TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: ref|NC_001147| [org=Saccharomyces cerevisiae] [strain=S288C] [moltype=genomic] [chromosome=XV] Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1091287 ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31 Found at i: i:141250 original size:6 final size:6 Alignment explanation
Indices: 141239--141251 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 141229 CTTTATATAG 141239 TAGCGT TAGCGT T 1 TAGCGT TAGCGT T 141252 TTTCCTGAGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38 Consensus pattern (6 bp): TAGCGT Left flanking sequence: Indices 140739 -- 141238 TTATTGCGGAGATCTTGAGTAAAAGACGATGCATCTGAATCAGAAGAATCAAGCTCTAAGTATTT TTTTGCGCGAATGATCAAATCATCATTGGTCATCACTTTACAGTTATCCATCAGTTCAACTAGTT TCTCAATGACGGGGTTATTATTTTTTGCGTTGTTTAGCTTGTAATCCTTAACAACTTTCTCGAGT TCCTTATATGATCTGAAATGATGGGGGGTTCTCTTTGACGGCGGTAACAACTTCATTAATCCTCT CCATCCAATCTCTTCTATAATGTTTATCATCCCCTCATTCTCTACAACGATTCTATTAGCCAACC CATGAACTGTGTAACACCCAATCTGATGGACAATTTCCTTATTTGTATGCGAGTTTTCGAAAATG GACAGTAAATTTTCTATTATACTATCAACTGCTTTGTTTGTTAACGAAAATATAAGTATTTCTTC AGGCTTAATATTCTCCACAGTAATTAAATGTAGTACTTTATATAG Right flanking sequence: Indices 141252 -- 141751 TTTCCTGAGCCTGGGCCCGCAATGACTTTTATCGTAGACGCTGGTTCATATGACTTATTTATTAC CTTCCATTGAGATGGAGTTAGCTTGTCCATCTGTCTTCAACGAACGACGTATACCTTCTCTATAT TTTTTCTACATATTATGACTATGTAACTGCACTGCGAGTTGTAAGTTTTGATCAACAAACAACTT TAAAGCTTAAATTGTGCAAAAATGAAAAAAAAAAAAAAATTCTGACACATCACAAGGGAAGAGAC AAGACAAAGAAGTAGAATTTAAAGTAATGCACTAATATGGGAGTTTTTTTTATAGTTTTCGGATA TTTAAATCAGGCTTTATTATTTAGTTTATGAATTTTCGCTAACATACTAGCCAGTTGCAAGTACG TTCCAACACCCTCCAGAATTCTCATATGGGTCAAACCGATTTCTTTTATCATTTCCAATCTTACT GATTCTTTCACTTGTGCTAAGTTTTTGGTAACGCGGAAAGATGTT Found at i:141475 original size:1 final size:1 Alignment explanation
Indices: 141471--141485 Score: 30 Period size: 1 Copynumber: 15.0 Consensus size: 1 141461 TGCAAAAATG 141471 AAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAA 141486 TTCTGACACA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 14 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 140971 -- 141470 ACGGCGGTAACAACTTCATTAATCCTCTCCATCCAATCTCTTCTATAATGTTTATCATCCCCTCA TTCTCTACAACGATTCTATTAGCCAACCCATGAACTGTGTAACACCCAATCTGATGGACAATTTC CTTATTTGTATGCGAGTTTTCGAAAATGGACAGTAAATTTTCTATTATACTATCAACTGCTTTGT TTGTTAACGAAAATATAAGTATTTCTTCAGGCTTAATATTCTCCACAGTAATTAAATGTAGTACT TTATATAGTAGCGTTAGCGTTTTTCCTGAGCCTGGGCCCGCAATGACTTTTATCGTAGACGCTGG TTCATATGACTTATTTATTACCTTCCATTGAGATGGAGTTAGCTTGTCCATCTGTCTTCAACGAA CGACGTATACCTTCTCTATATTTTTTCTACATATTATGACTATGTAACTGCACTGCGAGTTGTAA GTTTTGATCAACAAACAACTTTAAAGCTTAAATTGTGCAAAAATG Right flanking sequence: Indices 141486 -- 141985 TTCTGACACATCACAAGGGAAGAGACAAGACAAAGAAGTAGAATTTAAAGTAATGCACTAATATG GGAGTTTTTTTTATAGTTTTCGGATATTTAAATCAGGCTTTATTATTTAGTTTATGAATTTTCGC TAACATACTAGCCAGTTGCAAGTACGTTCCAACACCCTCCAGAATTCTCATATGGGTCAAACCGA TTTCTTTTATCATTTCCAATCTTACTGATTCTTTCACTTGTGCTAAGTTTTTGGTAACGCGGAAA GATGTTGTGACGATATCAATCGAGGAATAACCCTTTTTCCAAAGATCTGTTCTTAAGATTTGAAT TGAATCTTCTAGGTTGGAGGCTAGTAACATTTTCTTCACTATTAGAGGGTGAGGAGAATCAACAA TTTTGAAGACATTGTCTGCGTTCACTAAACCGTGTCCTGCTACTGTACTTTGTAGATTGTTTATG GCCTGTCTCATGTCACCCTCCGCTGTAAAAATGATTGCTTCTAAC Found at i:144268 original size:6 final size:6 Alignment explanation
Indices: 144257--144271 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 144247 GATATCTGGG 144257 TCCATC TCCATC TCC 1 TCCATC TCCATC TCC 144272 TGCTGGATCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.13, C:0.53, G:0.00, T:0.33 Consensus pattern (6 bp): TCCATC Left flanking sequence: Indices 143757 -- 144256 ACAATAGGTGTATATTGATGTCAGAGATACGGGTTAAACATGCGCAACTGGTAGTAGTTCTTCAA AGGGTGTTTATGCTTATCATAGTACTTGGACATTAGCCGCCGAAACTGGCTCCACTCGAAATCTA AATGGCATTCCCTTTTTAATATTAACAACACCAATCTTAGTGTCCGAGAGGTCCAAATCTAATGT AGGGCCGTGGGAGGATACTTCTTATTTCTCTTTGCTTATTTTGCTTTGATGTTGTATGTGTTTTA CCTGTAAATTCTCTAATATGGTCATTTTTGCTCTTAATGACTCTTTTATTTTTACCCGGATTGCA ATTTTTCACATATCGTCTTTTTATTCACTACGTACTTTAATCGTCTTCGCGATGATATGTACTGC TAACGAAAGAATGCCATACAAAAAAAAAGCTACCACATCGCTCGACGACCTCAATTATGCAACTT GTGCCGCTAGAATTGAATAGATCCACTCTAAGTGGGATATCTGGG Right flanking sequence: Indices 144272 -- 144771 TGCTGGATCATTGTGTTTGTCCCTCAAATTTACGAGAACTTTTACCGGAAGTCGTCTGATGGGCT GTCTTTATTGTTCGTGGTACTTTGGTTGGCCGGCGATGTCTTTAACCTTATGGGTGCCGTTATGC AACATCTTTTGTCTACCATGATCATTCTTGCTGCTTACTATACGGTGGCAGATATCATTTTACTA GGTCAATGTCTATGGTACGATAATGAGGAAAAACCAGCAGTAGACCCTATTCATCTCTCCCCTGC CAATCCAATAAACGAAAACGTTCTGCACGATGTGTTCAATGAACAACAACCGCTTTTGAATTCCC AAGGTCAGCCAAATCGTATTGATGAAGAAATGGCTGCTCCTTCATCCGACGGAAACGCTGGTGAT GATAATCTCCGTGAAGTCAATTCAAGAAATTTGATAAAAGACATATTTATTGTTAGTGGTGTAGT TTTTGTAGGTTTCATCTCGTGGTATGTAACCTACTGCGTAAACTA Found at i:145180 original size:1 final size:1 Alignment explanation
Indices: 145176--145188 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 145166 CCTCACAAAC 145176 TTTTTTTTTTTTT 1 TTTTTTTTTTTTT 145189 CTCTCTGTCA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 144676 -- 145175 AGTCAATTCAAGAAATTTGATAAAAGACATATTTATTGTTAGTGGTGTAGTTTTTGTAGGTTTCA TCTCGTGGTATGTAACCTACTGCGTAAACTACACGCAACCTCCTCCCGTGGAGGATCCATCACTG CCTGTTCCCGAACTGCAGATCAATTGGATGGCTCAGATATTCGGTTACTTAAGTGCCCTTTTGTA TCTGGGTTCAAGAATTCCTCAGATATTACTGAATTTTAAGAGAAAGTCTTGTGAAGGTATCAGTT TCCTATTCTTTTTGTTCGCCTGTTTGGGTAATACCACATTTATTTTCTCTGTGATTGTCATTTCT TTAGACTGGAAGTATCTAATTATGAATGCTTCCTGGTTGGTTGGAAGCATAGGTACTTTATTCAT GGATTTCGTCATATTTTCCCAGTTTTTCATTTACAAAAGAAATAAAAAATTTATACTGAATTAAC ATGTTCTATCTAATATTTATTTAACATATTTTTGACCTCACAAAC Right flanking sequence: Indices 145189 -- 145688 CTCTCTGTCATTGACATTTTTTTAATGTCACAAAAAGAAAAATTAAATGTATTATAAAATTTCAT TTAAATAGGAAAAAACCCGTGATTACTAAAGGCATATTAAAGATCTATTAAAGATCTATTAAAGC TTTCTGCTACCAGTATGGATAATATTTTAAAGGCATCAAATATGGAAGGGACTTCAACAATGACA GTTACCTCGCGTAGTTCTGAAGACTCTAGTTGTATCTCAAATCATGAACAAGATACCGATACACA TAAGGACGGCGACACAAGTGGTCTGGAAAACAGTAAAATTTCGAAGAGAAAGTGGATGAAAGAGT TTTTTAAACTTTCCAAATCTCCAGCTTCCAAAAGCAGCCGGAGTATAGGTTCCATGAAAAGTAAC CAGAGCCTCGTTTCAATGAAAAGTAGTGACGATGGCAACAGTTATAAAAATGATTACTCTTCTAT CTGTGGTAACAGCCTTCCATCTGCAGGCTTGAGTCGTTCGAATAG Found at i:147782 original size:6 final size:6 Alignment explanation
Indices: 147771--147784 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 147761 TAATGAGCTA 147771 ATGAAT ATGAAT AT 1 ATGAAT ATGAAT AT 147785 TGATTCGAGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36 Consensus pattern (6 bp): ATGAAT Left flanking sequence: Indices 147271 -- 147770 TATACTGAAAATAAAAAGAGGCTCTTTAAATGTTGACACTCTACTCCAATATCAACTGTAAAAAA TCTCTTTATCTGCTGACCTAACATCAAAATCCTCAGATTAAAAGTATGTCCTCCACTAGGCCAGA GCTAAAATTCTCTGATGTATCAGAGGAGAGAAACTTCTATAAGAAGTATACAGGGTTGCCGAAGA AACCATTAAAAACCATTAGATTAGTGGATAAAGGCGACTATTACACAGTTATAGGTTCAGATGCG ATATTTGTGGCAGATTCAGTCTATCATACTCAATCTGTTTTAAAGAACTGCCAATTGGACCCTGT AACGGCAAAGAACTTCCATGAACCAACTAAATATGTTACTGTTTCGCTACAAGTTCTTGCCACTC TGCTGAAGTTATGTTTGTTGGATCTGGGATATAAAGTTGAGATATACGATAAGGGTTGGAAATTA ATAAAAAGCGCATCTCCAGGGAACATTGAGCAAGTTAATGAGCTA Right flanking sequence: Indices 147785 -- 148284 TGATTCGAGTATCATCATTGCAAGTTTGAAAGTTCAATGGAATTCCCAAGATGGAAACTGCATTA TTGGAGTTGCTTTCATTGATACCACTGCATACAAGGTGGGAATGCTTGATATTGTCGATAATGAA GTGTATTCCAACCTAGAGAGTTTCTTGATTCAATTGGGTGTAAAGGAATGTTTGGTGCAGGACTT GACATCAAATTCAAACTCCAATGCTGAAATGCAGAAAGTAATAAATGTAATTGATCGCTGTGGGT GCGTCGTTACATTATTGAAAAACTCAGAATTTTCTGAAAAAGATGTCGAACTGGATTTAACCAAG TTACTGGGCGATGATTTGGCATTATCGTTACCACAAAAATACTCTAAATTATCTATGGGTGCATG CAATGCATTGATTGGATATTTACAATTGCTCTCAGAGCAAGATCAAGTAGGCAAGTATGAATTAG TTGAACATAAATTAAAGGAGTTTATGAAGTTGGATGCCTCCGCTA Found at i:159857 original size:6 final size:6 Alignment explanation
Indices: 159846--159859 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 159836 ATAGCGGCTT 159846 CGGAAA CGGAAA CG 1 CGGAAA CGGAAA CG 159860 TTGATGACAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.43, C:0.21, G:0.36, T:0.00 Consensus pattern (6 bp): CGGAAA Left flanking sequence: Indices 159346 -- 159845 TTTGCTCGGCATGCCGGTAGAGGTGTGGTCAATAAGAGCGACCTCATGCTATACCTGAGAAAGCA ACCTGACCTACAGGAAAGAGTTACTCAAGAATAAGAATTTTCGTTTTAAAACCTAAGAGTCACTT TAAAATTTGTATACACTTATTTTTTTTATAACTTATTTAATAATAAAAATCATAAATCATAAGAA ATTCGCTTATTTAGAAGTGTCAACAACGTATCTACCAACGATTTGACCCTTTTCCATCTTTTCGT AAATTTCTGGCAAGGTAGACAAGCCGACAACCTTGATTGGAGACTTGACCAAACCTCTGGCGAAG AAGTCCAAAGCTTCTCTGGTGTCAGCTCTGTTACCGACGTAAGAACCAACAATAGAGATGGACTT GACGACTTGGTTGAAGACATCAGAACAACACTTGGCACCAGCTGGCATACCGACCAAAACGGTGG TACCGTTAGCTCTAACGTATCTGGTAGAAGCTTCAATAGCGGCTT Right flanking sequence: Indices 159860 -- 160359 TTGATGACACCGTGAGCACCACCGTCAGTGGCCTTTAGAACAGCACCGACAATGTCCTTTTCCTT AGTGAAGTCAATGAAGACTTCACCACCGATGGATCTGAATAATTCTTCCTTACCTTCACCACCGT CAATACCCAAGACTCTGTAACCCATAGCCTTGGCGTATTGAACAGCCAAAGAACCTAGACCACCA GCAGCACCGGAGATAGCAACCCAGTGACCGGCCATCAAGTTAGCAGACTTCAAAGCCTTGTAGAC GGTGATACCAGCACACAAGATGGGGGCGACTTGGGCCAAGTCGGTACCTTGAGGAATGTGAGCGG CTTGAACAGCGTCAGCGGTAGCGTATTGTTGGAAAGAACCGTCGTGGGTGTAACCAGACAAGTCA GCGTGAGGACAGTTGGATTCGTTACCCAATTCACAGTATTCACAGGCCATACAAGAACCGTTCAA CCATTTGATACCGGCGTAGTCACCGATCTTCCAGCCCTTAACGTT Found at i:170314 original size:6 final size:6 Alignment explanation
Indices: 170303--170315 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 170293 ACAGAACCAA 170303 TACTCT TACTCT T 1 TACTCT TACTCT T 170316 CCGCTCATTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54 Consensus pattern (6 bp): TACTCT Left flanking sequence: Indices 169803 -- 170302 CCACCTTCAAGATTATCTGCAGAAAGTTTACAGGCATCCCAAGAGCCATTTTACTCCTTTCAAAT CGATACGTTACCAGAACTGGATGACTCTAGTATCATCAGTACATCCATTTCACTCTCTTATGACG GTGACGACAATGAAAAAGCCCTGACTTGGGAAGAACTCTAGGTCAAACTCTATTTTTATACAGCA ATGAGTACCTTTTCACATACACATAAATATATTAAATATAATAAATACAATAAATATAAAATAAC CCTTTTCGAAACTCTTTACTTCCTAAGGCCTCTCATTACTTATCACCTAGCATCATGCTCTTCAT ACATGCCATCTACTTTCAAACGATATACGGCTAACCAGAAAAGTACGGACAATCAGGGACGAGCA GGGACATGACGCCTTCCGCACAGATCCCAGAGAAAAGCAGGGAAACAAGAAAATAAGAAAACAAG AAAAACAGTAGTTACCCTTGTAAGTGTCATCCACAACAGAACCAA Right flanking sequence: Indices 170316 -- 170815 CCGCTCATTCCCCGCAGAATGATAGAACTATTCTAAATCCCCTTGCCTTGCTTGGCCTTGACTTG GGTTGGGACTTGGACCTCTAGAACCGATGTGCCTTCAAACATCTTAGCGAGATAAGAGTCTGCCA TTAATGCATCGAGCCAATATCTTGGACTAGTACGAGGTTCACGTAGCCTTTCTTGCACGGCACCA GCGTCCCACCCCAAGTTCTTTGCTATACTGACCGCCTTACACATTTTAGTGTGATTCCAACCCAA AGTAGCTCCTCAAAAAGGGTCACCCGATCGGTGAATCAATCCGCGGCGCAGAAATGTTCGTAGAG CTCTCGTTTCTTCTAGAACGCTCCCTTGATGAAACGAAAATTTCCATCACAATAAAGCTCGCACG CCTTTTTGAAAACCCCAAGCTTTGCTGTGTCTTCTTGTGAAAAGTTTTGCCCAACGATTATCTAT TCTACATATAACCGGGGAGTTAAGCACATCCTATTGCCCTACATT Found at i:182802 original size:6 final size:6 Alignment explanation
Indices: 182791--182803 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 182781 GGACGGTTTG 182791 ACGGAA ACGGAA A 1 ACGGAA ACGGAA A 182804 GCAACAATAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.54, C:0.15, G:0.31, T:0.00 Consensus pattern (6 bp): ACGGAA Left flanking sequence: Indices 182291 -- 182790 TCATGAATACAACTAATACAAGAGCAAAATCATCTACTTTGCATCCACCTGGTGCTCGCCATAAT AAGAAAGGCAGTAAATTCGATATGAACTTCGATTTCGATGAAAACTTAGAAGAAGAAGATGATGA CGACGACGATGACGAAGAAGGTGACGATATACACTCTCAATTTTTTCAGTTAGATGATGATTTTG ATGCTAAGGGTTCTGGAGCAAGTCCAGCCCACAAAGGCATCAACGGCATGTCCAACAATAAAAAC AACACCTACACAAATAACAGAAACAGCATCAGCATTCTTGATGATCGAGAGAGTTCAAATGGCAA TATAGGAAGTGCTTCAAGGTTAAAATCTCATTTCCCCACAAGTCAAAAGGGGAAAATTTTTTTAA CTGACAATAAAAATGATGGACAAAAATCTGATTCACTGAATGCCAATAAAGGTATACATGGAGAT GGAAGCAGCGCCAGCGGTAACGGATCGGTGAGTAGGGACGGTTTG Right flanking sequence: Indices 182804 -- 183303 GCAACAATATTTCCGATATGGAATCTTATATCAATGAAAAAGATTTAGATGATTTGAATTTTGAT ACAGTGACCTCAAACATAAACAAAACAGTATCTGATTTGGGAGGACATGAATCTACAAATGATGG AACGGCGGTCATGAACAGGGATTCAAAAGACAGCCGCAGTAATAGCAATGAATTCAATGCACAAA ATCGTGACCGAATCACTCCTGGCTCATCATATGGGAAGTCCCTTTTAGGATCTGAATATTCCGAA GAACGTTATTCTAATAACGACTCGTCAACCATGGAGAGCGGTGAAATGTCTCTTGATTCAGACAT GCAAACTAATACTATACCCTCTCATTCCATACCAATGTCTATGCAAAAATATGGCATCTATCATG GCGATGATGACTCTACCTTAAACAATGTCTTCGATAAAGCCGTACTGACTATGAATTCATCGCGA CACCCAAAAGAAAGGCGCGATACTGTTATATCAGGAAAGGAGCCA Found at i:183627 original size:6 final size:6 Alignment explanation
Indices: 183616--183628 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 183606 TATGTTCAAC 183616 AAAAAG AAAAAG A 1 AAAAAG AAAAAG A 183629 GAACAAATAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00 Consensus pattern (6 bp): AAAAAG Left flanking sequence: Indices 183116 -- 183615 TTGATTCAGACATGCAAACTAATACTATACCCTCTCATTCCATACCAATGTCTATGCAAAAATAT GGCATCTATCATGGCGATGATGACTCTACCTTAAACAATGTCTTCGATAAAGCCGTACTGACTAT GAATTCATCGCGACACCCAAAAGAAAGGCGCGATACTGTTATATCAGGAAAGGAGCCAACATCCT TAACCAGTTCTAATAGAAAATTTTCTGTTAGCTCGAATTTAACTTCAACAAGGTCTCCTCTTTTA CGAGGACATGGAAGAACTTCATCGACGGCCAGTAGTGAACACATGAAAGCCCCAAAGGTTTCTGA CAGTGTATTGCATAGGGCAAGGAAGAGCACGTTGACGTTAAAGCAGGACCATTCTCAACCTAGTG TTCCATCAAGTGTCCATAAAAGCTCGAAAGAGGGGAACATCCTTATTGAGAAAACCACCGATTAT CTAGTGTCGAAACCGAAGGCCTCACAGTTATCGAATATGTTCAAC Right flanking sequence: Indices 183629 -- 184128 GAACAAATACTAATTCTGTAGATGTGTTAGAATATTTTTCATTTGTTTGCGGAGATAAAGTACCA AATTATGAATCAATGGGTCTCGAAATATACATTCAAGCTTCCAAAAAATATAAAAGAAATTCCTT CACTACCAAAGTCCGAAAATCGTCTACCATCTTCGAAGTTATTGGATTTGCTTTATTTTTGTATT CTACTGAGAAAAAACCGGACAATTTTGAAGAAGATGGATTGACAGTTGAAGACATTTCTAATCCT AATAACTTCTCTTTGAAAATTGTCGATGAAGACGGTGAACCTTTTGAGGATAACTTTGGTAAACT AGATAGAAAAAGCACTATTCAATCAATTTCGGACAGCGAAGTTGTTTTATGTAAGGTTGATGATG CCGAGAAGTCTCAAAATGAAATTGAAACACCTTTACCATTTGAAACTGGTGGGGGCCTAATGGAT GCTTCTACTTTGGATGCTAACAGCAGTCACGATACAACTGACGGA Found at i:192510 original size:6 final size:6 Alignment explanation
Indices: 192499--192511 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 192489 AGTCATATTC 192499 TGAATT TGAATT T 1 TGAATT TGAATT T 192512 CCGTTGCGTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54 Consensus pattern (6 bp): TGAATT Left flanking sequence: Indices 191999 -- 192498 CCACCGATAACATAGATAAACCGGAACATGATAGCTGACATAAAAATACAACAGCAAACTGATAA AAAAACTTCCTTGCATCTGCTTCCAATCCAAACATAAAATATGTTATACTGACAAAAATCATGGT CATCGCGAAATCGTCAGAGAGGAAAAGTGAAATTTTTCTAGCTACGATGAATGCCAAAGGTGTTA CCGAGCCCTCTGCTCTTTCTCTGTCATATAACGCAATATCCTGCTCACAAAGTCGATAAGTATCA AAAAGCAAATACAAGTAACATTGCAAAATTGTGGACGCGTAAAGACATGCGGTTGTTGTCCTTAA ACCACCTATACTGCTTTTGTCAGGTTTATAGTAAATCCAACCGCAAACAGTACCAATAATCAACG GTTCTGCAAAAGTAGATATTAAAGTAACGTAATCTGAAAAATTTAATTTGAAATTTCGCCTTGTT AGCACCGTAACTTGCTTCCAAAATGGCAGTCTGGTAGTCATATTC Right flanking sequence: Indices 192512 -- 193011 CCGTTGCGTTGCTTATATAAGATTCTGCCTGTAGTTGCAAATGAGTTCTCTCATAATCATGCCAA TGATCAATCAATGAATTTAGCCGACTTTGCGTGGCAGCTTCTTCTTTATCAGATCTAGAGTCTAC GCTTGATAAATCAATGAAATAATCTGCTGGATTTACCAGCTGGGGTACGTGATAACCAATAGACT CAAAATAAGGGATAGTATTATCCATTTTGTCACAATATACCACATTTCCCTTTGACAAAATACAA ACCTGGTCCAATAAAAACAATATATCCGATCTCGGCTGATGAATTGACATGATAAAAGTCCTGCC ATCTTCTTTAGCTAATTTTTTCAAAGTTTTAATAACCAAGAAGGCAGAATATGCATCCAGTCCAG TGGTAGGCTCATCTAAGAACATGATGGAAGGGTTTGAAATCATTTGAGTACCAATACTTAGTCTT CTCTTTTCACCACCAGAAAGACCCCTGTGCGAGTTGTCCCCCACA Found at i:197091 original size:5 final size:5 Alignment explanation
Indices: 197081--197098 Score: 36 Period size: 5 Copynumber: 3.6 Consensus size: 5 197071 ATATATTACC 197081 ACTAT ACTAT ACTAT ACT 1 ACTAT ACTAT ACTAT ACT 197099 TATTGCTATT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 13 1.00 ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39 Consensus pattern (5 bp): ACTAT Left flanking sequence: Indices 196581 -- 197080 TCCGCTGCATGGTCGTGCGGTCGTAGGTGGTTTAGTAGTGATAAAGATGACCACGACGATGTGGT GACGAGGATTAAAATTGCCCCCATAAAGAGAACTAACGAGCCATTGGATAAGAAAAGAGCTCGGT TGATATATCAATCACGCAAAAGAGGGATCTTGGAGACGGACTTGCTGCTATCTGGGTTCGCTGCC AAATATTTGAAGAAGATGAACGAAGAGGAACTGGAAGAATACGATTCGCTATTGAATGAGTTGGA CTGGGACATATACTATTGGGCCACAAAAAATTTCAAAACCAGCCCCTTGCCTGACAAGTGGGCCA ATTCTAAATTGCTGAAGCAGCTACAAGAATTCAGTGAAAATAAAGAGAAGGAAATTTTAAGTATG CCGGACTTGTCCAAGTATCAATGAATACAAGCCATTGAATTACTATCACTTTTTTTTATTTGTAT ATGACTTGTAAATAAACCGGAAGAGAAAGAAACTTATATATTACC Right flanking sequence: Indices 197099 -- 197598 TATTGCTATTATTATTATTCATTATTAGTATTATAATATATTATTGATATTGATATTGATATTGT TATTGTTATTGTTACTACCACTGTTACTATTACTATTATTATTGTTGTTGCACCATCAAAACCCT TCAAGAGCCTTTGTAGCTTTGTCTAATCTTTTCAGTCCTTCTTCATAGCGGTCCGGATCAAGAAC CATGTCTGCTGTTAACCTGGACAAAGAGTCTACTAGTCTCTCCAGGGCACGTTTCTCCTCAATTT TCATCCCCAGTTGCGCAAATTCAGACCCGATTAAGGTTCCCTTTGTCACACTCAACAGTTGATTT AGTGTGTCGATATCAAAGGATCGCAATTCCTTCACAGATTTTTTTTTATTGAGCTTTTTTTTCGT ATCCTTCTTGAGTTTAGTTTTCTTGGGCGTTTCCTCAATGATGTCCTCGTACATGTCATCATCTT GTTTGTTTGTCGAAGTAGAGGTATGATTTGCCCTATCATGAATAG Found at i:206042 original size:6 final size:6 Alignment explanation
Indices: 206031--206045 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 206021 ACTGGTATGT 206031 ACATAC ACATAC ACA 1 ACATAC ACATAC ACA 206046 CATATATATA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.53, C:0.33, G:0.00, T:0.13 Consensus pattern (6 bp): ACATAC Left flanking sequence: Indices 205531 -- 206030 CTTTAGCGCATTATTATTGTATAATACTATTATGGTAATCGCCCCAAGACTATTCACCCCTAAAC ATGAATACTGCTCATCCCCTTGTGTAGCTGACACTTTTTCATTCAGACAATTAACCGCAGTAGTT GTAATTCTATCGATTAAATCACGATTAACAGCAGGGAAGGAGCCTTGCCATATGGGGACTACTTC TTGGAACCCCAACACATATAGATCTTGCAATTCCAATTGGGAGATGCCGTCATCGTAGGGGAAAA GCAATTGCTTAACGATTGCTTTCGAATTTTCAACGGGAAATTCCTTACCACAATTGAATGTAGTT ACAGATACCTTCCAATTCGTTTTGTTCATTCGGTCAGAATCCTGCTGTATTTTCTTGTCTCACTT TTCTTCTTTGTTAGCCTACTCTTACCTCTTCAGTTTTGTTCTTTTCACTGTATTTTCCTTTTTTC ACGCTATAACAACAATAAAAAAAGGTTATCATTTAACTGGTATGT Right flanking sequence: Indices 206046 -- 206545 CATATATATATGTACTCATATATTTATGTCTATCAATAAAGTAAAATATATGTTATTTAGGCGTT TCTTGACTGAATGACATCGCATGATGTAGACACCACCAAGTCATGTAACTCGCGTGGGCCACTTG ACGCTATAACTCCCTTCGTAGCTAGCGTTCTACCGTTACCGAAGTCTAGAGGAACATCTTCCATG GCATCTGTATGGATACCTCCAGCTTCATGGACAATAACGTTGCCTGCAGCATGGTCCCAGATCTT TTCTTGGTAAGAAAGTTTGATAGGCAGACGTAAATATACGTCTGCTAAGCCCAATGCTAACAAAC AGTACTTGGCTTGAGAATCCAAGTGCAAAGATTTGGATATATTTAGTTTGTTTTTGATAGCAGTT TGTTCATCATGAGAGGAGTGTCCCTTTTCAACTCCCTCTAAAGTAATCATGTCTTTAGTGTCTTT TAAGTGTCTAACGTGGATTTTGGTCCATGACTCTGCATCTGAAGA Found at i:216645 original size:6 final size:6 Alignment explanation
Indices: 216634--216646 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 216624 CCTTAGCCTC 216634 TAGCCA TAGCCA T 1 TAGCCA TAGCCA T 216647 CATGCAAGCG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23 Consensus pattern (6 bp): TAGCCA Left flanking sequence: Indices 216134 -- 216633 CATATCTATTATAGTGGGGAGAGTTTCGTGCAAATAACAGACGCAGCAGCAAGTAACTGTGACGA TATCAACTCTTTTTTTATTATGTAATAAGCAAACAAGCACGAATGGGGAAAGCCTATGTGCAATC ACCAAGGTCGTCCCTTTTTTCCCATTTGCTAATTTAGAATTTAAAGAAACCAAAAGAATGAAGAA AGAAAACAAATACTAGCCCTAACCCTGACTTCGTTTCTATGATAATACCCTGCTTTAATGAACGG TATGCCCTAGGGTATATCTCACTCTGTACGTTACAAACTCCGGTTATTTTATCGGAACATCCGAG CACCCGCGCCTTCCTCAACCCAGGCACCGCCCCCAGGTAACCGTGCGCGATGAGCTAATCCTGAG CCATCACCCACCCCACCCGTTGATGACAGCAATTCGGGAGGGCGAAAAATAAAAACTGGAGCAAG GAATTACCATCACCGTCACCATCACCATCATATCGCCTTAGCCTC Right flanking sequence: Indices 216647 -- 217146 CATGCAAGCGTGTATCTTCTAAGATTCAGTCATCATCATTACCGAGTTTGTTTTCCTTCACATGA TGAAGAAGGTTTGAGTATGCTCGAAACAATAAGACGACGATGGCTCTGCCATTGTTATATTACGC TTTTGCGGCGAGGTGCCGATGGGTTGCTGAGGGGAAGAGTGTTTAGCTTACGGACCTATTGCCAT TGTTATTCCGATTAATCTATTGTTCAGCAGCTCTTCTCTACCCTGTCATTCTAGTATTTTTTTTT TTTTTTTTTGGTTTTACTTTTTTTTCTTCTTGCCTTTTTTTCTTGTTACTTTTTTTCTAGTTTTT TTTCCTTCCACTAAGCTTTTTCCTTGATTTATCCTTGGGTTCTTCTTTCTACTCCTTTAGATTTT TTTTTTATATATTAATTTTTAAGTTTATGTATTTTGGTAGATTCAATTCTCTTTCCCTTTCCTTT TCCTTCGCTCCCCTTCCTTATCAATGCTTGCTGTCAGAAGATTAA Found at i:226298 original size:6 final size:6 Alignment explanation
Indices: 226287--226299 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 226277 AAATAGAAGC 226287 TATACA TATACA T 1 TATACA TATACA T 226300 GTCGCTAAAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38 Consensus pattern (6 bp): TATACA Left flanking sequence: Indices 225787 -- 226286 ATAACATTACATTTCATATCCTTTAAATTGGATTCCAAAGTTTGGAAAACCACTTCTTTTGGTGT GTTATTTATGCTGTAGACTTTAACTGGAGTTTGAGCATTTAAAGCAGTGATACATGTCATGGCAT AACATCTGTGTGCTGTGATAGTTTTGACATCAGCTTCGATACCGGCTCCACCACTTGGATCTGTT CCAGCAATGGATAAAACTGTTGGCAACTTTTCGTTGCAGGCTAAAGTAAGATATGGTGGAGGCGT GTTGATGCTAACTGTAGAATAGGTCATAGTAAAATGCGAGACGTTTTCCTTATATATTATTTATT AATCTGTCTAGTATCATTGAGAGAAAAATAATAACGCAAGGAATGCAACCTTTATCGAAGTCTCA GTATGCTTTGTCTGATGGTTTAAATAATAGGATTTTTTCTGCCAGCTGGCATAGCTCTAAGGGTT TCCTAACCTTCATCGGGGATCATTAATCTATCAGAAAATAGAAGC Right flanking sequence: Indices 226300 -- 226799 GTCGCTAAAGAAGTACGGAGGGCTTGTGTAATAAAAGGCAACACAATACGTGGCTGCTAGAATGG ATTCATCTTACACGCGGTCATATTAGGCTAAACGGCACATGTTAACTTTTTTCACATTTGTAAGT AAAAGTAATAGATCCAGTTCCCTTTATAGGATAACTGGCAACGATGGGGAACGTTGACAGAAATA CTGGGCCCAAAAGAGGATAGAAAAAGAAAAAATAAAGTGTAATCAATAATTAATCAATCTATCAA AAGTTATATACATTGCAATGTTGAAATTAAAAAAATTCAACAAAAAATTTGCGCAAGCCCGGAAT CGAACCGGGGGCCCAACGATGGCAACGTTGGATTTTACCACTAAACCACTTGCGCTGAATTTCTT GATGGTATTACATCTCAGGATAGCATACCTCAGTATGACAATACATCATCTCGTAAACGCTCATA TGAAACAACCTTATAACAAAACGAATAGAATGAGCAACATGAGAT Found at i:226524 original size:6 final size:6 Alignment explanation
Indices: 226513--226525 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 226503 AAAAGAGGAT 226513 AGAAAA AGAAAA A 1 AGAAAA AGAAAA A 226526 ATAAAGTGTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00 Consensus pattern (6 bp): AGAAAA Left flanking sequence: Indices 226013 -- 226512 CGTTGCAGGCTAAAGTAAGATATGGTGGAGGCGTGTTGATGCTAACTGTAGAATAGGTCATAGTA AAATGCGAGACGTTTTCCTTATATATTATTTATTAATCTGTCTAGTATCATTGAGAGAAAAATAA TAACGCAAGGAATGCAACCTTTATCGAAGTCTCAGTATGCTTTGTCTGATGGTTTAAATAATAGG ATTTTTTCTGCCAGCTGGCATAGCTCTAAGGGTTTCCTAACCTTCATCGGGGATCATTAATCTAT CAGAAAATAGAAGCTATACATATACATGTCGCTAAAGAAGTACGGAGGGCTTGTGTAATAAAAGG CAACACAATACGTGGCTGCTAGAATGGATTCATCTTACACGCGGTCATATTAGGCTAAACGGCAC ATGTTAACTTTTTTCACATTTGTAAGTAAAAGTAATAGATCCAGTTCCCTTTATAGGATAACTGG CAACGATGGGGAACGTTGACAGAAATACTGGGCCCAAAAGAGGAT Right flanking sequence: Indices 226526 -- 227025 ATAAAGTGTAATCAATAATTAATCAATCTATCAAAAGTTATATACATTGCAATGTTGAAATTAAA AAAATTCAACAAAAAATTTGCGCAAGCCCGGAATCGAACCGGGGGCCCAACGATGGCAACGTTGG ATTTTACCACTAAACCACTTGCGCTGAATTTCTTGATGGTATTACATCTCAGGATAGCATACCTC AGTATGACAATACATCATCTCGTAAACGCTCATATGAAACAACCTTATAACAAAACGAATAGAAT GAGCAACATGAGATAAAACTCCGCCTCCCGTAGTTGAACCACCCAAACGTATAAATCCCTGAACA ATTAGTTTAGATCTGAGATTCCTCGCTTTCATCATTTAGTGTAATTCATATTTTATATGATATAT AGAATAAGCAACATCCCATGAATCAAGCTGATAATCCGTTTTGGCAACTGATTACTTCCCAAAGA CTCCTTATATTAGGATTGTCTAGACACCCCGGTATTACTCGAGCC Found at i:230025 original size:1 final size:1 Alignment explanation
Indices: 230019--230035 Score: 34 Period size: 1 Copynumber: 17.0 Consensus size: 1 230009 TATGTGAATC 230019 TTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTT 230036 GGGACTGCTA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 16 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 229519 -- 230018 AGAACAGACATGTAATTATTACTGATGATGAGGAAGAGGAGCAACGGCGACATGCTACAGAAGAG GAAGATCGCGATAGTGACTTTTACGAGCATAATGATGATGGTTTTGTAAGTGGTGATAGCCTTGA TGAGGATCAGAAGGAGGTTACACGGATACAATCGAGTTCTGATTCCGAAGATCGTTCACTTTCGT ATTCCGGCTCCAGCGATGTCAAGGATAACAATGACGATAACACGGAAGAATTAGATGACCCACAA CCGAAAAGGCAGAAACGCTTCCGTGTAGTTCTAGGAGACAGTGACGATGAATAATCTGAACATTT TAACTAGCGGGAACGGCATATGTACGGAACTTTTATGTATGTTTTTAAAAAATTTCCTTTCTATC CTTATTACATTAAGATTTTTAAGCGATAGTAGGATCGGAAATATAAGCACTCGTTTATGATATAA ATAGGTCAAGAATTTCGTAAAGTAAAATCAATACATATGTGAATC Right flanking sequence: Indices 230036 -- 230535 GGGACTGCTATTGGTATTTTTTTAGCGTCACGTTAATCAGCCCAATTATGTGGGGGTTATGCAAG AAGCATTTTCCGAGCAATAAAATTCAAGTGCAGGAGAGAAACAAAGCATTAAAACCAAAGAAGAG TGGCAGCGAACATAAGACAAAGCAACTGTTTCCTGTATTCAATTGCAAGAAGAAGGAAAAAGGGG TAATGATACGGTTTGCGATTCTACGTAATGCTAACACATCTCTACTGTCCGCGAGAAGTATATGC TTATTTACCCAGGCGCCTACCTATTGTCATGTAAGGTTGAATACCTTGAATAAAAGCATTACAAC TAAAAGAAATTCATTGACAGAGTCGAAAAGGCATGTCCATGATGGCAAGCATTTTTTTACGACGC CACATCAACAGCAACAGACGAAGTTGGGGGAAATTGAAGAGGGACACAGTCCTAACATAAAAGGA GAGGACTTGAGAAGCATTGGTCAAGCAATAACACATCAGCGAAAC Found at i:236083 original size:3 final size:3 Alignment explanation
Indices: 236075--236091 Score: 34 Period size: 3 Copynumber: 5.7 Consensus size: 3 236065 GAATATCATC 236075 CAA CAA CAA CAA CAA CA 1 CAA CAA CAA CAA CAA CA 236092 GAACACGAAC Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.65, C:0.35, G:0.00, T:0.00 Consensus pattern (3 bp): CAA Left flanking sequence: Indices 235575 -- 236074 TGGAAGCTGCGAAGGAAGTCTACAAGATTCACCAGCAGTTGCTATTCAAAGCAAGGCTACAGCAA CAACAAGCACAGGCTCAAGCACAAGCTAATAACAACAACAACGGCCTCCCCCAAAATGGTAATAT TAACAATAACATAAATATTCCTCAACAGCAGCAAATGCAACCTCCCAATTCAAGTGCGAACAACA ACCCTTTGCAACAGCAATCATCACAAAATACCGTACCAAACGTCCTCAACCAAATTAACCAAATC TTTTCTCCAGAGGAGCAACGCAGCTTATTACAAGAAGCCATCGAAACCTGCAAGAATTTTGAAAA AACACAATTGGGTAGTACGATGACGGAACCTGTCAAGCAAAGTTTTATTAGGAAATACATTAACC AAAAGGCCCTGAGAAAAATCCAAGCTTTGAGAGATGTTAAGAACAACAATAACGCTAACAACAAC GGCTCGAACCTTCAGAGAGCCCAAAATGTCCCTATGAATATCATC Right flanking sequence: Indices 236092 -- 236591 GAACACGAACAATAATGACACCATTGCCACTTCTGCTACACCTAATGCTGCCGCTTTCTCTCAGC AACAGAACGCAAGTTCTAAATTATATCAGATGCAACAACAGCAACAAGCTCAAGCTCAAGCTCAA GCTCAAGCTCAGGCACAGGCTCAAGCACAAGCTCAAGCACAGGCGGCACAAGCGGCGCAAGCGCA AGCACAAGCACAAGCACAAGCACAAGCACAGGCACAGGCACAGGCACAAGCCCAGGCGCAGGCCC AAGCCCAAGCCCAAGCACAAGCACAAGCACACGCTCAGCACCAGCCCTCCCAACAACCACAACAA GCTCAGCAACAACCTAACCCACTACATGGGTTGACACCTACTGCAAAGGATGTCGAAGTAATTAA GCAATTGTCCTTGGATGCTTCTAAGACCAACCTAAGGCTTACGGACGTAACAAATTCTTTATCCA ATGAAGAAAAGGAAAAAATTAAAATGAAGTTAAAGCAAGGTCAAA Found at i:237939 original size:6 final size:6 Alignment explanation
Indices: 237928--237940 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 237918 TCGGCAACCC 237928 AAGAAA AAGAAA A 1 AAGAAA AAGAAA A 237941 GCCAGCGTAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00 Consensus pattern (6 bp): AAGAAA Left flanking sequence: Indices 237428 -- 237927 TCTCCTATGGGTGCACAACCATCATATAATAGTGCCATTATAGAGAATGCATTCAGAAAGGAAGA ACTCTTGTTAAAAGATTTGGAAATCAGGAAGTTGGAGATATCTTCTCGTTTTAAACATCGCCAAG AAATTTTCAAAGATTCTCCTATGGATTTGTTTATGAGTACGCTGGGTGATTGCTTAGGTATCAAA GATGAAGAGATGCTTACGTCATGCACTATCCCAAAGGCTGTGGTTGATCACATCAACGGCTCTGG CAAAAGGAAGCCTACAAAAGCGGCTCAAAGGGCTCGCGATCAAGATTCCATTGACATTTCCATAA AAGACAACAAATTGGTTATGAAGAGTAAATTCAATAAGAGCAATAGGTCGTATTCGATAGCGTTG TCCAATGTAGCTGCTATATTCAAGGGTATCGGTGGTAACTTTAAAGACTTGTCCACTTTGGTTCA TTCATCATCGCCGTCCACATCTTCTAATATGGATGTCGGCAACCC Right flanking sequence: Indices 237941 -- 238440 GCCAGCGTATTAGAAATAAGCCCGCAAGATTCGATAGCCTCGGTGCTATCACCAGATTCAAATAT AATGAGTGATTCTAAAAAAATTAAAGTAGATTCTCCTGATGACCCATTCATGACAAAATCAGGAG CCACAACTAGTGAAAAACAAGAAGTAACAAATGAAGCTCCATTTTTAACTTCTGGGACTAGTTCA GAACAATTCAATGTATGGGATTGGAATAATTGGACAAGTGCTACTTGAACATTTGAAGTTTCCAT ACTTTTGATACTTTTGAAGTTACTTCGTTTGGTGTTATGGTCACCAACATCTTTTTTTTCTCCTT CTTTCAAACTCTTTTTTAACTCCAGAAAAGAAATTCTTTATTTCACAAAAATTTCTCCCCACTTT TAATGTAATTTTTCTTTATATAATATATATATATATATACATGAGTATCAATACAATATAACCTA ATCTAGCTTTTTATCCAATGGACTTGACTATCATCAGTACTAGAA Found at i:239073 original size:6 final size:6 Alignment explanation
Indices: 239062--239075 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 239052 GAGTTTAATA 239062 CAGTGT CAGTGT CA 1 CAGTGT CAGTGT CA 239076 TTTGCAGGCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29 Consensus pattern (6 bp): CAGTGT Left flanking sequence: Indices 238562 -- 239061 GTAGCAAAGTGCCACTTCAAGCAATTATAGGAAGAAAGCACTACTCCTATAAAATATGGCACACT ATCCACCTTCCAAGGATCAATTGAATGAATTGATCCAGGAAGTTAACCAATGGGCTATCACTAAT GGATTATCCATGTATCCTCCTAAATTCGAGGAGAACCCATCAAATGCATCGGTGTCACCAGTAAC TATCTATCCAACCCCAATTCCTAGGAAATGTTTTGATGAGGCCGTTCAAATACAACCGGTATTCA ATGAATTATACGCCCGTATTACCCAAGATATGGCCCAACCTGATTCTTATTTACATAAAACAACT GAAGCGTTAGCTCTATCAGATTCCGAGTTTACTGGAAAACTGTGGTCTCTATACCTTGCTACCTT AAAATCTGCACAGTACAAAAAGCAGAATTTTAGGCTAGGTATATTTAGATCAGATTATTTGATTG ATAAGAAAAAGGGTACTGAACAGATTAAGCAAGTCGAGTTTAATA Right flanking sequence: Indices 239076 -- 239575 TTTGCAGGCCTTAGCGAGAAAGTTGATAGATTGCACTCTTATTTAAATAGGGCAAACAAGTACGA TCCTAAAGGACCAATTTATAATGATCAAAATATGGTCATTTCTGATTCAGGATACCTTTTGTCTA AGGCATTGGCCAAAGCTGTGGAATCGTATAAGTCACAACAAAGTTCTTCTACAACTAGTGATCCT ATTGTCGCATTCATTGTGCAAAGAAACGAGAGAAATGTGTTTGATCAAAAGGTCTTGGAATTGAA TCTGTTGGAAAAATTCGGTACCAAATCTGTTAGGTTGACGTTTGATGATGTTAACGATAAATTGT TCATTGATGATAAAACGGGAAAGCTTTTCATTAGGGACACAGAGCAGGAAATAGCGGTGGTTTAT TACAGAACGGGTTACACAACCACTGATTACACGTCCGAAAAGGACTGGGAGGCAAGACTATTCCT CGAAAAAAGTTTCGCAATAAAGGCCCCAGATTTACTCACTCAATT Found at i:242807 original size:3 final size:3 Alignment explanation
Indices: 242799--242816 Score: 36 Period size: 3 Copynumber: 6.0 Consensus size: 3 242789 ACTAAGAAAG 242799 TAA TAA TAA TAA TAA TAA 1 TAA TAA TAA TAA TAA TAA 242817 AAAGCTTTAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 15 1.00 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (3 bp): TAA Left flanking sequence: Indices 242299 -- 242798 GGGCAAATAGATGCACACTAACAAGGACCACGCAAGGATTGACGTAAACGCAACAATAAGCAGGA GATTCAGCAGGTAGTATCCAAATATTAGGAAAAATAGATGCAAATAATCCGAGTTTCCCACGGAT TCGCTAATTCCCTTCAAAGGCGGTTAGTATGACGGCTTAAAAAACATGATCTGCTTATTGGAACA TCAACATACTTTATACGGATACCAGATGATCTGGTGCGACGACTCTAGGTCTTTCCAAAAATTGT CTTTAACAAGCATAGCATTCTTGTACCATCGAACTATCGGAGCCTTGTATGCCATCCAAATTTTT GATTTCTTATGGTTCCCTTGGTCTTGGATGGGGAGTAATTGTGGTTCCTCCCCTTCTGCCAGTGG CGTAGAGGCATATGGATGTCTATGGTAATACCAATCAGGTTGGGGTCTAGTCGACATGTTTGCTT GGTGTCTTAGCAGCTCTTATAGTTCTAATGCTATAACTAAGAAAG Right flanking sequence: Indices 242817 -- 243316 AAAGCTTTATATAATGTTTTATTATGGAAGTTTCGTTTTTGTGGCGCGACGCGATCAGCCAAAAT CAGCGGAAAAATTCGTCGGAACATTTTTTTCTTTTTTGGCCAAGCTATTGTTACAGGTGGGGCAG GGGCAAGAGACGATATGTCATCGCGAAGCTGTAAAGACACTTGTCGAAGTGATAAAGCGCAAGAG CTGTTTGTCTACGGAACCAGCAAGTACTATCTAATAGCGTGTTCCAGAGAATAACAGCATTTTTC AACTTCTTTCTCCTGGTGTGAGTAATCAGTACGTGAAAAGAGAACGAAGTTAAAAAAAAAAACAA GAAAAAGAAACAAGATCAAAAGAAACGATAAAGGCTGGCTTATAAAATAATAGCATCGCGAACGA TCAATAAGGGGCCCTGTTTATTTTTAACAAAGTTTACATATTTCGTTTTCCTCTTTAAGCTGACA TCACGTCTATACCCTGTTTTATTCCTTGTTAGAAACATAACGGAG Found at i:250971 original size:5 final size:5 Alignment explanation
Indices: 250961--250973 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 250951 TCATTCCTTG 250961 TTTTA TTTTA TTT 1 TTTTA TTTTA TTT 250974 GTACCTCTCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (5 bp): TTTTA Left flanking sequence: Indices 250461 -- 250960 CGAAGTTAAGCTAACACAATGCATGATTATAATGAGAGAGTTATCAAAGATCATTAAGCAGCTCC TACCGGGAGATGTAAAAGGCCAAGAAAGGGTGAAGATTTTATTCACTGGTGATCTAAATTCTACA AGAGATTCGCTAGTTGTTAATTTTCTGCAAGGTCAGATAGTTAGCCATGGAGACCTTAATCTTAT TAACCCAATGAGGCCGTATTTGGATCGTTGTGTCTATGACGATATACCAAAGGATTATTTTGTAC ATACGTGCTATTCAGGAAAATTGAAGGGCATCTTTGATTACGTATGGTACCATGATTCAGATTTT TTACTAACTAAGATCCTAACCGGTAATGAAGTATCAGACGAATTGCTAGCGTCTAATCAGTTGGG TTTACCCAATGAAAACCATCCTAGTGATCATATACCTCTACTAACAGAATTCAAAATACTGTGAG GCATTACTATCTTGCCTTTTTTGTGCTTTTTTTCTTCATTCCTTG Right flanking sequence: Indices 250974 -- 251473 GTACCTCTCTTATAACCTTGTTATCATACTTTTTATTCATTTCAAATATTCTTTCCATTATTGCA GTATTCTTTAAGTAATATTCCGAACGTGTTCCATAATTTGGGTATGAATGTATTTATAGAAATAT ATAAAACGCATGATTTTTCTTTTTTATATGTATATTATACTATTAGAACTATGTAAAAAAATGCC AGCATGTATAGAGGAAGCTACAAGAGATAAGAAATAACTAGTAATAATATACAGTGTATCTCTAA CAAAATTGATATTGTGTGAAAACTAATGAAACTATTTCTTGCTCTTTTCAGCTTGAGCTTTCTTG AATGCTATCGATCTTTTGGTAACCCTACCTGTAGCGGATCTTTGTTTCTTCTTTTTTAGATGGGT GGAACCTTCGCCTTTCTTTGCTCTTAAACCTTCGATAGTTATCTCTTGGCCCAAAGTGGCTCTAT CAGCCTTACCTAAAATCTTTTTAGCTCTACCTGCTCTGGTTCTTT Found at i:256291 original size:5 final size:5 Alignment explanation
Indices: 256281--256295 Score: 30 Period size: 5 Copynumber: 3.0 Consensus size: 5 256271 TGCTGATATA 256281 GAATG GAATG GAATG 1 GAATG GAATG GAATG 256296 ACTTCAAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20 Consensus pattern (5 bp): GAATG Left flanking sequence: Indices 255781 -- 256280 GACCGAGCCAAGTGGTATATACTCTTCGTGGTCCGCTCAGACCATTGGGAGAAACTCCAAGACGG TACGTGAGTTTTTGGAGAAGAATTACGATCGCAAAGAACCACCAGCCACAGTGGAAGAATGTGTC AAACTTACTGTAAGATCTCTGTTGGAGGTAGTTCAAACAGGTGCAAAAAATATTGAAATCACTGT TGTTAAGCCGGACTCAGATATTGTTGCGTTGAGCAGTGAGGAAATTAACCAGTACGTCACCCAAA TCGAACAAGAAAAGCAAGAGCAGCAAGAGCAGGACAAAAAGAAAAAATCTAACCATTAAAAACGG CGATATATATTGGGCATAAAACCTATATAAAATAACAGCAATAATAAAAATGCAAAATATAACAT AGCACGGTATAGTTAGCTCATATATGTTTTAACGAGCCTTACATTATATCATTTAATACGATCTC ATGTTTTTCGGATTTCGGATCTCGCCAAGAAAACTTGCTGATATA Right flanking sequence: Indices 256296 -- 256795 ACTTCAAAAACTGCCCACTCATAAAGTTTGCTTCTTTAAATTGAATATATATTCACAGTCCGATT TGAAAAGCTTACCATCTGCCACACGCATTCTACTCCCTAATTTCCACACACAGTGTTTTTGTTTC TATAAAGAAAAAGAAAACCAAAATACTGTACTTTTTCCCATAATTTTCTTTCCATACGCCTATAT GCCCATACTTTGCCCGGTTTATCGAACAACGCTGTGAATTTTGCGAGTCATAAAAGACTTATCGT ACCATTATACCCCATTCATTATCAAAACATTATCTTATTTATATATCCAATTTAAAATCCTGTTT TTTAAGAAATAATTTCCAATACATTATTATAACTTATTGATACCTATTTAGAATCGATATTTGGT CTTTTCTTTGAGAAGAAAAAAGAAAAGAAATAAAAAAAAAGTTCACAAAAGTTTGTCATGGAACA CCAAGATAGTTCGCCACCTAGATTCAGGAACTCTGGCTCTAATAG Found at i:256438 original size:6 final size:6 Alignment explanation
Indices: 256429--256442 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 256419 TTGTTTCTAT 256429 AAAGAA AAAGAA AA 1 AAAGAA AAAGAA AA 256443 CCAAAATACT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00 Consensus pattern (6 bp): AAAGAA Left flanking sequence: Indices 255929 -- 256428 CTGTTGGAGGTAGTTCAAACAGGTGCAAAAAATATTGAAATCACTGTTGTTAAGCCGGACTCAGA TATTGTTGCGTTGAGCAGTGAGGAAATTAACCAGTACGTCACCCAAATCGAACAAGAAAAGCAAG AGCAGCAAGAGCAGGACAAAAAGAAAAAATCTAACCATTAAAAACGGCGATATATATTGGGCATA AAACCTATATAAAATAACAGCAATAATAAAAATGCAAAATATAACATAGCACGGTATAGTTAGCT CATATATGTTTTAACGAGCCTTACATTATATCATTTAATACGATCTCATGTTTTTCGGATTTCGG ATCTCGCCAAGAAAACTTGCTGATATAGAATGGAATGGAATGACTTCAAAAACTGCCCACTCATA AAGTTTGCTTCTTTAAATTGAATATATATTCACAGTCCGATTTGAAAAGCTTACCATCTGCCACA CGCATTCTACTCCCTAATTTCCACACACAGTGTTTTTGTTTCTAT Right flanking sequence: Indices 256443 -- 256942 CCAAAATACTGTACTTTTTCCCATAATTTTCTTTCCATACGCCTATATGCCCATACTTTGCCCGG TTTATCGAACAACGCTGTGAATTTTGCGAGTCATAAAAGACTTATCGTACCATTATACCCCATTC ATTATCAAAACATTATCTTATTTATATATCCAATTTAAAATCCTGTTTTTTAAGAAATAATTTCC AATACATTATTATAACTTATTGATACCTATTTAGAATCGATATTTGGTCTTTTCTTTGAGAAGAA AAAAGAAAAGAAATAAAAAAAAAGTTCACAAAAGTTTGTCATGGAACACCAAGATAGTTCGCCAC CTAGATTCAGGAACTCTGGCTCTAATAGAGTCACTGTGTATAACGGTACTACCCTGCCTACGATG CCCAAGAGCGCCACACCAACATCGAGCTCAACAACAGTTACTACGCATTTGCAAAATATTAAGGA GGAGGAAACAAACGATGACGAACTCACCCAAGTGGATCGTTCATC Found at i:259223 original size:1 final size:1 Alignment explanation
Indices: 259217--259229 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 259207 TAGCCCTACC 259217 TTTTTTTTTTTTT 1 TTTTTTTTTTTTT 259230 GGCAACACAT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 258717 -- 259216 GTACTCTCTGTCACAGAGGGTACTCATCGCATCAATCGCTCGTCGTTACAAACGCAATCTACCAT CGGATTATGCATTACCAATTTAAGAAACAAAGAAGGCATGAAGCTCAATGCCAAGGAATACGTGG AAATCCTGGCTCAGCAGCAACGCAAGGAAGATGAAAGGTATGCTGTTTTGGAAAGAAAATTTGCA TCTTGTAGATGGTGCAGTGATAAGGACCTGCAGTATTTGAAAAAGAAACGAATTTCCATGAATAA GATATGGTCTGATTATGTCCGATTTTACCGTGGAAAGTTGAACAACCCATGAAGGAAAAAGGTCT TGGCTATATATAACGGCAGACAAAATATAAGTATACACGTATATATGGTGGTAAACACGCATATA CTGTATGCCATGTATTTACCATTACATAGTTATTTACGCACTCTATAAAAAGTTAACATTGCATT TTAATAAATTCCTTAAATTACTCTAATTAGGATGGTAGCCCTACC Right flanking sequence: Indices 259230 -- 259729 GGCAACACATGGTCAACTTTTCTTCTCATGCTTTAAAAGGCGAGAAAAAATGAAAATTAGCAAAA TGACCTTTCCCTCCTTCCCACATTGAATATATACACTGGAAGATATAAGCAACCAGTACTGTAGA TAAAAAAGATCACTACGATATTCGTCGGACTCCAGTCGGAGTGCAGTGCCCGATTACTCTTAATT GCACGCATCGTGCCAAGTTTAATTGGTATTGCTCGAACATCTAGGAATAAGAGAAGGACTTACTT TAGAATGATGAAAGAGGTAGCAATTTGCAGCAGATTTTTCGTGATTGAATCAAACAAAGATTAAC CTTTACAGAACCGCTACACTGATACTAATGTAAGAAACATTTCCTTTATTTTTTTTCTAGCCCGT AGTGTACTCTTATAGTTTTGATATTTCCTTTCTATCTTTGTAAATGTAAATAATCACATTTGTCT GACAACACACTTGTTGCCACTAATTATTTCAACAAGCTGGCATAG Found at i:259669 original size:6 final size:6 Alignment explanation
Indices: 259658--259670 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 259648 TTTCTATCTT 259658 TGTAAA TGTAAA T 1 TGTAAA TGTAAA T 259671 AATCACATTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38 Consensus pattern (6 bp): TGTAAA Left flanking sequence: Indices 259158 -- 259657 GTTAACATTGCATTTTAATAAATTCCTTAAATTACTCTAATTAGGATGGTAGCCCTACCTTTTTT TTTTTTTGGCAACACATGGTCAACTTTTCTTCTCATGCTTTAAAAGGCGAGAAAAAATGAAAATT AGCAAAATGACCTTTCCCTCCTTCCCACATTGAATATATACACTGGAAGATATAAGCAACCAGTA CTGTAGATAAAAAAGATCACTACGATATTCGTCGGACTCCAGTCGGAGTGCAGTGCCCGATTACT CTTAATTGCACGCATCGTGCCAAGTTTAATTGGTATTGCTCGAACATCTAGGAATAAGAGAAGGA CTTACTTTAGAATGATGAAAGAGGTAGCAATTTGCAGCAGATTTTTCGTGATTGAATCAAACAAA GATTAACCTTTACAGAACCGCTACACTGATACTAATGTAAGAAACATTTCCTTTATTTTTTTTCT AGCCCGTAGTGTACTCTTATAGTTTTGATATTTCCTTTCTATCTT Right flanking sequence: Indices 259671 -- 260170 AATCACATTTGTCTGACAACACACTTGTTGCCACTAATTATTTCAACAAGCTGGCATAGCTGATC TTATTAATCTTGTAGACCGTTCAGGATGACTGGGCTATATTATGGCGTTAACTTTCGCGTTGGAT TACCTTTTTATGCGATGACAAGATGCCGATAATAGGTATTTACTTTCACAAGTACGTGTACGCAA TTCTAAAGGAAGTATATCAAATAAAAGGGCGTGGTACATAAAAGCTATATCCCTAGCATGACCAG TCTAATAGATTTGGGCAGATATGTTGAAAGAACGCATCATGGAGAAGATACAGAGCCAAGATCGA AAAGGGTAAAAATCGCAAAACCTGACTTGTCTTCCTTCCAACCAGGCAGCATTATTAAGATCCGT TTACAGGATTTTGTTACTTACACTTTAACCGAATTCAATCTTTCACCGTCTTTAAATATGATCAT TGGGCCAAACGGATCTGGAAAATCTACTTTCGTATGCGCAGTGTG Found at