGGCCGCATTGGCAGACACACAATACCATCCCGAAAATGGTTCA TTATACCCCCACCATCATCACTTAGAGACCCCTTTTTCCAAATTACTGTCTATTGGTATGCAAAC TTGTCTAGTCCTTGCATTACACAAATTTCCCGAAGGGTTTATTATTTTTTACACTAACAGGTCAG ATTCGTCAAAGTCCTTGGGATTTTCCATTTTTTTAAGTTTGACGATCCATAATTTTGTCGAAGGA TTTGCAATGACGTTACCATTCTACACTGTTTTCGAATCTAAATGGGTTGCCATTTTGATTACTGC CGTTCTCGGTGGTGGATCTCAACCATTAGGTGCATTGATAGGTTATTTCATCTTTAAAGGTAGTA CTCCAAGGGATCACGAACCCAACATGGATTTTTTACTGAGCGTTACTGCAGGGTTCCTATTAGTA ATTGGTTTACAAATGTTCCAAACTGGTATCGGATTTAGCGATGGA Right flanking sequence: Indices 120201 -- 120700 AGGAGAAGGTGATGAAGAAATGAAACAGTCCCATAGCTCAGGCACAACTTGCTTGAAATGGTGCT GCACTGGCGTTTTGCTAATTCTAGCGAGTGCCCTTTTCACTTGATAAATTAAAACTACGTATATT CTTTCTATATAAGTCTTTTCCCATTAAATAACGGTGTATAATCACGATCATATATCATATATCAT ATCTACGATCATCGGCAAGATCAAATTCTTGTTCTGCTGTATGGTGCTCATCACCATAATCGGTT ATCACGTTTTCCTCATTTTCCTCAAAGGGATTTTCTGTACTACTTTTAGGATGCACCTTGATGAA ACCTTCTTCAGAATTATTTTCTACAGACTCTTTCACTGTGGTTCCCGAGTTTAGAGTATGTTCAA CATTGCTATCCTCTAGTTCAAAAACAGTTTCTTCCGCATCACTGGGAATTGGAGCCTTGATGTCA TCTGCCAAGGGTAATCTAAAATTATACTTCCCCCATTTGAAATAA Found at i:124108 original size:6 final size:6 Alignment explanation
Indices: 124097--124116 Score: 40 Period size: 6 Copynumber: 3.3 Consensus size: 6 124087 AACCTCCAAC 124097 GAAGAT GAAGAT GAAGAT GA 1 GAAGAT GAAGAT GAAGAT GA 124117 CGAAACGCCT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 14 1.00 ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15 Consensus pattern (6 bp): GAAGAT Left flanking sequence: Indices 123597 -- 124096 TCAGGACAAAACCATTTGAAAATGTAGAGAAGTACCCGACTTTCGTTGAATTTATCCTCATCCCG CTTTATAAAATATTTTCCTACGCTTTATCTATGGAGAAAGATAAATTAAAGAATTTGTTAAGGTC TAACTTTAGAGTTAATTTAAGTCAAGAGGCCCTCCAGTACGATCCGCAACCTTTTTTAAAACACG TTCTACAGTTAATATTTAGGCAACAAACCGGTCTTGTAGATGCGATAACCAGATGTTATCAACCA TTTGAATTATTCGACAATAAGACAGCTCATCTTTCAATTCCAGGAAAATCTACACCAGAAGGCAC TCTTTGGGCTCATGTACTGAAAACTGTGGATTACGGTGGAGCAGAGTGGTCCCTTGTACGGATAT ACTCTGGACTTTTGAAGAGAGGGGATACAGTACGTATACTTGATACATCACAATCTGAATCTCGC CAAAAAAGACAGTTGCATGATATCTCAAAGACGGAAACCTCCAAC Right flanking sequence: Indices 124117 -- 124616 CGAAACGCCTTCATGTGAGGTCGAAGAAATTGGCTTATTAGGTGGCAGATATGTCTATCCGGTTC ATGAAGCACACAAAGGACAGATAGTATTAATAAAAGGTATTTCAAGTGCATATATTAAATCCGCG ACGTTGTACTCTGTAAAGAGTAAGGAGGACATGAAACAGCTAAAATTTTTCAAACCTTTAGATTA TATTACCGAGGCAGTTTTCAAAATTGTTCTTCAACCTTTACTGCCAAGGGAATTACCCAAGTTAT TGGATGCCCTGAACAAAATTTCGAAATACTACCCAGGCGTTATTATTAAAGTTGAGGAATCTGGA GAACATGTAATACTAGGAAATGGAGAGCTGTATATGGACTGTTTGTTGTATGATCTAAGAGCGAG TTATGCAAAGATAGAAATTAAAATATCTGATCCTTTAACTGTTTTTTCTGAAAGTTGCTCAAATG AATCGTTCGCTTCAATACCTGTAAGTAATTCGATATCTCGCCTTG Found at i:125855 original size:6 final size:6 Alignment explanation
Indices: 125844--125856 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 125834 AAAATGACCT 125844 AAAGAA AAAGAA A 1 AAAGAA AAAGAA A 125857 TCCCAAGAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00 Consensus pattern (6 bp): AAAGAA Left flanking sequence: Indices 125344 -- 125843 TGGTGATGTTTTGGATAAAGATGCGTTTATTCCAAAATTGAAACCCGCACCTATCAACAGTTTAA GTCGTGATTTCGTGATGAAAACAAGAAGGCGGAAGGGTATTTCTACAGGTGGATTTATGTCAAAT GATGGTCCTACGCTTGAAAAGTATATAAGCGCTGAATTATACGCTCAATTAAGAGAAAATGGCTT AGTACCGTGAAAATCTTGGCGCATAAGAATTAAGCAATATGTCCACAATATTTTTATTCAGCAGA ATTTACATATGACTTCGTATTTAGTGATATAACTACTCATCGGGACTGAAAATTTTTTATTTCTG CCTAAATACAGATGAGATGAGCTTTATAGAATTTTACGCTGTTAAAAAGTTAAACGGTAACAAAG CACAGTTAGTTGAACAACGGTATATAGAGAATGGCTAAAGGTTTCAAGTTGAAGGAGTTGCTTTC GCATCAAAAGGAAATTGAAAAAGCTGAAAAGCTTGAAAATGACCT Right flanking sequence: Indices 125857 -- 126356 TCCCAAGAATTGAAGAAAGAAGAACCAACTATCGTTACAGCTTCTAATTTGAAAAAGCTTGAGAA GAAAGAAAAGAAGGCCGATGTTAAGAAGGAAGTTGCTGCAGATACTGAAGAATATCAAAGCCAAG CCCTTTCTAAAAAAGAGAAAAGAAAGTTGAAAAAAGAATTGAAAAAAATGCAAGAACAGGACGCT ACCGAAGCTCAAAAGCATATGTCTGGCGATGAAGATGAATCTGGCGACGATAGAGAGGAAGAAGA AGAAGAAGAAGAAGAAGAAGAAGGAAGACTGGATCTTGAGAAATTGGCCAAAAGTGACTCTGAGT CTGAAGATGATTCTGAGTCTGAAAATGATTCTGAAGAGGATGAGGATGTCGTTGCTAAAGAAGAA AGCGAGGAAAAGGAAGAGCAAGAAGAAGAACAAGACGTTCCATTGTCAGACGTGGAATTTGATTC TGATGCAGATGTCGTTCCACATCATAAACTAACCGTCAACAACAC Found at i:126228 original size:6 final size:6 Alignment explanation
Indices: 126217--126229 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 126207 TGATTCTGAA 126217 GAGGAT GAGGAT G 1 GAGGAT GAGGAT G 126230 TCGTTGCTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.00, G:0.54, T:0.15 Consensus pattern (6 bp): GAGGAT Left flanking sequence: Indices 125717 -- 126216 GTTAAACGGTAACAAAGCACAGTTAGTTGAACAACGGTATATAGAGAATGGCTAAAGGTTTCAAG TTGAAGGAGTTGCTTTCGCATCAAAAGGAAATTGAAAAAGCTGAAAAGCTTGAAAATGACCTAAA GAAAAAGAAATCCCAAGAATTGAAGAAAGAAGAACCAACTATCGTTACAGCTTCTAATTTGAAAA AGCTTGAGAAGAAAGAAAAGAAGGCCGATGTTAAGAAGGAAGTTGCTGCAGATACTGAAGAATAT CAAAGCCAAGCCCTTTCTAAAAAAGAGAAAAGAAAGTTGAAAAAAGAATTGAAAAAAATGCAAGA ACAGGACGCTACCGAAGCTCAAAAGCATATGTCTGGCGATGAAGATGAATCTGGCGACGATAGAG AGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGACTGGATCTTGAGAAATTGGCCAAAAGT GACTCTGAGTCTGAAGATGATTCTGAGTCTGAAAATGATTCTGAA Right flanking sequence: Indices 126230 -- 126729 TCGTTGCTAAAGAAGAAAGCGAGGAAAAGGAAGAGCAAGAAGAAGAACAAGACGTTCCATTGTCA GACGTGGAATTTGATTCTGATGCAGATGTCGTTCCACATCATAAACTAACCGTCAACAACACAAA AGCGATGAAACATGCCTTAGAAAGGGTACAATTGCCATGGAAAAAACATTCATTCCAAGAGCACC AAAGCGTTACATCAGAAACTAATACGGATGAACATATTAAGGACATATACGATGATACTGAAAGG GAATTAGCATTTTACAAGCAATCACTGGACGCTGTTTTAGTAGCACGTGACGAATTGAAACGACT AAAAGTACCCTTCAAAAGACCATTGGATTATTTTGCTGAAATGGTGAAAAGTGATGAACATATGG ACAAGATTAAGGGTAAGTTGATTGAAGAAGCCAGTGACAAGAAGGCACGTGAAGAAGCTAGAAGA CAAAGGCAATTGAAGAAATTTGGTAAGCAAGTCCAAAACGCTACC Found at i:129579 original size:3 final size:3 Alignment explanation
Indices: 129571--129585 Score: 30 Period size: 3 Copynumber: 5.0 Consensus size: 3 129561 TCAACCATCC 129571 TCT TCT TCT TCT TCT 1 TCT TCT TCT TCT TCT 129586 AATCTATTTC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67 Consensus pattern (3 bp): TCT Left flanking sequence: Indices 129071 -- 129570 GTACCTTATACGACTTGGTAATATCTTGGGACGAATTCAAACGTTCGAAGATACCATTTGCAGAG AGATGCAGATTGACCATTTTTTTAAGCTTACAACTATTATCTGCATTAAAGTACATGCATTCCAA AACGATTGTTCATGGTGACATCAAATTAGAAAACTGTCTGTTACAAAAAGAAGGTAAAAAATCGG ATTGGAAGGTTTTCCTATGCGATTTTGGAATGAGTTGCCACTTCGATGAGAAGCATGTTTATCGT AACGATACTTTTGATGAAAACTTGAGTAGTGGCAACAGCCATAGAAAGAGAAAAAGTATTGAACA AACTAATTTGATAAAGTATCCCACAACCAATTTTTTACCTGACGACCGAACTAATGATTTTGACG CTAGTGAAAACTTAAAATACCAATTTGAAAATCGAAAGCATCAACCGTTTACACCAAAAGGAATG GTTAGCTCCAGTTCACATTCATTAAAGCATCTCAATCAACCATCC Right flanking sequence: Indices 129586 -- 130085 AATCTATTTCACAAGCCAGCCTCTCAACCTCAACCACAGCATCGGAGTCCCTTTCATGGGAGGCA CAAGACAACCGATTTTTCAAACCTGGAACCCGAACCTTCTAAATATATCGGATCTCTGCCTTACG CTTCGCCAGAACTTCTAAGATACTCAGATGCAAGACGTTCAAAATCAGTTGAAATGCATATTTAT GATTCACCAGACTCCTCTCAATCGGAAATTAGCGCAGCATCATCATCTTCCTCTAATTTATCTTC TCTATCATCCTCTACAAAGGCGTCCGCAGTCACGAATTCCGGTGTAACTACAAGTTCACCGTCTG GTTCATCGACTGATTTTCCATGTATTGTTTCTCCTTTAGGACCAGCATCCGATATTTGGGCCTTG GGAGTAATGCTATATACAATGTTAGTAGGAAAATTACCCTTTAATCATGAGTTCGAACCTAGGTT ACGCTCTCTGATTAAAGTAGGCGAATTTGACCGATTTTCTTTAGC Found at i:129619 original size:6 final size:6 Alignment explanation
Indices: 129608--129620 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 129598 AAGCCAGCCT 129608 CTCAAC CTCAAC C 1 CTCAAC CTCAAC C 129621 ACAGCATCGG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15 Consensus pattern (6 bp): CTCAAC Left flanking sequence: Indices 129108 -- 129607 CAAACGTTCGAAGATACCATTTGCAGAGAGATGCAGATTGACCATTTTTTTAAGCTTACAACTAT TATCTGCATTAAAGTACATGCATTCCAAAACGATTGTTCATGGTGACATCAAATTAGAAAACTGT CTGTTACAAAAAGAAGGTAAAAAATCGGATTGGAAGGTTTTCCTATGCGATTTTGGAATGAGTTG CCACTTCGATGAGAAGCATGTTTATCGTAACGATACTTTTGATGAAAACTTGAGTAGTGGCAACA GCCATAGAAAGAGAAAAAGTATTGAACAAACTAATTTGATAAAGTATCCCACAACCAATTTTTTA CCTGACGACCGAACTAATGATTTTGACGCTAGTGAAAACTTAAAATACCAATTTGAAAATCGAAA GCATCAACCGTTTACACCAAAAGGAATGGTTAGCTCCAGTTCACATTCATTAAAGCATCTCAATC AACCATCCTCTTCTTCTTCTTCTAATCTATTTCACAAGCCAGCCT Right flanking sequence: Indices 129621 -- 130120 ACAGCATCGGAGTCCCTTTCATGGGAGGCACAAGACAACCGATTTTTCAAACCTGGAACCCGAAC CTTCTAAATATATCGGATCTCTGCCTTACGCTTCGCCAGAACTTCTAAGATACTCAGATGCAAGA CGTTCAAAATCAGTTGAAATGCATATTTATGATTCACCAGACTCCTCTCAATCGGAAATTAGCGC AGCATCATCATCTTCCTCTAATTTATCTTCTCTATCATCCTCTACAAAGGCGTCCGCAGTCACGA ATTCCGGTGTAACTACAAGTTCACCGTCTGGTTCATCGACTGATTTTCCATGTATTGTTTCTCCT TTAGGACCAGCATCCGATATTTGGGCCTTGGGAGTAATGCTATATACAATGTTAGTAGGAAAATT ACCCTTTAATCATGAGTTCGAACCTAGGTTACGCTCTCTGATTAAAGTAGGCGAATTTGACCGAT TTTCTTTAGCTCAGGTCTGTAAATTTGACAGGAAAAAAAATGAAG Found at i:134477 original size:1 final size:1 Alignment explanation
Indices: 134473--134486 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 134463 CTTTTATTGA 134473 TTTTTTTTTTTTTT 1 TTTTTTTTTTTTTT 134487 CAATTACAAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 133973 -- 134472 AGGTAGTTATGCCAAAAAACTCTGGCACCCATATGTCCATTGTGGTTTTTCGTTTGAAAAGTCAA TCTAAGACCTGAGTATTTTTTAGGATCGACTAGAATCTGCGGTAGTCTGGTAGTGGCGCTAATTT TATTCAAAAATTTTAACTGTTGTGCAACCTTAGACATCTTCTTATTGTAGCAGGCTCACTTATGT TATACTGTTCTTCTATTAATGAGTTTTATGGCCGATTCTTACAGATATCCTGTTTTCCCTGGGTG AAAAGTCCTAGATCACTTTGAACGTCCCAGTCTTCTGAGGACGCAAATGTAGTCACAATATGGCG TATATGAATGCTCCTTTATTTATCTGTATACACCTCTATTGAATAGACGTACGTAGATATATACA TGTACATATATGCATGTGTCACTTTTTTATCATGGCCCTGTTAGACTCACCAAGAATCTATAACC AGGTTTGTTTGTGCTTTTTCTTGTTCTTGTTTTTACTTTTATTGA Right flanking sequence: Indices 134487 -- 134986 CAATTACAATTATCCCACTGAACCTCCTTAAAATTCTTTCATTAAATCCATATATGGATCCTCCC CTTGAATTCCATAGTTGAATTCCTCTTCAGGGTATCTGTCAAATTGAGAAGTGTCACCTTGGCCC TGTTGGATTGGTGGTTCGTACGGCGTTTCTATGTATCTTGCTAACAATTTCTCCCATATCACTTC GTTAAACCACGGATGGTTCTTGACATCTTCACTTCCATTTTGTAAGTTACCCAACCTTTCACTTA AGTCTCTGGTAATTAGCTTCTTCAATAAGTCCTGCGCGTCTGGATGGAAAAATGGTGGGAACTTC AATTCGGCGTTCAGTATATTTTCGTAAGTTTTCATGGTGTTCGAATTGTAAAATGGAGTGTATCC GGCAAGCATTTCATAGATTAGCACACCAAAACTCCACCAATCCACTGATTTATTATACGGTTTTG TACTGACCACTTCCGGCGCTATGTAATCTGGTGTGCCACATAATG Found at i:154398 original size:6 final size:6 Alignment explanation
Indices: 154387--154400 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 154377 ATTCTTTCAA 154387 CATTAT CATTAT CA 1 CATTAT CATTAT CA 154401 ACAATGTCGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43 Consensus pattern (6 bp): CATTAT Left flanking sequence: Indices 153887 -- 154386 TTGCATCTGTCCATTTCCATCGTTCGTGGGACATCTATCAATGGTAATTGCGCCCACCTTTGATT TCAATAACGTGAAAGTACCATTGTTATTTTTGTCTGGATTATTAGGCAATAGTTGGCTAGCTTCC AACCGCTGCTGCTGGTCCTGTTGTATATGACTTTGTATATGCCTTTGTGGCGCATCCTCACATTT GCTGAAATCGAATTCGGGAGGTGGTGATGCTGGGGGCGATATCAGGAACATTTTTTCACTCTCTG GTACCTTCAAGTATTGTTTAGTTAAATTCCTTTGTCCGTCTTGCAAGGAGTAGCTGAAGTTAAAA TTTTCCATTTCTAAAGCACGAGACGCATCCATAACATGCTGAGATATATCATGACTGGGGCAGAT CAACAGTATTCTTTTAAACCTTTTCAAAATAATCAACTGTAGTGGTTCATTTTCATTGATTTGAA ACTTCCTTAAGATATTCTTGGATAGCCAAACCTGGATTCTTTCAA Right flanking sequence: Indices 154401 -- 154900 ACAATGTCGCACTTATCCGAGGTTATAATTATCGTATCCGTTATAATATTACCCATCTGCAGTTC TGTGTTTTATATATCGGTTGGTTTATTGCTTGATCTTTTTGGCCCTCTTTTTTTCATGGAATTAC TGTATTTAAAAAGAAAACCATACTTTATATAGAAGTCATTGGGCAGAAGGGTCTTGTCAACGAGC CGCCTAGGAACTACACCTGACAGCAACTTGCGGCAAGATAGTAAGATAGCATAATTCAAAGCCTC TTGAACCTTACAGCGCCTTGCCGCGGTTTGGTAAACTTCTAAACTGTGTATGTTACACGTGAAGC GAGGCTTGGAACACCTAAGAAGAGATCCTTTTCATATTTACTATCCATCAACACTGCGCCTTTTC GTGATGATGCATTTGATAGTATGGCAGATGTGCTACGGTACTTCGATCTAATGTGCTCTTAGACA GATATGCTAAATAATTTCAATCTAATTCGTCCGCGTTGTAAATTA Found at i:164857 original size:2 final size:2 Alignment explanation
Indices: 164850--164884 Score: 70 Period size: 2 Copynumber: 17.5 Consensus size: 2 164840 TCACTATGGC 164850 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 164885 GTAACTTAGC Statistics Matches: 33, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 33 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): TA Left flanking sequence: Indices 164350 -- 164849 CATTCGGATTGACCGTGTCTAACTAAAACTAACTTTGGCATTATTGTAATATGTGTGTTTGTTTG GATTATTAAGAAGAATAATTACAAAAAAAATTACAAAGGAAGGTAATTACAACAGAATTAAGAAA GGACAAGAAGGAGGAAGAGAATCAGTTCATTATTTCTTCTTTGTTATATAACAAACCCAAGTAGC GATTTGGCCATACATTAAAAGTTGAGAACCACCCTCCCTGGCAACAGCCACAACTCGTTACCATT GTTCATCACGATCATGAAACTCGCTGTCAGCTGAAATTTCACCTCAGTGGATCTCTCTTTTTATT CTTCATCGTTCCACTAACCTTTTTCCATCAGCTGGCAGGGAACGGAAAGTGGAATCCCATTTAGC GAGCTTCCTCTTTTCTTCAAGAAAAGACGAAGCTTGTGTGTGGGTGCGCGCGCTAGTATCTTTCC ACATTAAGAAATATACCATAAAGGTTACTTAGACATCACTATGGC Right flanking sequence: Indices 164885 -- 165384 GTAACTTAGCACCATCGCGCGTGCATCACTGCATGTGTTAACCGAAAAGTTTGGCGAACACTTCA CCGACACGGTCATTTAGATCTGTCGTCTGCATTGCACGTCCCTTAGCCTTAAATCCTAGGCGGGA GCATTCTCGTGTAATTGTGCAGCCTGCGTAGCAACTCAACATAGCGTAGTCTACCCAGTTTTTCA AGGGTTTATCGTTAGAAGATTCTCCCTTTTCTTCCTGCTCACAAATCTTAAAGTCATACATTGCA CGACTAAATGCAAGCATGCATGATATAGCTCCTGTCAAAGTATCACCTTGGCCTCCTACCCTCTT GTTGCTGCCCTCTTCGCTGTTCGTCAACATGTCTTTTTCACTATCGGGTGAGAATATCTTATCTG ACTGACCTTTCTCCACCACAATACAATTCAATTCCTGGGCGATCAAGCTGCCCATCTCGGAGTGA GAGTCTCCCTTCTTGCCTATGGCATCACATAGTCTTTTGAATTCT Found at i:170579 original size:5 final size:5 Alignment explanation
Indices: 170569--170582 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 170559 TAAAAGAGCA 170569 TGTCC TGTCC TGTC 1 TGTCC TGTCC TGTC 170583 TGCGACAGCG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.00, C:0.36, G:0.21, T:0.43 Consensus pattern (5 bp): TGTCC Left flanking sequence: Indices 170069 -- 170568 ACATGTGGTCCTTTTTCTTACCAACACCTCTGCCTTCTCTGATCTCCATGGTGATTGCTCTGGAA ACGACATCTCTACAAGCTAGATCCTTGGCCGTAGGAGCGTAACGTTCCATGAATCTTTCACCTTC AGAATTAACCAAAAAACCACCTTCACCACGAGCACCTTCAGTGATTAAGCAACCAGACCCATATA TACCTGAAGGATGGAATTGAACAAACTCTAAATCTTGCAAGGGGAAACCAGCACGCGAAACCATG GCATTACCGTCACCCGTACATGTGTGAGCAGAGGTACAAGAGAAGTATGCTCTACCATAGCCACC AGTGGCAATAATGGTCTTGTGTGCTCTGAATCTGTGGATGGTACCGTCTTCCTGATTATAAGCGA TGACACCAACGACCTCGCCATTATGGGTCAACAGATCGAGGGCAAAGTACTCAATAAAGAAATGT GTGTCATGTCTTAAAGCTTGGCCATAAAGCGTGTGTAAAAGAGCA Right flanking sequence: Indices 170583 -- 171082 TGCGACAGCGCATGTTCTATAGGCCTGAGCACCCTTACCGTACTCCTTGGTCTGACCACCAAAGG CTCTTTGGTAGATCTTACCGTTTTCAGTTCTTGAAAAAGGAACACCATAGTGTTCCAGTTCAATG ATCGATTTGGGCGCTTCCCTGGTCATGTAATGGATGGAGTCCTGGTCACCTAGCCAATCAGATCC TTTCACAGTATCGTACATATGCCATTTCCAGTTATCCTTGTGCATATTTCCCAGAGCGGCATTGA TACCACCCTGAGCAGCAACAGTGTGGGATCTGGTGGGGAAAAGCTTGGATATACAAGCAGTCTTG TAGCCCGCCTCGGCAAGACCAAAGGCCGCTCTAAGGCCGGCACCACCGGCACCGATTACCACACA GTCATACTCGTGATCTATTATGTGGTACTTCCCGTCTGCAGATCTGGACGCGGAACCGTTTACAG AGCCCTGCGTTTGGCGCACCAAAGCTGACGATGTAAATGTTCTTG Found at i:172580 original size:3 final size:3 Alignment explanation
Indices: 172574--172587 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 172564 ATCGGAAGAA 172574 GAG GAG GAG GAG GA 1 GAG GAG GAG GAG GA 172588 AGAAACTGAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00 Consensus pattern (3 bp): GAG Left flanking sequence: Indices 172074 -- 172573 AAGTGAGCATAAATAACCCTGAGCCACATGTGGTAGATGCCGTGGCACGCCACTTGATAAGAAAC CCGAGTAACAGCCTACAATTGCAAGGCGGAGACATTACAAGAGATCTGTATAAGTGGACAAACGA CCATCCTTCATCACCATCGCAGTATCAGTACCCAAGTCAACCTGCACTTTCCACCTCAATACCTT CACAAGCGCCCTCATTCTCGAATCGTAAAAGGTCTATGAGCTTTTCTGCCGCTTCTATAGCATCT TCCTCTCACCTTAACAACAACTCGGAGGCGAATGGGAATCCTCTAGCGGCAATAGGCCTGGCGCC CGCACCGATGACGCACGAAGAAATCAGGGCTCCTGGTGGATTCAGAAGATCTTTTATAATACAGA AGCGCAGGAAACATAACGTTGATGCGCCCATACCGAATTTTTTCACCAGGAACTTTATTGAATTT TTGACCTTGTATGGCCACTTCGCTGGTGAAGATTTATCGGAAGAA Right flanking sequence: Indices 172588 -- 173087 AGAAACTGAAGAGGAGCCAGAGGAGGAAGCTTTGGAAACGGAAAGCACCCAGCTAGTTTCTCGTG AACACGGGCGCCATCCTCACAAATCATCTACGGTAAAGGCGGTGCTGCTCTTGTTAAAGTCATTT GTTGGGACAGGTGTGCTTTTCCTACCAAAGGCTTTCCATAACGGTGGTTGGGGATTTAGCGCCCT TTGTCTACTCTCGTGTGCCCTCATTTCTTATGGATGTTTCGTATCATTGATTACCACCAAGGACA AAGTAGGCGTAGATGGGTACGGTGACATGGGTCGTATACTATATGGGCCCAAAATGAAATTTGCC ATTCTTTCGTCTATCGCCTTGTCACAAATCGGGTTTTCTGCTGCATACACTGTTTTCACTGCAAC TAATTTGCAGGTCTTTTCTGAAAATTTCTTCCATTTGAAACCGGGCAGCATCAGTCTAGCCACCT ATATCTTTGCACAAGTACTCATCTTTGTCCCACTATCTTTGACAA Found at i:188041 original size:6 final size:6 Alignment explanation
Indices: 188030--188043 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 188020 GATCAACGGC 188030 ATCCAT ATCCAT AT 1 ATCCAT ATCCAT AT 188044 TGTGAATTTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36 Consensus pattern (6 bp): ATCCAT Left flanking sequence: Indices 187530 -- 188029 AATTCTGTCAACAACAAAGTACATTGTTTCAAGTTGGAAGGATCGACTAGTCTTACAAGGATATC GATCTTCTCTAACTTGACGTAAAGAGGATCGTTGAACTTGACATAAAATATTCTCAATTCTTTGG TTAACAGCTCTGGATATTTCTCCAATATGATCCTAATATTTTTCAAAGCAACATATTGCATTTCA GGCGGCGTAGACATCAGTGATACAAAAGCAGATGATAATCTTTTCATTATCAGACTGTTCGAGGA ATATTCAATTTGAGGCAAGTTCCTTACGATTACCTTTATTGTAGCTAAAACAACGGCTGGATTAA CGTGTTGTAAATGCGCAGTTACTCGATCAATGATATCTTGTGCCTCTAAAGAATCTTTTGCCGAA TATTCCGAAAGAGTTCCTAGTATGATAATTCTAGCCCATTCCGTACATTCGTTCAAAGCTAATAA GAATTGTGAAACGTGGGACTGGATCAAACTTGAAAGATCAACGGC Right flanking sequence: Indices 188044 -- 188543 TGTGAATTTCAATTAATGCTGCTGTTGCGTTTGCAATGACTAAAGGATTTGAGTCATCTAGGGCA TTGACCAAATCTTCGACGACACCCAACTCAACGCATAAATCCTTGTTTAATTGGAAAAGTTTTGC GACACATATCACTGCGGTTTTTCTAACATATGCATTATCATCATGCAAGGTACGGCGGAGTGGTG TTTCAATGTATTCCAGGATTTTGTCAACTCTTATCATTGACATCGTTCTGATTGCCATGCAGCGA ATTAAGGGATTTGGATCTTGTGCATCAGTAATGAATGTGTTAACGGCAAGAATACATAATTCGGG ATGCGTCTCAGCATAATTCATCACATAAAGATAAACCAGTTTTTTTTGTTCAACGTCAATTGTGG CAATGTTTTTCAAGACGTCTGGGAACAGCGAAGAGACATCTTTTCCCAACGTCATTTGCTGGATC GTTTTCTTTATTGCATCTTTCCGAGTCTGTGGGTATTGAGATACT Found at i:193457 original size:6 final size:6 Alignment explanation
Indices: 193446--193459 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 193436 GCCATAGTTT 193446 AAAGTA AAAGTA AA 1 AAAGTA AAAGTA AA 193460 GTTACATGCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14 Consensus pattern (6 bp): AAAGTA Left flanking sequence: Indices 192946 -- 193445 TCTCCAAAAACTTTGTTCCTTTAATGTAGAATAAAACTTGAAACGGTGATTGGTAAATAAGTTGA GGTTAGTGAGCCGTTCTACGGTCCCTTCATTTTTGACTGATCTATGAAGGTATTTCCACATACTA AATGAGCATAAATTTCTTCATTACAATATCTTTATAATGCTGTTTTTACGTTCTCACTTTGTGCC CTTTTATATATCCTAAAGGATTTAGTTCAATTTTAGAAATTTTCGTGCGGCTGAGTATCCGCAAA TCGTTCTTTGTTTGGTATGTATTACTAGTCAAGGATTATTTAATGGTATTTGTTACGAGAACCAA ATTACACACAAATCTCCTCAATCGTTTTCTCATCAAGATAAATATGAGAGAATCAATTTATAAGG TAATTGTTTTATCTATATCAGGTACAAAGTATCAAAATGTGGTCGGAAAAACTTTATAAGTAATG AATCACTAATAACTCTTGAAAAGCTGGAATGTAATGCCATAGTTT Right flanking sequence: Indices 193460 -- 193959 GTTACATGCCGTTATAAAAGAAGGAAAATATGATATATCCCCGGATGCCCTTGGCAGACTGGTCC TCTATCAATATCGGTAATTGCATTGTAGGATATGATCATATATCTAAAAACTATACTGGCAAGTG ACAGTTGTGTAAGCGCAATAGCTCTTTGCAGATATACAGTGATCCACATACGATAACAGGAACAA TCGTCTTTAACCCACTTGTTTCAAGGAAGGTCCAGACACTTTGAAGATCCGGCTGCATGTTAACA TTTCTCGTATACCGGTTTTTGATAAATGCGAGAAGATTCACCGGTTCTAGGGATTGGATCCACGG CATTCCAACCACTGACCCAAATCTAGTCACAATAACATAATCTTGTGGACGTATTAGCGGATCAA GTAAGGGAGACACCTTTTTCCCAGTTGTTATAGCAATGACAAATGTTAATGGCGTATCACCGTAC GTGGTCCTTAAATGGCAGGCTAAATTTCGAGCTGCCTTCGCATTA Found at i:196859 original size:6 final size:6 Alignment explanation
Indices: 196850--196870 Score: 42 Period size: 6 Copynumber: 3.5 Consensus size: 6 196840 ATTGGTATGT 196850 TTGCAG TTGCAG TTGCAG TTG 1 TTGCAG TTGCAG TTGCAG TTG 196871 TCTCCTTTAA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 15 1.00 ACGTcount: A:0.14, C:0.14, G:0.33, T:0.38 Consensus pattern (6 bp): TTGCAG Left flanking sequence: Indices 196350 -- 196849 TTACCAGTCATCATCATCATCGCCATCGTCATTATCATCATCGTCAGCACTTTCCGCCCGCATTT TGTTTGCTCTTGCTGCCAATGCAGAAGCTAAACCGTCGCTAAACGTCCCCACCGGATTACTCTGA TTATCACTAGTGGGTCCAACTGTTGCACTTCCAAACTGTACACCTTCTTGTGCACTTGAAATGGT ATTGTCGATTTGGCTTGATTTCTGATTTGTAACGTCATTCACTGCCCCTGTCGCTGCAACAGGCA CCGTATTTCTTGTGTCTTTATAAGGAGTCATATAAGCAGTAGGAACCCAACCTTCTTTGCTTCCA TCGAGAAGCTTTGCTAAAGACCAACCACTAGGTTCATCTCTGCTTATAAATACAATATCGCCCTT TTTTAATGGCAACTCCGAAGATGATCCGGAACCTGGAAAGTCGTATGCAGCTTCGAATTTCGGAT CCTTTGGTTGGCCCATGGGGGGAGGGGGTGGTGGTATTGGTATGT Right flanking sequence: Indices 196871 -- 197370 TCTCCTTTAACGGTTCTTTATTTTTTTCAACCCCTTTTGAAGGTGGCATCGATACCTGGTTTTGC TTGGCGGATGAGGATTTGTGGCTTGAGGAGGCTTTCTTTACTGCGACTTTTTCCTTCGATGAGGG TTTTGAGCTGTGTTTCGAGCTTACTTTTGCAGCAGGGATTGCAGATGACTTTATTGGTACGGTCT TATCCGGTTTAGGATTGTATGCTGCCTGTGCAGCGGTAGCTCGCAAAGATAACGGATTCACAGGT TTTTGCGAAGGGAGAGGTTGCTTTTTTGCAGCATCCCTATGACTTCTATGGCTATGTGTATGCTT ATGAGTAGATTTGTGTTTACTCTTTTTGCTTTTGATAGGTTTCCCGCTCAACCCACCTGGATTCT TAGGTTTTTTATTCGATTTGGAGTTAGCAGGGTGTCCACGACGCACGTATATTGTACTTGACTTG TAGATGTCACCGTATTTCGGTGCTGAATCGCTTATCTTTGAGCGG Found at i:202062 original size:5 final size:5 Alignment explanation
Indices: 202052--202065 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 202042 TGTCCTCACG 202052 TGAAT TGAAT TGAA 1 TGAAT TGAAT TGAA 202066 ACTTTTTCAG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36 Consensus pattern (5 bp): TGAAT Left flanking sequence: Indices 201552 -- 202051 ATTAACTTGACTCGCACATGCCTGCTGGGTCATATCCGAATCTGCAAGAAATTAGGATTACAAAT ATTTATTCAAACGTTGCACAACCACGCAATAGAAGATAATATCTGTAAATTTTAATCGCTTTCAT CTGAAAACACTGAGCCTCTTCTTAATTTTCACGGACTTTTTCGCAGCCCAGGTTTGACCGGCTAA GTACGAACCTCTTTTGTTTGGAATAAGAGTTTGGTATTAATCAATTGTTGGTACAAAAGATTAAT AGTATTACTTGTGTTTTCAGAATATAATTGTCCGTGAGCGTCCTAACTGTCATCGAGTTTATAGG AAGCTAATTAGTAAGGACTGACCATGCAAACCCAGCAATGAATGAAAGGATATAAACGAGGGAAG AAATGGTAGCAGTATTAAGTAAAATTGTCCATTTCCCCTCGTGAAATTATCCAAAACGCGGCAGA AGAACTTTTAAGTTATCTACTGTACATAGTGTTATTGTCCTCACG Right flanking sequence: Indices 202066 -- 202565 ACTTTTTCAGAACATTATCGCTGAACTATAAATGAAATTTTGTAATGATTGTTCTGATCCCATCT TACTAAAAGCATTATTGTGAAGTATAAAATACAATAAATTTCTTCTCAAAAAAACTTGCCGTACA TGATATGGAGAAATAGGTGAATTTAGGGATAGTAGTTATTATAATGAGCCTATTATAGAGAATCT ATTATCGATTTCTAACGGTCGTATCAATCTGTTGTATTACGGGCTCGAGTAATACCGGAGTGTCT TGACAATCCTAATATAAACAGTCTTAGGGAAGTAACCAGTTGTCAAAACAGTTTATCAGATTAAT TCACGGAATGTTACTTATCTTATATATTATATAAAATATGAATCATACTAAGTGGTGGAAGCGCG GAATCTCGGATCTAAACTAATTGTTCAGGCATTTATACTTTGGGTAGTTCAGCTAGGGAAGGTCG GGTTTTGTCTCATGTTGTTCGTTTTGTTATAAGGTTGTTTCATAT Found at i:204068 original size:6 final size:6 Alignment explanation
Indices: 204057--204071 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 204047 AGCAGCCTCC 204057 GATGGT GATGGT GAT 1 GATGGT GATGGT GAT 204072 AGGAATATGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33 Consensus pattern (6 bp): GATGGT Left flanking sequence: Indices 203557 -- 204056 GCGGTCCAGAGAATGATTTAGGTATCAAGTATAATTTACCTAATGGTGGGCCAGCTCCAGAGAGT GTCACTAACGCTATCTGGGAAGCGTCTAAAAAATTAACTCACTATAAAATTATAAAGAACTTCCC CAAGTTGAATTTGAACAAGCTTGGTAAAAACCAAAAATATGGCCCATTGTTAGTGGACATAATTG ATCCTGCCAAAGCATACGTTCAATTTCTGAAGGAAATTTTTGATTTTGACTTAATTAAAAGCTTC TTAGCGAAACAGCGCAAAGACAAAGGGTGGAAGTTGTTGTTTGACTCCTTAAATGGTATTACAGG ACCATATGGTAAGGCTATATTTGTTGATGAATTTGGTTTACCGGCAGAGGAAGTTCTTCAAAATT GGCACCCTTTACCTGATTTCGGCGGTTTACATCCCGATCCGAATCTAACCTATGCACGAACTCTT GTTGACAGGGTTGACCGCGAAAAAATTGCCTTTGGAGCAGCCTCC Right flanking sequence: Indices 204072 -- 204571 AGGAATATGATTTACGGTTATGGCCCTGCTTTCGTTTCGCCAGGTGATTCTGTTGCCATTATTGC CGAATATGCACCCGAAATTCCATACTTCGCCAAACAAGGTATTTATGGCTTGGCACGTTCATTTC CTACATCCTCAGCCATTGATCGTGTTGCAGCAAAAAAGGGATTAAGATGTTACGAAGTTCCAACC GGCTGGAAATTCTTCTGTGCCTTATTTGATGCTAAAAAGCTATCAATCTGTGGTGAAGAATCCTT CGGTACAGGTTCCAATCATATCAGAGAAAAGGACGGTCTATGGGCCATTATTGCTTGGTTAAATA TCTTGGCTATCTACCATAGGCGTAACCCTGAAAAGGAAGCTTCGATCAAAACTATTCAGGACGAA TTTTGGAACGAGTATGGCCGTACTTTCTTCACAAGATACGATTACGAACATATCGAATGCGAGCA GGCCGAAAAAGTTGTAGCTCTTTTGAGTGAATTTGTATCAAGGCC Found at i:205040 original size:6 final size:6 Alignment explanation
Indices: 205029--205042 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 205019 TAATACAACA 205029 TTGTTT TTGTTT TT 1 TTGTTT TTGTTT TT 205043 CGTTACTCGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86 Consensus pattern (6 bp): TTGTTT Left flanking sequence: Indices 204529 -- 205028 CCGAAAAAGTTGTAGCTCTTTTGAGTGAATTTGTATCAAGGCCAAACGTTTGTGGCTCCCACTTC CCAGCTGATGAGTCTTTAACCGTTATCGATTGTGGTGATTTTTCGTATAGAGATCTAGATGGCTC CATCTCTGAAAATCAAGGCCTTTTCGTAAAGTTTTCGAATGGGACTAAATTTGTTTTGAGGTTAT CCGGCACAGGCAGTTCTGGTGCAACAATAAGATTATACGTAGAAAAGTATACTGATAAAAAGGAG AACTATGGCCAAACAGCTGACGTCTTCTTGAAACCCGTCATCAACTCCATTGTAAAATTCTTAAG ATTTAAAGAAATTTTAGGAACAGACGAACCAACAGTCCGCACATAGAATTATTGGTCTTGAACAA GCACTAATTTTCCAAAGATGTTTTAACTGATCTTAATTTATATGTAGAGGATATATGTAGTATAT CTATTTTTTGCTGATTGACTTATCAATTAGCTTCATAATACAACA Right flanking sequence: Indices 205043 -- 205542 CGTTACTCGCGACTTTCTTCGCGGCAGAGCCGCGCTACAGGAAAACAAGATCAAAACATGCCCCT ATTGGAAGGCTTAAAAAATGCTTATCCCGAACGAGCCAACGGTAATCAACACTATCGTCATACCA ACAACAGTTGAGTTATTTTTCGCTCCCATACTTTTTAGAATTGGTTTGTTTGTGTTTGGTTAAAT TTCAAAGCCTTTATATTCTTTGATATAGATTACTCTACAATTTCTTTGTATACAGCGGGAAATTG ACACTTCAAAGTTCCTCTCATATCAACAAACATTAATACAGTTCCTGAAAATGTATTCTTGGAAG TCAAAGTTTAAGTTTGGAAAATCTAAAGAAGAAAAAGAAGCCAAACATAGTGGGTTTTTTCACTC CTCTAAAAAGGAAGAACAGCAGAATAATCAAGCAACTGCGGGGGAACATGATGCTTCAATTACTC GTTCATCTTTAGACAGGAAGGGCACGATAAATCCATCAAATTCAT Found at