TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: ref|NC_001147| [org=Saccharomyces cerevisiae] [strain=S288C] [moltype=genomic] [chromosome=XV] Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1091287 ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31 Found at i: i:542238 original size:6 final size:6 Alignment explanation
Indices: 542227--542239 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 542217 ATTTGGTAGG 542227 GATTTT GATTTT G 1 GATTTT GATTTT G 542240 GAGGGACAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62 Consensus pattern (6 bp): GATTTT Left flanking sequence: Indices 541727 -- 542226 AAACATTTAATGTGGAACCTTTAGAACCACAAGTAGCCATAATTAATGGTGCATTCCAATTATCT AATTCATTAATACAAACATCACCAACTTCTTCTCTGACTTTAGATAGAAGCCCACCAATCTTAGC TTCCAATGTTTGTTCTTCATTGCAACCAGGTTGTGTTTCTAATTCACCTTTATTGAATAATGTGA TCAATTCGTCACACTTATGGTATGCAATTTCGACTAGTTCTTCCTTCTTTTGCTTCAAATCATCA GCAGGTGTGACATCATTAATACCAATAGAAAACCCTCTATTACCTAAGAACCTAGCACATAGTTT TGCCATTCTATTCATAGCATTAGCGGCTTCTTGTGGGCCGTAATCTCTTAATATCGTATAAAACA CAGAATGCTTCTTACCATCACCTAGAACAGACTTGTCCATCACCCCACTTAAAATTTGAGAGCCT CTAATAATTACAAACCCGTCGTTTTGTGACATTTCATTTGGTAGG Right flanking sequence: Indices 542240 -- 542739 GAGGGACAAAGACTTTGTTCTTCGCGTCTAAGTTTATCACAACTGGGGAATTGTGATTTGGTTTT ATCAAAAGTGAAAAAACTTGTTTACCGGTCCATAAGTAATACGGTTTCATGATAGCAGGAGGTGG TATGTCAAAGTGCTCGATACCGTCAGACATCATAGACAATAGTTGAGTTAATGTAGCACGATCAT AGAAAGAATCCTTATGTGATATTAAATATGAACCAGTTATGAAATCTTGAGTAGCCGCAATAATA GGTTCACCTGACTTAGGTGTTAATAAGTTATTTTTCACACCCATTAAATTGATAGCTTCTGCACG AGCCTCTTCGGTTTGTGGAACATGCAAATTCATTTCGTCACCGTCGAAGTCAGCGTTATAAGGTG TGCAAACACATTCATTTAATCTAAAGGTTCTCCAAGGACGAATCTTAGCATAATGCGATAAAATT GATAATCTATGCAAAGATGGTTGACGGTTGAATAGGACCACATCA Found at i:543641 original size:6 final size:6 Alignment explanation
Indices: 543630--543642 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 543620 ACGCGGCTGA 543630 ACCAGC ACCAGC A 1 ACCAGC ACCAGC A 543643 GCGGCTTTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.46, G:0.15, T:0.00 Consensus pattern (6 bp): ACCAGC Left flanking sequence: Indices 543130 -- 543629 CCTGGTAGCATCGCAGGATTGACTGAGTCTGAGTTGATGTACATTGCAACAGTCAGTTGTAAGTA ATCCCAATGTTCCATCATATTGTTAATGGAAATACCCTTGTCAAGACCGGCTTTGATTAAAGACG AAGTCCAAACTATTTCCGTAAGCTTTACTGTCAAGTCATCTTCGTTAGATGCTGGAGAGTCTTGC ATCATAACGGAAGGCCTTATACAAACCGGAGGTGCGGGTAAATATCTCCATATGTAAGTCTCTGG TCTACCAGAGGGAACTGTTGCATCTATACCAAGCAGCTCACAATCTGCAGACTTAATTTGCTTGA AAAGATTTAAAGTTTTCAGTGGATTTAAATCATCCATACAACGTTTCACATAACGCTCTAGTTCT GGATTATGAGCAAGAACTTCCTTCCATTCTCCCACCCAAATATCCTTTTCAGGAGCGGACTTTTT ACCTACCCAACGAAATGTATCATGGATAATCTTCAACGCGGCTGA Right flanking sequence: Indices 543643 -- 544142 GCGGCTTTTTTCACGACACCATTAAGAGCACCACAATGCAGACACCTTCTTTGCTTTTTACATTG GTCCAAAATCTTCTTCAATATACCCATACGTCTTAAATTATCTACGCCTGGACGACGAAGTTCAT GCAAAAATTGTCTTTTATCTGTTTCTGATAACAATATGGCAGAACAGTTTTTACAGATACCTTGC AGTATTTGAATGGTGGCTTTGAAGTACCCAATGTGGAAAACAGGCAAAGCTAATTTTAAGTGACC AAAATGGCCATGACACGATGCCAAGTTGCCGTGACAGGTTGCACATTCAAGACTGGAGGAAGAGA CACCCATCTTGGGGTCTAAAGCACCGTTCGCCTTAGGAGCACGATCTTTTTCTAAATCGAAGAGA TCTCTTGTAGACACTTCCACTTCAGACTGGGCGACAATATCGGCAGCGCTTAAAGCGCTAAATTC CAGCCCTTTAATCCTTTTCGGGGTTTCACTTACAACGACTTCCTT Found at i:549074 original size:6 final size:6 Alignment explanation
Indices: 549063--549075 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 549053 GTCAGCGTTA 549063 TCAAAT TCAAAT T 1 TCAAAT TCAAAT T 549076 GCTCAGAAGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38 Consensus pattern (6 bp): TCAAAT Left flanking sequence: Indices 548563 -- 549062 CCTGCCTTTTTTGCTGTTTTTAGTTATTGGGATTGATTTCACTAAAAATCAAGACCACTAAATAA GGCTATTGTTTATTTTAATATTTATTGCACTTGTATGAAAAGTACCAAACTTTTGATACTGATAT TACACTTTTAGTCTTGAACTTTCTTCGTTAAATTGCTGACCTACTTTCTGTTCTTCGACTCCAAA CAACGATTCCCAAATGTATTTTCACAGGGCCGCATTATTTCTTTGATTTCGTTTTTTTCACCAAT TTTTTCTTGATGTGCTTCTTGACTTTTGTTTTCCTTTTTTCTCTTTTTGCATCTTTAGCTTCCTG CTTGCGCAATTTTTTTAAATCCTTGTCCTCATGTTTCTTCCCCTTTAAAACTTTTGGTTCATCAT CGTCATAGTACTCGCCCTCCTCCTCGTCATCTTCTTCAGATCCGCTTGAGCCGTCTTCTTCATCA TCTGAGAATTCCTCTGTGCCAGAACTACATTCGTGGTCAGCGTTA Right flanking sequence: Indices 549076 -- 549575 GCTCAGAAGCAGCAAAATTGCGTTCATTATCATGGGCAATCAAGCTTTTCAGTAAGTCAAACTTA CCATCAGTATACCTATCAAAATCTCTTTCCTCTAATCCACCCAATGATCTAACTAAATGCAGCGA TCTGAATATTTCATCTTCTGCCTCATCTTGTTCTGTAGATTTTATTGGTAGATTACTAGCAATGT ATGCAACCAAGGCGCTAATATTGTTATAATCACCTTTAAATTTCTCCAAAGTTTCTGATATGACA AATTGAAAAATAACCCTTTCAGGGAAAATACTTATACCCATCTTCTCGAAATAAAGGTTAACGTT TTTGATATCCATCCTTAAAAAATCTAAACTCATTGGATGTTCAGGTTCCACACTTTGGGAAACAT CGATCATATATAGTTTATCATCATGAACTATGGTGTTATACTCTGACAAATCGGCATGAACCAGG CGACAAACTTGGTACAGCAATCTCATATATGCCACCATTGTGTGA Found at i:549814 original size:6 final size:6 Alignment explanation
Indices: 549803--549815 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 549793 ATCTGGAATT 549803 TCTAAA TCTAAA T 1 TCTAAA TCTAAA T 549816 TCACCATCAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38 Consensus pattern (6 bp): TCTAAA Left flanking sequence: Indices 549303 -- 549802 CCTTTAAATTTCTCCAAAGTTTCTGATATGACAAATTGAAAAATAACCCTTTCAGGGAAAATACT TATACCCATCTTCTCGAAATAAAGGTTAACGTTTTTGATATCCATCCTTAAAAAATCTAAACTCA TTGGATGTTCAGGTTCCACACTTTGGGAAACATCGATCATATATAGTTTATCATCATGAACTATG GTGTTATACTCTGACAAATCGGCATGAACCAGGCGACAAACTTGGTACAGCAATCTCATATATGC CACCATTGTGTGATAATAATGGAAAATTTCATCACGATTCTTGTACGGATAATCTTTTAATTTAG GTGAGGCAAATCCATTACCTCGGCTTAAAAATTCCATAACTAAGACGTTGTTCTTAACTTCTATT GGCTTAGGAGCTGGAATGACGCCACTTTGATAAATTCTTTTCAGGTTCCTAAATTCCTTTTCAGC CCAAATTTTAATCATTTTCCTTGGATTATGTTGAGATCTGGAATT Right flanking sequence: Indices 549816 -- 550315 TCACCATCAACATATCTTTCACGATCTTTGAAGACTAGGATAGAGGTCTTATAAATCTTAATGGC ATATTCTGCACGGGATCCGTCTGTCTCTAAAACTTCATACTGGCCTGTTTCCTCATCTATTACGG GTGCCTTACCGGTACCTGCAAAAGCGTGGTAAACATTAGCTTCTTTCCCAGTACTTAAGCAACCG TTCAAATCTGCAATCACACCTCTGGTGACCATAGACTTCAAAAATCTCATAGTTCTCGGATCTAA GACATTTTCCACAGTCGCCCTATTTGCTTTATCCTTTGATGTTTTCGCTCTGCTGAATGATAATT CATCAGTTTTTATTTTGTGACTATACTTCTCTAAGAGCTGATTATTAATATGGTCCGAGGCACCT TGCGACACAGACAATGAATCAAATTTATCTTCCAAGGACATGACCTTCTAAAAATAACGGAGTTT GAATCTCTAAATCTGTTTTAACTTCTTTTTACTATTATTTTTAGT Found at i:550332 original size:5 final size:5 Alignment explanation
Indices: 550322--550337 Score: 32 Period size: 5 Copynumber: 3.2 Consensus size: 5 550312 TAGTCTTAGT 550322 ATCTC ATCTC ATCTC A 1 ATCTC ATCTC ATCTC A 550338 ATTTCTATAT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38 Consensus pattern (5 bp): ATCTC Left flanking sequence: Indices 549822 -- 550321 TCAACATATCTTTCACGATCTTTGAAGACTAGGATAGAGGTCTTATAAATCTTAATGGCATATTC TGCACGGGATCCGTCTGTCTCTAAAACTTCATACTGGCCTGTTTCCTCATCTATTACGGGTGCCT TACCGGTACCTGCAAAAGCGTGGTAAACATTAGCTTCTTTCCCAGTACTTAAGCAACCGTTCAAA TCTGCAATCACACCTCTGGTGACCATAGACTTCAAAAATCTCATAGTTCTCGGATCTAAGACATT TTCCACAGTCGCCCTATTTGCTTTATCCTTTGATGTTTTCGCTCTGCTGAATGATAATTCATCAG TTTTTATTTTGTGACTATACTTCTCTAAGAGCTGATTATTAATATGGTCCGAGGCACCTTGCGAC ACAGACAATGAATCAAATTTATCTTCCAAGGACATGACCTTCTAAAAATAACGGAGTTTGAATCT CTAAATCTGTTTTAACTTCTTTTTACTATTATTTTTAGTCTTAGT Right flanking sequence: Indices 550338 -- 550837 ATTTCTATATTCCACTATAAAATTTTTCACTCTTTCTGCGCGCGCCAATGTCCCCGCAACTACTC AATAGGTAACATGAGAATATTTCAGTTCGTAAGAGAGAAGAGATGAAGTTATTTGGGCTCTTTGC TCGAGGTTACAGAAGGGCCGCATTAGAGTGAATGAGCTGATGATATTTCGCCCAGTTCTACATTT TTTTTTTTTTGGAAGTATGACCTCTGTTAAATTTTTTTTTTTTTAAATTTCACTTTCTAAAGTCC CAGAAATCCGCTTGAATGTCTTACATATTGCAATGGATATGCTTGGGTGATCATACTTCCTGGCT TTAGATATTTGAAACTTAACTCTTGTCAACAAACTTCCTATGGAGTGTATAAGAATTGTAAGTTA TAACACCGGCGAACAATCGGGGCAGACTATTCCGGGGAAGAACAAGGAAGGGCGGTCTTTTCTCC CTCATTGTCATAGCAAGGTCATTTCGCCTTCTCAGAAAGGGGTAG Found at i:550536 original size:1 final size:1 Alignment explanation
Indices: 550530--550542 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 550520 CAGTTCTACA 550530 TTTTTTTTTTTTT 1 TTTTTTTTTTTTT 550543 GGAAGTATGA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 550030 -- 550529 CTCTGGTGACCATAGACTTCAAAAATCTCATAGTTCTCGGATCTAAGACATTTTCCACAGTCGCC CTATTTGCTTTATCCTTTGATGTTTTCGCTCTGCTGAATGATAATTCATCAGTTTTTATTTTGTG ACTATACTTCTCTAAGAGCTGATTATTAATATGGTCCGAGGCACCTTGCGACACAGACAATGAAT CAAATTTATCTTCCAAGGACATGACCTTCTAAAAATAACGGAGTTTGAATCTCTAAATCTGTTTT AACTTCTTTTTACTATTATTTTTAGTCTTAGTATCTCATCTCATCTCAATTTCTATATTCCACTA TAAAATTTTTCACTCTTTCTGCGCGCGCCAATGTCCCCGCAACTACTCAATAGGTAACATGAGAA TATTTCAGTTCGTAAGAGAGAAGAGATGAAGTTATTTGGGCTCTTTGCTCGAGGTTACAGAAGGG CCGCATTAGAGTGAATGAGCTGATGATATTTCGCCCAGTTCTACA Right flanking sequence: Indices 550543 -- 551042 GGAAGTATGACCTCTGTTAAATTTTTTTTTTTTTAAATTTCACTTTCTAAAGTCCCAGAAATCCG CTTGAATGTCTTACATATTGCAATGGATATGCTTGGGTGATCATACTTCCTGGCTTTAGATATTT GAAACTTAACTCTTGTCAACAAACTTCCTATGGAGTGTATAAGAATTGTAAGTTATAACACCGGC GAACAATCGGGGCAGACTATTCCGGGGAAGAACAAGGAAGGGCGGTCTTTTCTCCCTCATTGTCA TAGCAAGGTCATTTCGCCTTCTCAGAAAGGGGTAGAATCAATCTAGCACGCAGATTGCAAACACG GCTTAATAATATGCCTATCAGGCATTCACCCGTGTGACGAATCGCACACCGCTGCTCTCCTTAAT TCCCTAGAGTAGAAACCGAGCTTTCAGGAAAAGACTACGGCAGTAAAGAATTGCTTTACTGGGCG TATAAAACCGGGAGAATCAAGACATTCTAATGACTTGATTCAGGA Found at i:550570 original size:1 final size:1 Alignment explanation
Indices: 550564--550576 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 550554 CTCTGTTAAA 550564 TTTTTTTTTTTTT 1 TTTTTTTTTTTTT 550577 AAATTTCACT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 550064 -- 550563 TCTCGGATCTAAGACATTTTCCACAGTCGCCCTATTTGCTTTATCCTTTGATGTTTTCGCTCTGC TGAATGATAATTCATCAGTTTTTATTTTGTGACTATACTTCTCTAAGAGCTGATTATTAATATGG TCCGAGGCACCTTGCGACACAGACAATGAATCAAATTTATCTTCCAAGGACATGACCTTCTAAAA ATAACGGAGTTTGAATCTCTAAATCTGTTTTAACTTCTTTTTACTATTATTTTTAGTCTTAGTAT CTCATCTCATCTCAATTTCTATATTCCACTATAAAATTTTTCACTCTTTCTGCGCGCGCCAATGT CCCCGCAACTACTCAATAGGTAACATGAGAATATTTCAGTTCGTAAGAGAGAAGAGATGAAGTTA TTTGGGCTCTTTGCTCGAGGTTACAGAAGGGCCGCATTAGAGTGAATGAGCTGATGATATTTCGC CCAGTTCTACATTTTTTTTTTTTTGGAAGTATGACCTCTGTTAAA Right flanking sequence: Indices 550577 -- 551076 AAATTTCACTTTCTAAAGTCCCAGAAATCCGCTTGAATGTCTTACATATTGCAATGGATATGCTT GGGTGATCATACTTCCTGGCTTTAGATATTTGAAACTTAACTCTTGTCAACAAACTTCCTATGGA GTGTATAAGAATTGTAAGTTATAACACCGGCGAACAATCGGGGCAGACTATTCCGGGGAAGAACA AGGAAGGGCGGTCTTTTCTCCCTCATTGTCATAGCAAGGTCATTTCGCCTTCTCAGAAAGGGGTA GAATCAATCTAGCACGCAGATTGCAAACACGGCTTAATAATATGCCTATCAGGCATTCACCCGTG TGACGAATCGCACACCGCTGCTCTCCTTAATTCCCTAGAGTAGAAACCGAGCTTTCAGGAAAAGA CTACGGCAGTAAAGAATTGCTTTACTGGGCGTATAAAACCGGGAGAATCAAGACATTCTAATGAC TTGATTCAGGATGAGAGCTTAATAGGTGCATCTTAGCAAGCTAAA Found at i:553335 original size:3 final size:3 Alignment explanation
Indices: 553327--553343 Score: 34 Period size: 3 Copynumber: 5.7 Consensus size: 3 553317 ATCCGCGTCC 553327 TCT TCT TCT TCT TCT TC 1 TCT TCT TCT TCT TCT TC 553344 CTCATTATCA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65 Consensus pattern (3 bp): TCT Left flanking sequence: Indices 552827 -- 553326 CCGACTCATTTCTTTCTTAATCAATTGATAATTGTCTCGTTCACATACCTTGCCAAGACATAATT TGCGATCGTAGTTGGGTTTATGTTGTGTATGTAATTTATCTTTTCTCAAGGATCACACAGTTGTT TTAAGAAGGGAATGAGAAAGGGTCAACTGAGCTTTAAAAAGAAAAAAAATATTAATGCGGGTAAT GAGTTTCGTACAAAGACATTTCATGGCGTGTTCTCGCCAAAAATCATGGTAAAACCTCCCACACA GTAACCTCATACTAAATACTACAACATGTCATCACTCCATTTCTTTGCGATTGTACATACTAATA TATATAAACAAAGTAACGTCTCCTCTAATCCTCGTCTTCGTCGTCCTCGATGACCGCAACCCTTC TTCTTTTTGTCTCGCTCCTATCTTTTTCTTCTTCTTCCTCTTCTCTGTACATTGCTGCTCCTTCT CTTTTTAAATTTCTTAGACGAGAGGCGTTCTCTTCATCCGCGTCC Right flanking sequence: Indices 553344 -- 553843 CTCATTATCATCCTCTTCGTCGTCAAACGCAGCCTCCTCTTCCTCATCGTCGTCGACTAAAAAGT CATCTTCTTCATATTCATTTCTTCTCGAGGCTCCATAGGTAGTGGGTGAATTTTGCTTTCTAAAT CCCGTCTCAAAAGCGGCATCTGGGGATTCTTGTTTCTCCTTTTCTTTGAGCTGTCTTCTCCTTCT GTCTCTTAAAATCTGGCTTTGCTTTCTCTCTAACTCCTTCTTTTCCACTTCAGGATCCATACTTA CAATGTATGTTCCAGGACCCTTGCTTTGTCTTTGGTTCCTTCTTATAACAGCTTTACTTAGTTTT TGATGTATTTTTGAATTCGTCGAAGTTGGAATAAACATCAACGTCTTTTTTATTTCACCCCCTTC GTAACACTGGATCAACTCTTGTTGGTCATGCGATACTGTCAAAAAAGTGTTGCTCGTATCGTTGA CCAATATATCTGTACACTCTTCACCAACTTTTAGCGAATATGTAC Found at i:554318 original size:6 final size:6 Alignment explanation
Indices: 554307--554324 Score: 36 Period size: 6 Copynumber: 3.0 Consensus size: 6 554297 CGTCGTCTTC 554307 ATCACT ATCACT ATCACT 1 ATCACT ATCACT ATCACT 554325 TTTTTCAGTC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33 Consensus pattern (6 bp): ATCACT Left flanking sequence: Indices 553807 -- 554306 TCTGTACACTCTTCACCAACTTTTAGCGAATATGTACCGTCTGACCACTGCACTATTTGTGTATT TGATTCTTTAAAGACATGTTGGTCTTTGTCACGAGAGTATCTCCATCTAACAGTGTTTTCATCAA TCAGGCGGTCGTCCAGTTGATCCTCCCTAGAAGCTGAATTGCTTGCCCTTTCGTTTACTTTGGCC TCAAAACTTGGAGGGTCGAAAGGAATTGGATCGATAGTTAAAAAGTTGGGAATTCTAGCATAGAA AATTTCGTTGTGAGACGCCGTTTCATTCACATTAGCTTTACTTGGAATAATATGTCTGACAAGCT CTACATTTTCCTCTTTAAAAGTGTGAGTAGTCTCATCTTGATCAGAAAAGTTATTAGCATCCTCA CCATAAAATTTTCGGGTGTACATGGCTTGCTCCTCTGCTTCATCATCATCTAACCCGAGACTTTC TCTATGACGACTTCTATGGTTGATATTCTCTCCCTCGTCGTCTTC Right flanking sequence: Indices 554325 -- 554824 TTTTTCAGTCTCCGATTTTTTAACATCATCATCATCATCGTCATCATTGTCATCTCCAAATAAAT CATCTAGTTCTGCGTCTTCTTCTTGTTCCTCTTCTTTAGTATCATCATTTCCATTGACTTCCTTG ACATTATCATCTTGAGAGCGGCTTGTTTCCTCATTGCTTGTACTATTGGTGGTAACGCCGACGTT ATTGCTGATTTGCTCCTTCTGTGGTTGATCCTGTGGGCTTTCAGATGACATCTTAATTATAGTCC AGTATATCTAATTGGATTACTTTGATTGGACGCACCTAGTTTACGCAACCTATCTACTTAACGAC TTTCTTCAGCTTTCGTATTCACTTCTATGAGCTTGTTCTTTTTTTTTTTGTTTTTTCGTTTTTCT TTACGTAGCAGATAGTCACCCGTAACGATTGAATATGGCAAAGCTTTTTACATAATAATGGTACT TATGGCAATAGTGACATTTTACATAAACTCTTCATTGACTAAGAC Found at i:560814 original size:1 final size:1 Alignment explanation
Indices: 560810--560822 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 560800 AGGAAAAATG 560810 AAAAAAAAAAAAA 1 AAAAAAAAAAAAA 560823 GGCAGTTCTC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 560310 -- 560809 AGCCCCGGTCCTATTATAATAGGACGGATATGGTAAGACTTCATCAAAGATACCATTTGACGAAT ATTATCGATAAATTCGGGGAGGGGGACACTTTGGGGACCTGCTGAGCATGCATCGTTGGCACCCA AAAATATTGTGGCCATGACAATATTGGATTCATGCTTTAAAATCTCAGGAAGTATTTTCAACGCC CATCTAGAAGTGTACCCTTTGAACCCTCTTTGAAGAATATCCATTTTTCTCGTATATTCGTTGAC TAATGCGGCTCCAAGAGCATACTGATCTTTGCCATCTTCAATGGGCCTAGTATTAAAAGCAAATT CAGTAATGGAATCCCCAAATAACAGAAACTTCTCGTAATCCATATTTGGTCACAGTTTAAGCGTA CGAACAGATGATAATGTAGAGGCTAGTTCTTGGTTTCGTATGTGTTACCACGATGAGAAGGTGTA AAGTGCCCTTATTATTGCGCGCTTTATGCCGTATTAGGAAAAATG Right flanking sequence: Indices 560823 -- 561322 GGCAGTTCTCGAGTTTAGATTTGATATAATTAACGTGTGCTTTTCTCTATTGACCTTTGATGAGA TTGTATCAGCCAACTGGCTAATTCATTGAACGTTTTCCAAGGGTAGGACTGCTCAAACAGACTAA ATTTCTTTGCCAAATAGGGTGTTTTGAGTTTTGATCAGTCAACATTCTTGATCAATTCACAGTTG CTTAAAATAGAAAAAAAAATTGATCGGTATCACTAAAATTTTTAAGAAACTGAAAAGCACCACGG TTTTGACATTTATCTCTATTATAGCTTTTTGTACAAGACAAGGATAGCTGATTCAGGTACTAGTG GTGGAGAGAGCGGCATATTAAAATGGCATCAACTGCTCCCAATGAACAATTTCCATCCTGCGTAC GATGCAAAGAATTTATTACCACGGGGCATGCATATGAGTTGGGTTGTGATAGATGGCACACACAT TGTTTCGCTTGTTACAAATGTGAGAAACCATTAAGCTGCGAATCT Found at i:564311 original size:4 final size:4 Alignment explanation
Indices: 564302--564316 Score: 30 Period size: 4 Copynumber: 3.8 Consensus size: 4 564292 TGTTACTGGA 564302 TATG TATG TATG TAT 1 TATG TATG TATG TAT 564317 AATAAGTGAT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 11 1.00 ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53 Consensus pattern (4 bp): TATG Left flanking sequence: Indices 563802 -- 564301 TCCCCAACCCTATCTTTACCTTTCAAATATACGAGCCGTTGATGAGGTTAGTTAAATCTAAAAAA ATGATGGAAAACTTGCCATTTGTTGGAGGAAAGTTGTCCTTAGAAGCAAAGAATTCGGACACTTA TATGTCGAGCAAGAGCGCTTTAAAAAACATATTGGAAGACCTTCCAAGGGAACATTATAGGGTGT TAAGAGTACTGAGTGAACATATAGAAAAGGTTACACGGTACAGTCACTGGAATCGAATGACGCTT TATAATTTGGCTTTAGTTTTTGCTCCAGGTTTGATTCGTGATTTCAGTGGAGAAAAGGATATTAT TGATATGAAAGAAAGAAACTATATTGTCGCATTTATATTTGGGAACTACAAAGATATCCTGACGT AGCGCTATCCTCGGTTCTGCATTGAGCCGCCTTATATGAACTGTATCGAAACGTTATTTTTTTAA TCGCAGACTTAAGCAGGTAATTATTCCTTGCTTCTTGTTACTGGA Right flanking sequence: Indices 564317 -- 564816 AATAAGTGATCTTATGTATGAAATTCTTAAAAAAGGACACCTGTAAGCGTTGATTTCTATGTATG AAGTCCACATTTGATGTAATCATAACAAAGCCTAAAAAATAGGTATATCATTTTATAATTATTTG CTGTACAAGTATATCAATAAACTTATATATTACTTGTTTTCTAGATAAGCTTCGTAACCGACAGT TTCTAACTTTTGTGCTTTGACAAGAACTTCTTCTTCTTGCTTTAATAAAAACTGTTCCATTTTCG TTGTATAACTTGAATCATAAGCGCCAAGCAGTCTGACAGCCAACAGCGCAGCGTTCGTACTATTA TTAATAGCGACGGTAGCTACTGGAACACCTCTAGGCATTTGCACAATTGAATGTAAAGAATCTAC TCCATCTAGACAAGAACCTTTTACGGGCACACCGATGACAGGAAGTGGTGTCATTGCAGCCACCA TACCTGGCAAGTGAGCAGCCCCACCAGCTCCAGCGATAATTGTTT Found at i:565979 original size:6 final size:6 Alignment explanation
Indices: 565970--565982 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 565960 CATCAACATG 565970 CTCAAT CTCAAT C 1 CTCAAT CTCAAT C 565983 GTTAGCACAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31 Consensus pattern (6 bp): CTCAAT Left flanking sequence: Indices 565470 -- 565969 TCTGCCAACAACTTCGCCTTAAGTTGAACGGAGTCCGGAACTCTAGCAGGCGCATAACATAAGTC ACAAATATTGTCCTTGTGGATAGTCTCTACAATTGGGTAAGAAAACACTAAACCGTTAACAGATC TCACAATCATGACTGCTAATTCTTTAGTAAATGGTGCCCATTTTTCGGCGTACAAAGGACGATCC TTCAGTACTTCCAAAGCTTCCGGAATCATTTCCTTATTCTTTACAACGAAGTTACCTCTTCCATC GTATGCCAAAGTCCTCGACTTCAAGACGAATGGAAAACCCAAATCTCTTCCAACATTCAATAGGG ACGTCTCACTGGCTTGTTCCACAGGAACACTTTGGGTAACTGCTATACCATTTTTGATTAAATGC TCTTTTTGAATATATTTGTCTTGTATCAATCTGATTGTTTCTGGAGAAGGGTAAATTTTTAATTT GGGATGTTTTACTTGAAGATTCTTTAGTGTAGGAACATCAACATG Right flanking sequence: Indices 565983 -- 566482 GTTAGCACATCACATTTTTCAGCTAGTTTTTCGATATCAAGAGGATTGGAAAAGGAGCCATTAAC GTGGTCATTGGAGTTGCTTATTTGTTTGGCAGGAGAATTTTCAGCATCTAGTATTACCGTCTTAA TGTTGAGCCTGTTTGCTGCCTCAACAATCATACGTCCCAATTGTCCCCCTCCTAATATACCAACT GTTCTAGAATCCATACTTGATTGTTTTGTCCGATTTTCTTGTTTTTCTTGATTGTTATAGTAGGA TGTACTTAGAAGAGAGATCCAACGATTTTACGCACCAATTTATACATGAAATGCTCCATAATATT GTCCATTTAGTTCTTAATAAAAGGTCAGCAAGAGTCAATCACTTAGTATTACCCGGTTCGTAGCC ATGCAACAAGAGTCATTTGTCAGCATAGCTGTAATAATCAATCATGACGTAAGAAATGTATCATA ATTAAAAGTTGTTAAAGATGTCAGTGTTATGTTGGTGTTACAAAA Found at i:572177 original size:1 final size:1 Alignment explanation
Indices: 572171--572183 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 572161 CTAAGTAAAG 572171 TTTTTTTTTTTTT 1 TTTTTTTTTTTTT 572184 AGAAACTTTC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 571671 -- 572170 GTACGTAGAAATATTGGTTCCCTTTATGGATCCCTATATCATCGTGCAGAACTTCTCGTATATTC GATATACCTAAATTATAGCCCTTAACAATAATGAAATCCTAACGATTATCCCGAAAATTCACCTA TTTCTCAGTATATGAAATGTACATTAACGTAAACACTCATCTTGCTACCATCATTATTTATATTG ACATTAATGATCACTTGCTGCAACATTTTTTTATTTTTTCAAATCATATGAAACAAGTATTAATA AAAACACCGTTAACCCAACAATTAAAATCCGTGATAGTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATCGGGGTTCAATTCCCCGTCGCGGAGATTTTTTTGCTGATTTGATGTGTTCTCGAAC TTTGTGATGCCGAAAAAATCAAGGTAATTCCGCCATAGCTACTATATTAGCTCTAAAAAACATCT AAGAATAAAATGGTATTTCAATCATATGTACATATCTAAGTAAAG Right flanking sequence: Indices 572184 -- 572683 AGAAACTTTCTTTATTCATATTTTGAATCAATTCAATTATTTCGGAAAGATCCTCTACTGAAACG TCTACTAGTTCTTTATGTTCGAGCAGTAAATGTCCATTCACATGATTCTTGAGTAATACCGTGAA ACATCCAGCAGATCTACCGGATTTCATGTCGTCAAATGAATCTCCTACCATGATCATTTCCAAGG GCCTTATATTTAGCTTCGAGGCGATGTGTAATAATGGGTCTGGTTGCGGTTTTGTAGGCCTAAAC TCCCTTGTCACAATATAGTCAAACCTCGAAAGCTCGGATGGAATAAATCTTTTAACAAAAGTCTC TACCGGGGCTCCGACATTTCTAGTACATATGTTCTTGCTAATACCATTTTTCGTCAAATACCTCA TTATGTCAACCAGACCAGGCTGCGGTTGCATCTCCTTCATGGCTTTTGCCTCAACTAATTCTATT CTATCATGCGCTTCTTTTTTTTCTTTTTCTGTGGGCAATGTATCA Found at i:572667 original size:6 final size:6 Alignment explanation
Indices: 572656--572668 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 572646 GCGCTTCTTT 572656 TTTTTC TTTTTC T 1 TTTTTC TTTTTC T 572669 GTGGGCAATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85 Consensus pattern (6 bp): TTTTTC Left flanking sequence: Indices 572156 -- 572655 CATATCTAAGTAAAGTTTTTTTTTTTTTAGAAACTTTCTTTATTCATATTTTGAATCAATTCAAT TATTTCGGAAAGATCCTCTACTGAAACGTCTACTAGTTCTTTATGTTCGAGCAGTAAATGTCCAT TCACATGATTCTTGAGTAATACCGTGAAACATCCAGCAGATCTACCGGATTTCATGTCGTCAAAT GAATCTCCTACCATGATCATTTCCAAGGGCCTTATATTTAGCTTCGAGGCGATGTGTAATAATGG GTCTGGTTGCGGTTTTGTAGGCCTAAACTCCCTTGTCACAATATAGTCAAACCTCGAAAGCTCGG ATGGAATAAATCTTTTAACAAAAGTCTCTACCGGGGCTCCGACATTTCTAGTACATATGTTCTTG CTAATACCATTTTTCGTCAAATACCTCATTATGTCAACCAGACCAGGCTGCGGTTGCATCTCCTT CATGGCTTTTGCCTCAACTAATTCTATTCTATCATGCGCTTCTTT Right flanking sequence: Indices 572669 -- 573168 GTGGGCAATGTATCAATGAAATGAAGGATATCAATCGATTTGTCCTCCAATCCTATGGCGTTTCT CATTGCTGGAAACATCCAAGGCTGGGGTAGGCATAATGTGCCATCCATATCAAATACAACCGCTT TGATGTGTTTTAATCCCTGTAGTCCTTGTAGCTTTGTCATTATTCTGTGATACACTTTCAGTGAC TATTGAACCGTATATATTGCCCGACTATCCTAATGATTGTGTTAGCGGCACCTGGCGATTGAGTC GAACACCCTGATATTTCGTTATAAGATATATATGACTTTTCTGGTTTTTTCGTTTTCTTTACACT TTTTTCCATAGCACGCGTTCAAAGCCTAATTTTGTAGAAAGGGGACGTTTTCAAGAGTGATTGAA CTAGTTGAATATACTGTTTTGGTTTTGGTAAACGCCAAAATAGTTTGTTTTGAAAAGCTGATCTA ATTTTTTTTTGCCGTACTGTACCCTTAGTCAATCCATCTATCCTC Found at i:573085 original size:6 final size:6 Alignment explanation
Indices: 573074--573087 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 573064 TGAATATACT 573074 GTTTTG GTTTTG GT 1 GTTTTG GTTTTG GT 573088 AAACGCCAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.36, T:0.64 Consensus pattern (6 bp): GTTTTG Left flanking sequence: Indices 572574 -- 573073 TTATGTCAACCAGACCAGGCTGCGGTTGCATCTCCTTCATGGCTTTTGCCTCAACTAATTCTATT CTATCATGCGCTTCTTTTTTTTCTTTTTCTGTGGGCAATGTATCAATGAAATGAAGGATATCAAT CGATTTGTCCTCCAATCCTATGGCGTTTCTCATTGCTGGAAACATCCAAGGCTGGGGTAGGCATA ATGTGCCATCCATATCAAATACAACCGCTTTGATGTGTTTTAATCCCTGTAGTCCTTGTAGCTTT GTCATTATTCTGTGATACACTTTCAGTGACTATTGAACCGTATATATTGCCCGACTATCCTAATG ATTGTGTTAGCGGCACCTGGCGATTGAGTCGAACACCCTGATATTTCGTTATAAGATATATATGA CTTTTCTGGTTTTTTCGTTTTCTTTACACTTTTTTCCATAGCACGCGTTCAAAGCCTAATTTTGT AGAAAGGGGACGTTTTCAAGAGTGATTGAACTAGTTGAATATACT Right flanking sequence: Indices 573088 -- 573587 AAACGCCAAAATAGTTTGTTTTGAAAAGCTGATCTAATTTTTTTTTGCCGTACTGTACCCTTAGT CAATCCATCTATCCTCTGAACAATGACTTCGGCTGTACCTTATGATCCATATGATGATCTGGATA ACAATCCATTTGCTGAGCCCCAGGAGGAAGATTCTGAACCTGCTGCAACAACCACAGATGGATCA TCTTCTATGTCAGAGGAGCGTGTAGGTACTGAGCAAACTGCAGCTTCCGTTCAGGACAACGGAAC TGCAAATAACATTCAAAATGGTCTTGGTGAAGAAGGAAACGCAACACGATCAAAAACTTCAAACG AACACAATGAAAACCAACAACCATCTCAACCATCAGAACGTGTTATACTTCCTGAAAGAAGTGAT GAGAAAAAAAAATACACTCTACTTGCAAAAGTAACAGGATTGGAACGATTTGGATCTGCAACCGG TAAGAAAGAGAATCCGACTATTATATTTGATTGCTCCACAAATTT Found at i:579526 original size:3 final size:3 Alignment explanation
Indices: 579518--579541 Score: 48 Period size: 3 Copynumber: 8.0 Consensus size: 3 579508 TTTTACCATA 579518 CAT CAT CAT CAT CAT CAT CAT CAT 1 CAT CAT CAT CAT CAT CAT CAT CAT 579542 GCACTGTTTC Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 21 1.00 ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33 Consensus pattern (3 bp): CAT Left flanking sequence: Indices 579018 -- 579517 TAGCATTATACGACATTTTTAGAAATCCAATATTAGAAAACCCAAAAATAAATGAGCACAAAGAA CAAATCATTAAGGACTACGAAGATATTTATATGCTCTTACCACAACAAAATCGCCATTTAATACT TTATTTAGCCGCGCTCTTGAATTTATTTGCAAGAAATGAAAAGAAGAATTTAATGTCAGCAAGCA ATTTAGCGGCCATCGTACAACCCTCACTTTTGTCTCATCCCAAGGATGAAATGTGCCCGAAAGAG TATGAGGCTTCCAGAACTGTCATCGAATTCCTCATACTACACGCTTCAGATATAATACCGAATAC GGAAAAAGCGAATAAGGACACCATGCCGCATGCAGGAACAGTAGCAAAGTTTAACAACATTACCG TTCCTGAAATGGCTATTGACTCCGATGAAGAAGATTTTGTGCACCCTTCAATAGATGACCATATG CTTCCAAGGTCACGTGCACTTTCTGACTCCAACAATTTTACCATA Right flanking sequence: Indices 579542 -- 580041 GCACTGTTTCCTAGCCCAATAGATTTTGATAACAATGGGCTTTCTGTACCGAGATCCTTTAAAGG TAGAACATTGAGTGCAGAGTCCCTTTCTCCCAGACTTAGTAAATTACTTGGGAACGTTGGAAACA GCAGCAATACTGGCATCAAAGACCCTACAGAAAGAGTTCCTAGAGGTGAACATAAAACCAAACAC AAACAACGACAGTCATGGTTGAGAAGACTCACTAGCCCTTCTAGAACGCAGCCTTAGCTTCCTAA GCACTGTGATCTGCTAGTCGATTCCGAGGTTCGGCGAAGAAATTGTCGTTGCCCCGCCAGGGGCC TTTTGCGATACTCGGCGCTTCTTTCAGCAATCTCGGTCCGCATCTCGGCAAGGGGGGGCATGACA CGGGCCGCTCTGGTTGGTCAGTTCCTATTTTCTGTAACTTCCATTGTTTGGTTAAAGAATATATA AGTTATTGAAAAGCTCATAGGTCCCTTATTATAGGCCCTAAGGTT Found at i:588184 original size:6 final size:6 Alignment explanation
Indices: 588173--588185 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 588163 GCACCCGCGC 588173 CCACAT CCACAT C 1 CCACAT CCACAT C 588186 TGCATATGCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15 Consensus pattern (6 bp): CCACAT Left flanking sequence: Indices 587673 -- 588172 AAGAGTAAGACCCTCTTCGATTCAAGACCCGTCCACCAGTTCCAATTCCTTTGGTAATTTCGTTC CGCAAATTCCGGGCGCCAATAACTCTATCCCCGAGTACTTTAATAACTCTCATGTAACTTACGAA AACGCAAACCATGCCCCGCTGGAATCCAATAACCCGGAAATGCAAGAGCAAAACAGACCTCCGAA CTTTCAAGATGAAACACTGAAACATTTGAAAGAAATAAATTTTGATATGGTTAAGATTATAGAGT CTATGCAGCATTTCATATCTTTGCAACACAGTTTTTGTTCACAGAGTTTCACCTTCAAGAATGTG AGCAAGAAAAAATCGGAAAATATCGTGAAGGATCACCAAAAGCAACTTCAGGCATTCGAAAGCGA TATGTTAACTTTCAAACAGCACGTCATGTCGAGGGCCCACCGTACAATAGATTCTCTTTGTGCTG TAAATGCTGCCGCTACCGCTGCCTCTGTCGCCCCTGCACCCGCGC Right flanking sequence: Indices 588186 -- 588685 TGCATATGCACCCAAATCTCAGTATGAGATGATGGTTCCTCCAGGGAACCAGTATGTCCCGCAGA AATCTTCCTCGACCACGAACATCCCTTCGAGATTCAACACGGCTTCAGTGCCGCCCTCGCAACTT TTGTACAATACCAACCGCAGTCGCAACCAACATGTGACTTATGCGAGCGAACCGGCACATGTACC AAACTTTATCAATCAGCCGATACCCATCCAACAACTACCTCCACAATATGCAGACACTTTTAGCA CTCCACAAATGATGCACAATCCTTTTGCCTCGAAAAATAACAACAAACCGGGCAACACGAAGAGG ACCAATAGTGTTCTCATGGACCCGCTGACTCCCGCAGCGAGTGTTGGAGTTCAGGGTCCACTAAA CTATCCTATCATGAATATTAATCCTTCTGTCCGTGACTACAACAAGCCTGTCCCTCAAAATATGG CTCCGAGTCCAATATATCCTATTAATGAACCAACAACGAGATTGT Found at i:589389 original size:5 final size:5 Alignment explanation
Indices: 589379--589391 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 589369 ATTACTTTTG 589379 TTTCA TTTCA TTT 1 TTTCA TTTCA TTT 589392 TAGGTATCCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69 Consensus pattern (5 bp): TTTCA Left flanking sequence: Indices 588879 -- 589378 AGCCCCAATTCGGTACTCTCAGCAGGGATTGCTTCGCTCATTAAACAAAGCTGCTAATTGTGCTC CAGATTCGGTAACTCCATTAGACTCGTCTGTCTTGACGGGCCCTCCTCCAAAAAACATGGACAAT CTTCCTGCTGTTTCTTCAAATTTAATAAACTCCCCCATGAACGTCGAGCACAGCTCAAGCCTATC ACAAGCAGAACCTGCACCACAAATAGAACTACCGCAGCCATCTTTGCCCACAACGAGCACCACTA AGAATACTGGCGAGGCTGACAATAGTAAGAGAAAAGGGAGCGGTGTTTATTCTTTACTGAATCAA GAGGATAGCAGCACGTCCAGTGCTGATCCTAAAACTGAAGATAAGGCCGCTCCGGCACTCAAAAA GGTTAAGATGTGATCTTTGCCTTTTTAATCTCTAGTTGTCTAAAAGTTCAAAGCACCTCACTGTA TGTTTATTACCTTTGTTCCAATTACTTTTGTTTCAATTACTTTTG Right flanking sequence: Indices 589392 -- 589891 TAGGTATCCCAACGGGTAATCATTGTTATTTATTTTATTCACTTTTTTTTCTTTTCCTCCTGATC CTTGTGATTATAACTATATTTTTACCAACTCCGGTAGTTGTTTTATTAAGTTTTCATCACACTAA ATTGTATTTTCCACTTTCATTTCCACCTTCCTTTCCCCTACCTCCCTTCAATTCGTATCATAATA CCGCCCGTTCTTTCTAGTATATCACAGAATAGCTACGGGGTATTGTCTCATAAACAGAAAAATGC ACCTTTCGATAAACTTCCTGTACAATAATTCTATAAGTATATATGTATGTTTGCTATTAAACAAC CATCACAAAAAGACACCTTATTCTTTATGGACGCCTTCAAGTTGTGCTCCTATTCTGTAGTTGTT GCACCATGCATGTTACCATCATAGCCGTCTAAGCGGGACTATTTCCTTTTGTTAACACCTATACT AATTAAACAGCTGGGGAAATTTTTATTCTATGCTTCGTTGATGTC Found at i:596898 original size:6 final size:6 Alignment explanation
Indices: 596889--596901 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 596879 TACACGCAAA 596889 TATCCT TATCCT T 1 TATCCT TATCCT T 596902 TCATTCATCG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54 Consensus pattern (6 bp): TATCCT Left flanking sequence: Indices 596389 -- 596888 ATTGAACAATAAGCACGACCTTCATCTTAGGCCAGAAACTTACTGAATCTACAGTAAATCATACT AATCATTCTGATGATGAACTCCCTGGACACCTCCTTCTCGATTCAGGAGCATCACGAACCCTTAT AAGATCTGCTCATCACATACACTCAGCATCATCTAATCCTGACATAAACGTAGTTGATGCTCAAA AAAGAAATATACCAATTAACGCTATTGGTGACCTACAATTTCACTTCCAGGACAACACCAAAACA TCAATAAAGGTATTGCACACTCCTAACATAGCCTATGACTTACTCAGTTTGAATGAATTGGCTGC AGTAGATATCACAGCATGCTTTACCAAAAACGTCTTAGAACGGTCTGACGGCACTGTACTTGCAC CTATCGTAAAATATGGAGACTTTTACTGGGTATCTAAAAAGTACTTGCTTCCATCAAATATCTCC GTACCCACCATCAATAATGTCCATACAAGTGAAAGTACACGCAAA Right flanking sequence: Indices 596902 -- 597401 TCATTCATCGAATGCTTGCGCATGCCAATGCACAGACAATTCGATACTCACTTAAAAATAACACC ATCACGTATTTTAACGAATCAGATGTCGACTGGTCTAGTGCTATTGACTATCAATGTCCTGATTG TTTAATCGGCAAAAGCACCAAACACAGACATATCAAAGGTTCACGACTAAAATACCAAAATTCAT ACGAACCCTTTCAATACCTACATACTGACATATTTGGTCCAGTTCACAACCTACCAAAAAGTGCA CCATCCTATTTCATCTCATTTACTGATGAGACAACAAAATTCCGTTGGGTTTATCCATTACACGA CCGTCGCGAGGACTCTATCCTCGATGTTTTTACTACGATACTAGCTTTTATTAAAAACCAGTTTC AGGCCAGTGTCTTAGTTATACAAATGGACCGTGGTTCTGAGTATACTAACAGAACTCTCCATAAA TTCCTTGAAAAAAATGGTATAACTCCATGCTATACAACCACAGCG Found at i:598856 original size:6 final size:6 Alignment explanation
Indices: 598845--598859 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 598835 TAAAGATATT 598845 AAAGAA AAAGAA AAA 1 AAAGAA AAAGAA AAA 598860 TATATCGAGG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00 Consensus pattern (6 bp): AAAGAA Left flanking sequence: Indices 598345 -- 598844 CGCAGATAAGTGACCAAGAGACTGAGAAAAGGATTATACACCGTTCACCTTCAATCGATGCTTCT CCACCGGAAAATAATTCATCGCACAATATTGTTCCTATCAAAACGCCAACTACTGTTTCTGAACA GAATACCGAGGAATCTATCATCGCTGATCTCCCACTCCCTGATCTACCTCCAGAATCTCCTACCG AATTCCCTGACCCATTTAAAGAACTCCCACCGATAAATTCTCGTCAAACTAATTCCAGTTTGGGT GGTATTGGTGACTCTAATGCCTATACTACTATCAACAGTAAGAAAAGATCATTAGAAGATAATGA AACTGAAATTAAGGTATCACGAGACACATGGAATACTAAGAATATGCGTAGTTTAGAACCTCCGA GATCGAAGAAACGAATTCACCTGATTGCAGCTGTAAAAGCAGTAAAATCAATCAAACCAATACGA ACAACCTTACGATACGATGAGGCAATCACCTATAATAAAGATATT Right flanking sequence: Indices 598860 -- 599359 TATATCGAGGCATACCACAAAGAAGTCAATCAACTGTTGAAGATGAAAACTTGGGACACTGACAA ATATTATGACAGAAAAGAAATAGACCCTAAAAGAGTAATAAATTCAATGTTTATCTTCAACAGGA AACGTGACGGTACTCATAAAGCTAGATTTGTTGCAAGAGGTGATATTCAGCATCCTGACACTTAC GACTCAGGCATGCAATCCAATACCGTACATCACTATGCATTAATGACATCCCTGTCACTTGCATT AGACAATAACTACTATATTACACAATTAGACATATCTTCGGCATATTTGTATGCAGACATCAAAG AAGAATTATACATAAGACCTCCACCACATTTAGGAATGAATGATAAGTTGATACGTTTGAAGAAA TCACTTTATGGATTGAAACAAAGTGGAGCGAACTGGTACGAAACTATCAAATCATACCTGATAAA ACAGTGTGGTATGGAAGAAGTTCGTGGATGGTCATGCGTATTTAA Found at i:603874 original size:6 final size:6 Alignment explanation
Indices: 603863--603875 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 603853 CTTTAAATAA 603863 AACATC AACATC A 1 AACATC AACATC A 603876 TTAAATAAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15 Consensus pattern (6 bp): AACATC Left flanking sequence: Indices 603363 -- 603862 TTAACTTTTTCTGGGGTCATTGTGGTAGAATCTATTTCTTGTCTAACCATGGAACGATTGAGCGT TGCTTGACCAATAACATCATTTATGGAGAGTAGATCAGTTAATTGCGATATATCTTTAACGCTTG AACCAAGAGTTGATGTTAGGACCGGTAGTCTGTTCTTGGATGAAATCAAATCAGCCTCAGTATCA ACGCACCAAAACTGCAAGTGCATCAAGCACTTCCTAATATCCGCATTATTTTGTTTTACAACATC GCGAAGCCAGTCGTCACAAACTTCGATTTCAAGGGACTTTAAATATTTTGTTAGAAACGCATAGA CTGTGGATGTACTAATTTTCTTAGTATGAAACAAAGAGTTTTGTTCACTTGCCAAGGCAATAAGT TCACTAGGAACTAGTGACAAATCCTTACAAGTCAATACGAGGGGCCTTCGTGAAAATTCACAAAG CTTGCTGATCATTGCCCAATATCCCCTATCATGTTCTTTAAATAA Right flanking sequence: Indices 603876 -- 604375 TTAAATAAAACAAGCCCGTAGTCACTTTTCCTTTTTGAGGAATCTTTGACATAGTGTGTGGTGGT AAAATCTAGTAGGATATCAAGCAAATCTTTTTTGCTCCTGTTCATGTTTGAATTAACTTCATATA TCTGGTAAGAATTATCGTCGCCAGCAATCTCTCTCATGATTGTCTGTATCAGCGTTTTCTTGCCT ATTGAATTTCCGTGTAATATCATTAGTGGAACAAATTCGCTCAAGCTGCTATTTGCTTCGCCATT TCTGTAGAAATCTGGACGCAAGTTTTCGTCTTCTTCGAGATCAGGTACAATGAAGTTGGCAAGCT CATCACCAGATCCCTGTTGTTTATTGGGATTTATTCTGTTCAATAGACGGTTCCTCAAGGTAGGC TTTTCTAGCGTATGAAAGGATGTTTCAATCCAATTTTTGATTCGAAGTTTCAATTTGGGTTCAAT TAATACTTGTTTTAAAGTGACAGGCTTGAATAGCTGCGGCCATGT Found at i:604596 original size:6 final size:6 Alignment explanation
Indices: 604585--604598 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 604575 ATCGATTGAT 604585 GTAATG GTAATG GT 1 GTAATG GTAATG GT 604599 GGCTCTATTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36 Consensus pattern (6 bp): GTAATG Left flanking sequence: Indices 604085 -- 604584 TAATATCATTAGTGGAACAAATTCGCTCAAGCTGCTATTTGCTTCGCCATTTCTGTAGAAATCTG GACGCAAGTTTTCGTCTTCTTCGAGATCAGGTACAATGAAGTTGGCAAGCTCATCACCAGATCCC TGTTGTTTATTGGGATTTATTCTGTTCAATAGACGGTTCCTCAAGGTAGGCTTTTCTAGCGTATG AAAGGATGTTTCAATCCAATTTTTGATTCGAAGTTTCAATTTGGGTTCAATTAATACTTGTTTTA AAGTGACAGGCTTGAATAGCTGCGGCCATGTGAGAGTTGTATTTCTTTTAATATTTGTGCCAAGT AATACCGGTGCTTGATAGCGAACAGGAATACAAGATGCTGAATTCTTGTCTTTCAACGATTCATA GTCACTAGGAAGAAAATTATGATTTAATGGCGGTATTGTGCGGAAAGGAAGCGGGATATCAACAC TCCGATCTGACAGCTCTTTGTCACCTACTGGGAAAATCGATTGAT Right flanking sequence: Indices 604599 -- 605098 GGCTCTATTTCATTTAGTTTAGAGATGCTATTTAATCTTTTGAACGTGTCGGTTGTCTCATGTTT AAGGAAGTTTTTAATCTTTGATGCTCTTTCATTAAGAAGCGATGATTTGATTCTCGATGTGGAAA TTATAGAAATATCATCTTCATGCTCCTGCGAAAGTGCAATTTTGCTACAATTAGTCTCACTTTTG GGACTCTTATCACTGATTACAATAAGATCATCATCGTCGTCATCGCATTTTTCTTTTGTGCGTTT CGTCATCAAAAACTCCTTTGCAGATTTGTGATTAGTAGAAACAGCTTCAATTGGCTTCACAACAG AGTGGTTTAAAAATATTACTGAAGAATCGTCATGTTTGGCTGTTCTGGCGTCAAAAGTGCCTGAT TCAGTATCATTTTCGTCATCGATGGTAATCTGTAGAGCATCTTGTCTTCTCACTTTTCTCTTATT TCCTGTCAATATATCAGATAAAGACACGTGCCTTTTCATTGGAAA Found at i:605513 original size:6 final size:6 Alignment explanation
Indices: 605502--605514 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 605492 GCTAAGACAA 605502 TTCTTG TTCTTG T 1 TTCTTG TTCTTG T 605515 AGCGTTTTCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.15, G:0.15, T:0.69 Consensus pattern (6 bp): TTCTTG Left flanking sequence: Indices 605002 -- 605501 CGTCATCGATGGTAATCTGTAGAGCATCTTGTCTTCTCACTTTTCTCTTATTTCCTGTCAATATA TCAGATAAAGACACGTGCCTTTTCATTGGAAAACCTTCTCTGATTCAAAAAGTTTAATGCTATGG TACCATACGATTTAGTGCAGCGAAGGTGGTCAGTGAAGACGTTAAATACATGAAGCAAATAGCCG GATAATAATACTAAACTAATTTATCACCGCTAACGTTACGCGTTTGGCGTCCTAAAAAAAAGAAG GAAAAAAAAACCTATTTATTCACTCTATTTCGCCATAAAACGACATATAAATATTATACAGATGA TGAAAGCCCACAAATTATGTTTAGTAGCGTTCTTTTAATCTAGATGCAACGGTACGTAAGTTCCC ATAAACTTTACCTGGAGGGGAACCCAAAATTAAACTAACCACAGATTCTCTTGCCATTCTGATGT GGGTGAACCCGCCCAAAATGTGGATTTTAGAGTCAGCTAAGACAA Right flanking sequence: Indices 605515 -- 606014 AGCGTTTTCAATCGCAAATTTCGTTTTACCGTCTTTACCGGCAATACGACCGATGGCTCTCGACA AATGGTCACCTGTTAGAGTCTTGACATCTTTGACTTCAAAAGTCTCAATATATAAATCATCTAGC CTCAATAGTGCGATAGAATCGTCAAGATCAAACCCTAAGGTAAAGGCTTTGATAAAATCGGCCCC TTTTTGCAACGCACCAGGGTCTGTGGTAAATTTAGGATTCGTTCTTAGTTCTACGGATTTGGTCT TTAAATTCATTCTGACTTGCAGCTTCAAGTGCTCGACCAAAGGAGGATAAATTTTTGTCCAACTG TTCCTCAAGGGTGTCATTCTGTGTGGTGGAACCATGATCTTTCTCGATTCAAATTTTATTTTGTT ACCCTGTGTTTTGCTAGCTGAAGTGAAGCGAGGTTTCCCCTGGTCATCAACCACTACGGTCTTAG ATTCGTGCGTTTTCCGGCTACCTTCTTCGCCCTCTACCTCTTCTT Found at i:609918 original size:6 final size:6 Alignment explanation
Indices: 609907--609920 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 609897 AATCAAGATG 609907 ATCCAA ATCCAA AT 1 ATCCAA ATCCAA AT 609921 GGAACAAGTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21 Consensus pattern (6 bp): ATCCAA Left flanking sequence: Indices 609407 -- 609906 GTATGAAGTGACTGTGACAAATGAAGCTCTGTAATTCTTAGTTTGAATAACTTGCACATGTACTA TGGTCAGTATCATGTCAAGCTTGTAGTACGTGTGAACACAGATTTGGTTATGGAGTAATATAATA CTTAACAGCAAGAGAACATCAATGGAGCTTTACTTAGACTTCGGGAGGTTTTCATACAGTTGTGT ACTATACATAGATTAATAAGATTGCATATCAGAACTAACAATCCTATCTTGAGCTGAGTACCGAG TTTGTATCAGCCTACAATTAGAGATTTCAATGGGAAAAAATGAGTATGCAACAAATAGTTAACCA TTGCTCGATTAAAGCACTCTTCTTTTTTATAAGAATACCTAGGATAAGATCATTTAAACTTAAAT TCACAGCCATAATATATGCATAACTCCTCATATAGCTGGTCTTATAGTAGTTCGATGGAGTACAC TGTTAGCCCTGGCTTAAAAGTCGTGAAATCATTGAAATCAAGATG Right flanking sequence: Indices 609921 -- 610420 GGAACAAGTAATTTCTTTTGGGTATTAAGTTAATAGTGCCATCTCTCTTCAACTTTTTCAATTCT GATGTCATGGAATTGGGAGTTACTAAAGTTAGTGGAGTTATGGACCCGTTTAAACGCAGCCGCCT AATTGTTTCTGTTAAAAGTGGTAAATCACAGCCTTTAAGGTCTATTACATGATGGTTACCTACAC TGAATGCCACTTCATCTATCGACTCAATACCATCCTGTGTATTGATAAGAGAAGAAACGGTTAGG TTATTGCTCATATACATCCAGGTGGGTGGTGAGTATGTTTTCCACCATATGTGAACGCCCATTTG TTCGGTACGAAAGTGGAAGTAATCTCCCAAAAATTGGATAATTCCTGCTTGATGTGAAATTCCCA TGATGAACGCCATGATTATGTTAAAAAGAAGCCAAGTTCCCTTGAAAATTTTCTTGTTTACTAAC GTGGAACTCAGAGGTGTCCAGTTTAAGTTTGTCACGAGTAGTGGC Found at i:610729 original size:6 final size:6 Alignment explanation
Indices: 610718--610733 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 610708 TAGACACGAG 610718 GAAAAT GAAAAT GAAA 1 GAAAAT GAAAAT GAAA 610734 GTAAAAGTAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.69, C:0.00, G:0.19, T:0.12 Consensus pattern (6 bp): GAAAAT Left flanking sequence: Indices 610218 -- 610717 TTTTCCACCATATGTGAACGCCCATTTGTTCGGTACGAAAGTGGAAGTAATCTCCCAAAAATTGG ATAATTCCTGCTTGATGTGAAATTCCCATGATGAACGCCATGATTATGTTAAAAAGAAGCCAAGT TCCCTTGAAAATTTTCTTGTTTACTAACGTGGAACTCAGAGGTGTCCAGTTTAAGTTTGTCACGA GTAGTGGCACTAGCGGTACAAGGAATCTTAATTCTTGATGTTGAAAGAATGAAAGAAAAAGCAGG CCAGATATGATTGCGTAAGTAGATAATTTATCGAGTTTGTAACCGGAAAAAATCGCTAGCAGCAA TACTGGGCCAACTATTTGAGGTAAATTGACCAGCAGATGGGTGTATCTTGGATGTAATCCATGTA CTTGCAAATTTTGGACATTGAGGTTGTATTTCAGGTTATTCAAGGGCGTAATGACAAATCCCTTT CCGTTGTTATAAATATTTGTATCAATAAGAACAAATAGACACGAG Right flanking sequence: Indices 610734 -- 611233 GTAAAAGTAAAGAAAAGGATTTCCAATGGACCCGGTAAAACTTCCAGAATAATATCAAACATGGT AAGAAAATAAATGCAGGAAAAGTAACTCTATTAAAAACACCAAAACTAAATATAAGTCCCAATAT AACCGAATTTTTGAAATTACTTCTTTGAATATTTTTTTCGTTTACCATATCTTCCATTACAGTTA AAGTTGAGATTAAAGCCAGCGTTTCTATGGAATTGGAAAACGTGTGTGTTTGGTACGTCCAGGTT ACGTAAGAAGTTAAAAGTAGACTTTTTTGCATGAATTGTACAGCCTTTCTCTCATCCCTTATTAA TTTAGGTATTAAAAAATGATAGCACAATAGGTACATCACATAGTTTTGTAGTCTCATCGAATACA GAATTAACGCTGGGTTGTCCTGAATTTCGGGAAAAGATTCTAAAATAGTGAACAAAGGCCCGTAA ACCAATAATAGGGGGCCGTAACTCCTAGCAGCAAATTTTGATTTA Found at