Tandem Repeats Finder Program written by:
Gary Benson
Department of Biomathematical Sciences
Mount Sinai School of Medicine
Version 4.00

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: contig00000333
Parameters: 2 5 7 80 10 25 1000
Length:  5725

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74--322
3
84.3
3
72
9
98
23
42
30
1
1.64
122--137
4
4.0
4
83
0
25
0
81
18
0
0.70
94--299
46
4.6
45
91
3
338
21
45
30
1
1.63
258--273
4
4.0
4
83
0
25
0
81
18
0
0.70
581--833
38
6.7
38
96
0
422
16
24
26
32
1.96
700--719
10
2.0
10
100
0
40
30
30
10
30
1.90
776--795
10
2.0
10
100
0
40
30
30
10
30
1.90
816--843
10
2.8
10
100
0
56
28
28
10
32
1.90
832--1022
28
6.8
28
85
2
259
14
13
36
35
1.84
832--1008
86
2.1
84
83
2
245
14
14
36
33
1.87
1194--1330
20
6.8
20
97
2
256
10
29
33
24
1.88
1924--1939
7
2.3
7
88
0
25
68
0
31
0
0.90
2426--2446
9
2.3
9
91
0
35
57
4
0
38
1.20
2557--2695
3
45.7
3
81
2
134
33
23
31
11
1.90
2558--2693
30
4.4
30
80
7
164
33
22
32
11
1.90
2568--2683
33
3.6
32
81
6
158
32
21
32
12
1.91
2786--2829
7
6.1
7
94
5
79
13
0
40
43
1.44
2943--3019
7
11.3
7
80
4
98
41
37
2
18
1.64
3109--3165
7
8.1
7
84
0
86
40
43
3
12
1.59
3274--3292
5
4.0
5
86
13
31
21
0
0
78
0.74
3275--3292
9
2.0
9
100
0
36
22
0
0
77
0.76
3436--3458
9
2.7
9
93
6
39
65
0
8
26
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3509--3529
11
1.9
11
90
0
35
9
23
23
42
1.83
3793--3808
5
2.8
6
81
18
25
62
0
0
37
0.95
3796--3811
5
3.2
5
100
0
32
62
0
0
37
0.95
3815--3838
10
2.4
10
85
0
34
41
0
4
50
1.22
3940--3967
11
2.5
11
94
0
49
0
28
0
71
0.86
3991--4006
5
3.2
5
90
0
25
25
6
0
68
1.12
4107--4190
3
27.0
3
75
7
85
33
32
28
1
1.65
4395--4439
3
14.7
3
90
4
74
35
33
28
0
1.58
4382--4436
15
3.4
17
77
10
59
36
32
27
1
1.67
4502--4534
8
3.8
8
74
18
32
21
6
0
69
1.08
4554--4627
24
2.9
24
73
21
66
5
31
13
50
1.64
4594--4609
3
5.3
3
84
0
25
0
37
25
37
1.56
4597--5223
21
29.6
21
71
9
483
1
33
20
42
1.60
4618--4630
3
4.3
3
100
0
26
0
30
30
38
1.58
4660--4910
3
81.3
3
60
6
45
1
31
21
43
1.62
4723--4942
92
2.5
85
80
10
261
1
32
20
43
1.60
4966--4978
6
2.2
6
100
0
26
0
38
15
46
1.46
5029--5231
3
66.0
3
65
3
81
0
36
23
39
1.59
5295--5334
4
10.2
4
89
5
45
37
0
0
62
0.95
5295--5334
12
3.4
12
79
3
52
37
0
0
62
0.95
5671--5689
8
2.4
8
90
0
31
5
47
5
42
1.48
5706--5724
3
6.3
3
100
0
38
31
31
36
0
1.58

Tables:   1

The End!